IslandPath Analysis: Synechococcus sp. JA-3-3Ab



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.19   STD DEV: 4.44
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766
2760 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
748	 63.62	0	787481..789847	-	788	86605489	-	CYA_0782	-	putative membrane-bound protease
749	 48.48	-2	789979..790077	-	32	86605490	-	CYA_0783	-	hypothetical protein
750	 63.25	0	790054..792954	+	966	86605491	uvrA	CYA_0784	-	excinuclease ABC subunit A
751	 59.46	0	793050..794243	-	397	86605492	-	CYA_0785	-	coproporphyrinogen III oxidase
752	 60.59	0	795580..797388	+	602	86605493	dnaK-2	CYA_0787	-	molecular chaperone DnaK
753	 62.95	0	797505..798689	+	394	86605494	dnaJ	CYA_0788	-	chaperone protein DnaJ
754	 63.26	0	798686..798949	+	87	86605495	-	CYA_0789	-	hypothetical protein
755	 63.64	0	798946..800037	+	363	86605496	rsgA	CYA_0790	-	ribosome small subunit-dependent GTPase A
756	 61.54	0	800172..801692	+	506	86605497	-	CYA_0791	-	hypothetical protein
757	 60.83	0	801679..801798	+	39	86605498	-	CYA_0792	-	hypothetical protein
758	 64.45	0	802085..803077	+	330	86605499	-	CYA_0793	-	pentapeptide repeat-containing protein
759	 63.94	0	803159..804700	+	513	86605500	-	CYA_0794	-	sensor histidine kinase
760	 63.59	0	804796..805575	+	259	86605501	-	CYA_0795	-	sensor histidine kinase
761	 61.11	0	805640..806377	+	245	86605502	-	CYA_0796	-	DNA-binding response regulator
762	 63.51	0	806399..808078	-	559	86605503	-	CYA_0797	-	hypothetical protein
763	 61.48	0	808142..808642	-	166	86605504	rnhA	CYA_0798	-	ribonuclease H
764	 59.58	0	809059..810159	-	366	86605505	-	CYA_0799	-	DRTGG domain-containing protein
765	 61.45	0	810358..811815	-	485	86605506	-	CYA_0800	-	Trk family K(+) transporter
766	 61.82	0	811827..812486	-	219	86605507	-	CYA_0801	-	Trk family K(+) transporter
767	 58.28	0	812563..813909	-	448	86605508	clpX	CYA_0802	-	ATP-dependent protease ATP-binding subunit
768	 65.33	+1	814452..816473	-	673	86605509	ligA	CYA_0803	-	DNA ligase, NAD-dependent
769	 61.71	0	816711..817436	-	241	86605510	rnc	CYA_0804	-	ribonuclease III
770	 64.26	0	817528..817860	+	110	86605511	-	CYA_0805	-	hypothetical protein
771	 53.92	-1	817918..818223	-	101	86605512	-	CYA_0806	-	hypothetical protein
772	 55.50	-1	818226..819443	-	405	86605513	-	CYA_0807	-	ISSoc2, transposase
773	 52.36	-1	819298..819891	-	197	86605514	-	CYA_0808	-	ISSoc2, resolvase
774	 62.02	0	820043..821119	-	358	86605515	mutY	CYA_0809	-	A/G-specific adenine glycosylase
775	 59.76	0	821705..822037	-	110	86605516	-	CYA_0810	-	hypothetical protein
776	 63.57	0	822469..823629	+	386	86605517	-	CYA_0811	-	carboxylesterase
777	 63.83	0	823732..824013	+	93	86605518	-	CYA_0812	-	S4 domain-containing protein
778	 61.99	0	824515..825198	+	227	86605519	-	CYA_0813	-	putative membrane proteinprotein
779	 64.16	0	825281..825838	+	185	86605520	-	CYA_0814	-	hypothetical protein
