IslandPath Analysis: Synechococcus sp. JA-3-3Ab



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.19   STD DEV: 4.44
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766
2760 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
487	 56.30	0	524217..524708	-	163	86605223	-	CYA_0506	-	putative phycobilisome linker polypeptide, phycocyanin-associated, rod
488	 62.36	0	524898..525431	+	177	86605224	-	CYA_0507	-	hypothetical protein
489	 65.44	+1	527198..529402	+	734	86605227	-	CYA_0510	-	CobN/magnesium chelatase domain-containing protein
490	 60.00	0	529494..529808	-	104	86605228	-	CYA_0511	-	putative RNA-binding protein
491	 63.38	0	530063..532801	-	912	86605229	valS	CYA_0512	-	valyl-tRNA synthetase
492	 53.43	-1	532955..533377	+	140	86605230	-	CYA_0513	-	MerR family transcriptional regulator
493	 49.69	-2	533412..533570	+	52	86605231	-	CYA_0514	-	putative lipoprotein
494	 52.42	-1	533422..533835	+	137	86605232	-	CYA_0515	-	hypothetical protein
495	 58.39	0	533975..534796	-	273	86605233	cdsA	CYA_0516	-	phosphatidate cytidylyltransferase
496	 61.40	0	534777..534947	-	56	86605234	-	CYA_0517	-	hypothetical protein
497	 54.17	-1	534953..535072	+	39	86605235	-	CYA_0518	-	hypothetical protein
498	 60.48	0	535116..536117	+	333	86605236	-	CYA_0519	-	dehydrogenase E1 component, alpha subunit
499	 60.28	0	536338..537918	+	526	86605237	-	CYA_0520	-	NAD(P)H-quinone oxidoreductase subunit 4
500	 53.33	-1	538113..538292	-	59	86605238	-	CYA_0521	-	hypothetical protein
501	 64.35	0	538610..539299	-	229	86605239	-	CYA_0522	-	V4R domain-containing protein
502	 57.29	0	539316..539795	-	159	86605240	-	CYA_0523	-	putative phycobilisome protein
503	 58.48	0	539818..540696	-	292	86605241	-	CYA_0524	-	putative phycobilisome protein
504	 58.48	0	540751..541434	-	227	86605242	bchJ	CYA_0525	-	putative bacteriochlorophyll 4-vinyl reductase
505	 61.11	0	541607..542092	-	161	86605243	-	CYA_0526	-	iron-sulfur cluster-binding protein
506	 62.59	0	542537..543100	+	187	86605244	-	CYA_0528	-	putative phycobilisome linker polypeptide
507	 64.38	0	543064..544068	-	334	86605245	-	CYA_0527	-	taurine ABC transporter periplasmic substrate-binding protein
508	 67.40	+1	544262..545764	+	500	86605246	cobA/hemD	CYA_0529	-	uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase
509	 63.88	0	545801..546625	+	274	86605247	menB	CYA_0530	-	naphthoate synthase
510	 56.40	0	546670..549456	+	928	86605248	polA	CYA_0531	-	DNA polymerase I
511	 61.30	0	549522..549782	+	86	86605249	grxC	CYA_0532	-	glutaredoxin 3
512	 60.61	0	549834..550130	-	98	86605250	-	CYA_0533	-	hypothetical protein
513	 61.55	0	550279..550806	-	175	86605251	-	CYA_0534	-	UbiE/COQ5 family methlytransferase
514	 64.07	0	550816..551700	-	294	86605252	-	CYA_0535	-	arginase family protein
515	 58.59	0	551962..552357	+	131	86605253	psaD	CYA_0536	-	photosystem I reaction center subunit II
516	 60.26	0	552727..553335	-	202	86605254	-	CYA_0537	-	anti-oxidant AhpCTSA family protein
517	 56.19	0	553397..553501	+	34	86605255	-	CYA_0538	-	hypothetical protein
518	 64.14	0	553498..553734	+	78	86605256	-	CYA_0539	-	hypothetical protein
519	 56.98	0	553736..553993	-	85	86605257	-	CYA_0540	-	hypothetical protein
520	 47.92	-2	553993..554184	+	63	86605258	-	CYA_0541	-	hypothetical protein
521	 63.51	0	554249..555292	+	347	86605259	glpX	CYA_0542	-	fructose 1,6-bisphosphatase II
522	 61.50	0	555611..556906	+	431	86605260	hemA	CYA_0543	-	glutamyl-tRNA reductase
523	 56.48	0	557019..557126	+	35	86605261	-	CYA_0544	-	hypothetical protein
524	 62.05	0	557310..559127	+	605	86605262	typA	CYA_0545	-	GTP-binding protein TypA
