IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-3-3Ab



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.19 STD DEV: 4.44
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766
2760 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
658	 59.08	0	696542..697939	+	465	86605401	-	CYA_0689	-	beta alanine--pyruvate transaminase
659	 56.22	0	698056..699204	-	382	86605402	-	CYA_0690	-	ISSoc1, transposase
660	 58.00	0	699490..699639	-	49	86605403	-	CYA_0691	-	hypothetical protein
661	 60.88	0	699774..701018	+	414	86605404	-	CYA_0693	-	GTP-binding domain-containing protein
662	 61.40	0	701015..701869	-	284	86605405	lipA-1	CYA_0692	-	lipoyl synthase
663	 56.97	0	702091..702585	-	164	86605406	-	CYA_0694	-	hypothetical protein
664	 56.96	0	703051..703287	-	78	86605407	-	CYA_0695	-	hypothetical protein
665	 49.83	-2	703721..704017	+	98	86605408	-	CYA_0696	-	hypothetical protein
666	 56.24	0	703998..704966	+	322	86605409	-	CYA_0697	-	MazG family protein
667	 59.09	0	705228..705359	+	43	86605410	-	CYA_0698	-	hypothetical protein
668	 57.59	0	705467..706513	+	348	86605411	-	CYA_0699	-	2OG-Fe(II) oxygenase family oxidoreductase
669	 62.53	0	706635..707576	+	313	86605412	-	CYA_0700	-	putative protease
670	 57.99	0	707669..708175	+	168	86605413	-	CYA_0701	-	hypothetical protein
671	 63.22	0	708185..710911	-	908	86605414	-	CYA_0702	-	polyA polymerase family protein
672	 57.92	0	711147..711695	-	182	86605415	frr	CYA_0703	-	ribosome recycling factor
673	 56.85	0	711934..712473	+	179	86605416	-	CYA_0705	-	hypothetical protein
674	 55.36	-1	712445..713638	-	397	86605417	-	CYA_0704	-	ISSoc1, transposase
675	 59.91	0	713715..714350	-	211	86605418	-	CYA_0706	-	hypothetical protein
676	 58.33	0	714927..715322	+	131	86605419	-	CYA_0708	-	hypothetical protein
677	 66.04	+1	715289..715768	-	159	86605420	-	CYA_0707	-	hypothetical protein
678	 64.64	+1	715879..717159	+	426	86605421	ahcY	CYA_0709	-	S-adenosyl-L-homocysteine hydrolase
679	 65.84	+1	717300..718511	-	403	86605422	argG	CYA_0710	-	argininosuccinate synthase
680	 53.22	-1	718783..718953	-	56	86605423	-	CYA_0711	-	hypothetical protein
681	 57.43	0	719078..719575	+	165	86605424	-	CYA_0712	-	hypothetical protein
682	 65.29	+1	719654..720526	+	290	86605425	lipA-2	CYA_0714	-	lipoyl synthase
683	 64.03	0	720523..721737	-	404	86605426	-	CYA_0713	-	GTP-binding domain-containing protein
684	 56.86	0	721730..721882	+	50	86605427	-	CYA_0715	-	hypothetical protein
685	 60.67	0	721907..722056	+	49	86605428	-	CYA_0716	-	hypothetical protein
686	 48.48	-2	722156..722287	+	43	86605429	-	CYA_0717	-	hypothetical protein
687	 58.73	0	722265..722768	+	167	86605430	aroQ	CYA_0718	-	3-dehydroquinate dehydratase
688	 59.22	0	723012..723548	-	178	86605431	-	CYA_0719	-	thioredoxin
689	 64.18	0	723925..727215	+	1096	86605432	-	CYA_0721	-	SbcC family exonuclease
690	 61.57	0	727212..727643	-	143	86605433	-	CYA_0720	-	hypothetical protein