780	 63.04	0	825882..827066	+	394	86605521	aspC	CYA_0815	-	aspartate aminotransferase
781	 55.81	0	827229..827486	+	85	86605522	-	CYA_0816	-	hypothetical protein
782	 65.61	+1	829654..830793	+	379	86605523	cefD	CYA_0818	-	isopenicillin N-epimerase
783	 65.71	+1	830790..830894	+	34	86605524	-	CYA_0819	-	hypothetical protein
784	 65.34	+1	830936..833575	+	879	86605525	-	CYA_0820	-	radical SAM domain-containing protein
785	 63.16	0	834601..836736	+	711	86605526	-	CYA_0821	-	ribonuclease
786	 67.42	+1	836795..837460	+	221	86605527	rnhB	CYA_0822	-	ribonuclease HII
787	 62.91	0	837615..838040	-	141	86605528	-	CYA_0824	-	hypothetical protein
788	 58.26	0	838116..838448	-	110	86605529	gvpJ	CYA_0825	-	gas vesicle protein J
789	 61.92	0	838488..839372	-	294	86605530	gvpN	CYA_0826	-	gas vesicle protein GvpN
790	 62.76	0	839461..840459	-	332	86605531	gvpC	CYA_0827	-	gas vesicle structural protein GvpC
791	 59.31	0	840868..841071	-	67	86605532	-	CYA_0828	-	hypothetical protein
792	 57.99	0	841132..841350	-	72	86605533	gvpA	CYA_0829	-	gas vesicle synthesis protein GvpA
793	 60.27	0	841733..841951	+	72	86605534	-	CYA_0830	-	hypothetical protein
794	 58.19	0	842103..842786	+	227	86605535	-	CYA_0831	-	V4R domain-containing protein
795	 57.14	0	842783..843034	+	83	86605536	-	CYA_0832	-	hypothetical protein
796	 58.75	0	843080..843559	+	159	86605537	-	CYA_0833	-	hypothetical protein
797	 60.14	0	843616..844305	+	229	86605538	-	CYA_0834	-	V4R domain-containing protein
798	 62.13	0	844397..844771	+	124	86605539	aroH	CYA_0836	-	chorismate mutase
799	 61.19	0	844768..845169	-	133	86605540	-	CYA_0835	-	hypothetical protein
800	 60.41	0	845336..846118	+	260	86605541	-	CYA_0837	-	hypothetical protein
801	 59.52	0	846251..849187	-	978	86605542	ppc	CYA_0838	-	phosphoenolpyruvate carboxylase
802	 56.59	0	849310..849567	-	85	86605543	-	CYA_0839	-	hypothetical protein
803	 59.12	0	850888..851364	+	158	86605544	-	CYA_0841	-	hypothetical protein
804	 56.86	0	851354..851761	-	135	86605545	-	CYA_0840	-	sensor histidine kinase
805	 57.33	0	851871..852020	+	49	86605546	-	CYA_0842	-	hypothetical protein
806	 61.31	0	852141..852719	+	192	86605547	-	CYA_0843	-	hypothetical protein
807	 63.75	0	852908..853696	+	262	86605548	map-1	CYA_0844	-	methionine aminopeptidase
808	 65.26	+1	853703..855547	+	614	86605549	-	CYA_0845	-	chloride channel (ClC) family protein
809	 63.08	0	855551..856219	-	222	86605550	-	CYA_0846	-	base excision DNA repair protein
810	 66.57	+1	856359..857447	-	362	86605551	murG	CYA_0847	-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
811	 60.62	0	857455..858429	-	324	86605552	-	CYA_0848	-	Ycf48-like protein
812	 56.86	0	858459..858764	-	101	86605553	-	CYA_0849	-	rubredoxin
813	 56.93	0	859234..859644	+	136	86605554	-	CYA_0850	-	FHA domain-containing protein
814	 60.14	0	860073..860210	+	45	86605555	-	CYA_0851	-	hypothetical protein
815	 62.09	0	860606..861961	+	451	86605556	accC	CYA_0852	-	acetyl-CoA carboxylase biotin carboxylase subunit
816	 64.09	0	862122..863051	+	309	86605557	-	CYA_0853	-	phage integrase family site specific recombinase
817	 47.92	-2	863105..863200	-	31	86605558	-	CYA_0854	-	hypothetical protein
818	 44.18	-2	863215..864228	-	337	86605559	-	CYA_0855	-	hypothetical protein
819	 49.59	-2	864219..864821	-	200	86605560	-	CYA_0856	-	DnaJ domain-containing protein
820	 63.51	0	865147..865431	-	94	86605561	-	CYA_0857	-	hypothetical protein
821	 64.28	0	865478..866230	-	250	86605562	-	CYA_0858	-	hypothetical protein
822	 66.23	+1	866403..867308	+	301	86605563	speB	CYA_0859	-	agmatinase
823	 58.37	0	867735..868409	+	224	86605564	-	CYA_0860	-	hypothetical protein
824	 62.28	0	868983..869552	+	189	86605565	-	CYA_0861	-	hypothetical protein
825	 64.93	+1	869558..870361	+	267	86605566	proC	CYA_0863	-	pyrroline-5-carboxylate reductase
826	 64.94	+1	870347..871561	-	404	86605567	-	CYA_0862	-	pyridine nucleotide-disulfide oxidoreductase
827	 61.39	0	871611..872861	-	416	86605568	-	CYA_0864	-	major facilitator transporter
828	 62.63	0	872893..872991	-	32	86605569	-	CYA_0865	-	hypothetical protein
829	 54.63	-1	872992..873099	-	35	86605570	-	CYA_0866	-	hypothetical protein
830	 57.14	0	873307..873600	-	97	86605571	-	CYA_0867	-	hypothetical protein
831	 58.85	0	873814..874056	+	80	86605572	-	CYA_0868	-	hypothetical protein
832	 63.21	0	874178..875191	+	337	86605573	hemF	CYA_0869	-	coproporphyrinogen III oxidase
833	 60.34	0	875223..875918	+	231	86605574	-	CYA_0870	-	phospholipase/carboxylesterase family protein
834	 63.15	0	875992..877470	+	492	86605575	-	CYA_0872	-	hypothetical protein
835	 59.09	0	877467..878363	-	298	86605576	-	CYA_0871	-	CRISPR-associated protein APE2256 family
836	 58.30	0	878417..879133	-	238	86605577	-	CYA_0873	-	hypothetical protein
837	 61.35	0	879144..880196	-	350	86605578	-	CYA_0874	-	putative CRISPR-associated RAMP family protein
838	 58.82	0	880193..880651	-	152	86605579	-	CYA_0875	-	hypothetical protein
839	 61.33	0	880648..881622	-	324	86605580	-	CYA_0876	-	CRISPR-associated RAMP family protein
840	 63.58	0	881677..882519	-	280	86605581	-	CYA_0877	-	CRISPR-associated Csm3 family protein
841	 50.72	-2	882527..882664	-	45	86605582	-	CYA_0878	-	hypothetical protein
842	 52.13	-1	882668..883114	-	148	86605583	-	CYA_0879	-	hypothetical protein
843	 65.44	+1	883111..884334	-	407	86605584	csx10	CYA_0880	-	CRISPR-associated RAMP Csx10 family protein
844	 67.23	+1	884334..885047	-	237	86605585	-	CYA_0881	-	CRISPR-associated RAMP family protein
845	 64.25	0	885047..887242	-	731	86605586	crm2-1	CYA_0882	-	CRISPR-associated RAMP Crm2 family protein
846	 63.37	0	887772..888923	+	383	86605587	cas6	CYA_0883	-	CRISPR-associated Cas family protein
847	 59.14	0	892609..892887	-	92	86605589	cas2-3	CYA_0885	-	CRISPR-associated Cas2 family protein
60.19	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.