691	 60.67	0	727936..728202	-	88	86605434	-	CYA_0722	-	hypothetical protein
692	 57.32	0	728199..728519	-	106	86605435	-	CYA_0723	-	hypothetical protein
693	 67.20	+1	728569..730068	-	499	86605436	-	CYA_0724	-	CobN/magnesium chelatase domain-containing protein
694	 58.86	0	730086..731264	-	392	86605437	tal	CYA_0725	-	transaldolase/EF-hand domain-containing protein
695	 55.50	-1	731379..732659	-	426	86605438	-	CYA_0726	-	ISSoc2, transposase
696	 52.19	-1	732514..733107	-	197	86605439	-	CYA_0727	-	ISSoc2, resolvase
697	 55.31	-1	733729..734001	-	90	86605440	cas2-2	CYA_0728	-	CRISPR-associated Cas2 family protein
698	 50.21	-2	734001..734948	-	315	86605441	cas1-1	CYA_0729	-	CRISPR-associated Cas1 family protein
699	 50.39	-2	734975..735607	-	210	86605442	cse3	CYA_0730	-	CRISPR-associated Cse3 family protein
700	 54.17	-1	735589..736212	-	207	86605443	cas5e	CYA_0731	-	CRISPR-associated Cas5 family Ecoli subtype protein
701	 48.73	-2	736216..737358	-	380	86605444	cse4	CYA_0732	-	CRISPR-associated Cse4 family protein
702	 44.33	-2	737425..738024	-	199	86605445	cse2	CYA_0733	-	CRISPR-associated Cse2 family protein
703	 47.43	-2	738036..739610	-	524	86605446	cse1	CYA_0734	-	CRISPR-associated Cse1 family protein
704	 56.11	0	739627..742308	-	893	86605447	cas3	CYA_0735	-	CRISPR-associated helicase Cas3
705	 57.65	0	742311..743219	-	302	86605448	-	CYA_0736	-	hypothetical protein
706	 55.23	-1	743274..743990	+	238	90296793	-	CYA_0737	-	ISSoc8, transposase, interruption-N
707	 55.10	-1	744741..745103	+	120	90296794	-	CYA_0739	-	ISSoc8, transposase, interruption-C
708	 56.90	0	745048..745221	-	57	86605449	-	CYA_0738	-	hypothetical protein
709	 65.06	+1	745386..746318	-	310	86605450	-	CYA_0740	-	RluA family pseudouridine synthase
710	 63.41	0	746652..749111	+	819	86605451	ppsA	CYA_0741	-	phosphoenolpyruvate synthase
711	 63.25	0	749181..750440	+	419	86605452	-	CYA_0742	-	branched-chain alpha-keto acid dehydrogenase subunit E2
712	 58.62	0	750971..752635	+	554	86605453	-	CYA_0743	-	putative lipoprotein
713	 54.03	-1	752909..753541	-	210	86605454	-	CYA_0744	-	NADH dehydrogenase subunit I
714	 58.38	0	753577..754698	-	373	86605455	-	CYA_0745	-	NADH dehydrogenase subunit H
715	 61.76	0	754760..754963	-	67	86605456	-	CYA_0746	-	hypothetical protein
716	 60.17	0	754994..756178	-	394	86605457	-	CYA_0747	-	NAD(P)H-quinone oxidoreductase subunit H
717	 63.84	0	756346..756663	+	105	86605458	-	CYA_0748	-	hypothetical protein
718	 59.86	0	756755..757312	-	185	86605459	-	CYA_0749	-	carboxymuconolactone decarboxylase family protein
719	 60.32	0	757386..757637	-	83	86605460	-	CYA_0750	-	hypothetical protein
720	 65.30	+1	758348..759151	+	267	86605461	ureD	CYA_0753	-	urease accessory protein UreD
721	 62.31	0	759189..760703	+	504	86605462	-	CYA_0754	-	hypothetical protein
722	 61.86	0	760890..762491	-	533	86605463	-	CYA_0756	-	dolichyl-phosphate-mannose-protein mannosyltransferase
723	 58.88	0	762688..763470	-	260	86605464	-	CYA_0757	-	hypothetical protein
724	 56.21	0	763464..764027	-	187	86605465	-	CYA_0758	-	hypothetical protein
725	 61.19	0	764247..765707	-	486	86605466	ftsY	CYA_0759	-	signal recognition particle-docking protein FtsY
726	 59.84	0	765802..766650	-	282	86605467	purU	CYA_0760	-	formyltetrahydrofolate deformylase
727	 59.00	0	766952..767290	-	112	86605468	tatA-1	CYA_0761	-	twin-arginine translocation protein TatA
728	 61.47	0	767499..770363	+	954	86605469	secA	CYA_0762	-	preprotein translocase subunit SecA
729	 61.79	0	770446..771204	-	252	86605470	-	CYA_0763	-	pspA/IM30 family protein
730	 62.87	0	771239..771949	-	236	86605471	-	CYA_0764	-	putative polysaccharide deacetylase
731	 62.84	0	771959..774466	-	835	86605472	-	CYA_0765	-	U32 family peptidase
732	 58.73	0	774623..774748	-	41	86605473	-	CYA_0766	-	hypothetical protein
733	 55.36	-1	774780..775973	-	397	86605474	-	CYA_0767	-	ISSoc1, transposase
734	 60.40	0	776204..776698	-	164	86605475	sixA	CYA_0768	-	phosphohistidine phosphatase SixA
735	 54.09	-1	776958..777299	+	113	86605476	trx-1	CYA_0769	-	thioredoxin
736	 55.18	-1	777430..778500	+	356	86605477	-	CYA_0770	-	hypothetical protein
737	 62.85	0	778523..779203	+	226	86605478	trpF	CYA_0771	-	N-(5'-phosphoribosyl)anthranilate isomerase
738	 61.01	0	779226..780056	-	276	86605479	-	CYA_0772	-	hypothetical protein
739	 61.66	0	780166..780984	-	272	86605480	-	CYA_0773	-	RNA pseudouridine synthase family protein
740	 55.88	0	781029..781538	-	169	86605481	-	CYA_0774	-	hypothetical protein
741	 56.11	0	781527..781706	+	59	86605482	-	CYA_0775	-	hypothetical protein
742	 61.33	0	781898..782347	-	149	86605483	rbfA	CYA_0776	-	ribosome-binding factor A
743	 55.45	-1	782541..783770	-	409	86605484	-	CYA_0777	-	ISSoc5, transposase
744	 59.46	0	783953..784174	+	73	86605485	-	CYA_0778	-	hypothetical protein
745	 56.86	0	784113..784265	+	50	86605486	-	CYA_0779	-	hypothetical protein
746	 65.00	+1	784262..785701	+	479	86605487	phrB-2	CYA_0780	-	deoxyribodipyrimidine photolyase
747	 58.89	0	785884..787233	-	449	86605488	-	CYA_0781	-	alkaline phosphatase
748	 63.62	0	787481..789847	-	788	86605489	-	CYA_0782	-	putative membrane-bound protease
749	 48.48	-2	789979..790077	-	32	86605490	-	CYA_0783	-	hypothetical protein
750	 63.25	0	790054..792954	+	966	86605491	uvrA	CYA_0784	-	excinuclease ABC subunit A
751	 59.46	0	793050..794243	-	397	86605492	-	CYA_0785	-	coproporphyrinogen III oxidase
752	 60.59	0	795580..797388	+	602	86605493	dnaK-2	CYA_0787	-	molecular chaperone DnaK
753	 62.95	0	797505..798689	+	394	86605494	dnaJ	CYA_0788	-	chaperone protein DnaJ
754	 63.26	0	798686..798949	+	87	86605495	-	CYA_0789	-	hypothetical protein
755	 63.64	0	798946..800037	+	363	86605496	rsgA	CYA_0790	-	ribosome small subunit-dependent GTPase A
756	 61.54	0	800172..801692	+	506	86605497	-	CYA_0791	-	hypothetical protein
757	 60.83	0	801679..801798	+	39	86605498	-	CYA_0792	-	hypothetical protein
60.19	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.