525	 65.05	+1	559138..561246	-	702	86605263	-	CYA_0546	-	hypothetical protein
526	 66.06	+1	561284..562600	-	438	86605264	cinA	CYA_0547	-	competence/damage-inducible protein CinA
527	 62.02	0	562722..563216	-	164	86605265	-	CYA_0548	-	acetyltransferase
528	 51.99	-1	563304..563780	-	158	86605266	-	CYA_0549	-	ISSoc3, orfA transposase
529	 65.26	+1	565110..565394	-	94	86605267	-	CYA_0551	-	hypothetical protein
530	 64.82	+1	565575..566657	+	360	86605268	-	CYA_0553	-	CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
531	 60.43	0	566654..567022	-	122	86605269	-	CYA_0552	-	putative lipoprotein
532	 62.70	0	567087..569000	-	637	86605270	-	CYA_0554	-	OMP85 family membrane protein
533	 62.93	0	569380..569727	-	115	86605271	-	CYA_0555	-	hypothetical protein
534	 61.76	0	570008..570109	+	33	86605272	-	CYA_0557	-	hypothetical protein
535	 60.45	0	570096..570899	-	267	86605273	cysE	CYA_0556	-	serine O-acetyltransferase
536	 55.26	-1	571083..571424	+	113	86605274	-	CYA_0558	-	glutaredoxin-like protein
537	 60.28	0	571433..571714	+	93	86605275	bolA	CYA_0559	-	BolA protein
538	 53.28	-1	572078..572428	+	116	86605276	-	CYA_0560	-	hypothetical protein
539	 62.72	0	572482..575142	-	886	86605277	topA	CYA_0561	-	DNA topoisomerase I
540	 59.05	0	575343..575762	+	139	86605278	-	CYA_0562	-	glyoxalase family protein
541	 63.92	0	575990..578068	-	692	86605279	dnaX	CYA_0563	-	DNA polymerase III, subunits gamma and tau
542	 62.01	0	578157..578693	-	178	86605280	-	CYA_0564	-	hypothetical protein
543	 65.95	+1	578722..579414	-	230	86605281	coaE	CYA_0565	-	dephospho-CoA kinase
544	 63.25	0	579514..581181	-	555	86605282	-	CYA_0566	-	alpha-isopropylmalate/homocitrate synthase family transferase
545	 59.95	0	581171..581542	-	123	86605283	-	CYA_0567	-	hypothetical protein
546	 64.61	0	581831..582655	+	274	86605284	-	CYA_0568	-	PP-loop family protein
547	 63.00	0	582703..584529	+	608	86605285	-	CYA_0569	-	hypothetical protein
548	 56.38	0	584810..585091	+	93	86605286	-	CYA_0570	-	hypothetical protein
549	 67.73	+1	585116..585490	-	124	86605287	-	CYA_0571	-	putative lipoprotein
550	 57.86	0	585522..586202	-	226	86605288	-	CYA_0572	-	hypothetical protein
551	 60.96	0	586289..586831	-	180	86605289	-	CYA_0573	-	hypothetical protein
552	 57.95	0	587313..587771	+	152	86605290	-	CYA_0574	-	S-adenosylmethionine decarboxylase proenzyme
553	 62.83	0	587800..588738	+	312	86605291	speE	CYA_0575	-	spermidine synthase
554	 58.94	0	588838..589989	+	383	86605292	-	CYA_0577	-	putative UDP-sulfoquinovose synthase
555	 63.71	0	589986..590897	-	303	86605293	-	CYA_0576	-	histone deacetylase family protein
556	 52.96	-1	590947..591267	-	106	86605294	-	CYA_0578	-	hypothetical protein
557	 52.05	-1	591438..591608	-	56	86605295	-	CYA_0579	-	hypothetical protein
558	 52.21	-1	591848..592186	-	112	86605296	-	CYA_0580	-	iojap protein
559	 57.94	0	592232..592873	-	213	86605297	-	CYA_0581	-	HD domain-containing protein
560	 58.22	0	592866..594677	-	603	86605298	lepA	CYA_0582	-	GTP-binding protein LepA
561	 50.48	-2	594944..595468	-	174	86605299	-	CYA_0583	-	hypothetical protein
562	 59.68	0	595616..596602	-	328	86605300	glyQ	CYA_0584	-	glycyl-tRNA synthetase subunit alpha
563	 58.24	0	596648..597418	-	256	86605301	-	CYA_0585	-	T1 family peptidase
564	 63.76	0	597478..598887	-	469	86605302	-	CYA_0586	-	GTP-binding domain-containing protein
565	 60.35	0	599119..599403	+	94	86605303	-	CYA_0587	-	hypothetical protein
566	 63.76	0	599457..600041	+	194	86605304	-	CYA_0588	-	WD-40-like beta propeller repeat-containing protein
567	 63.29	0	600076..601260	+	394	86605305	-	CYA_0589	-	succinyldiaminopimelate transaminase
568	 58.20	0	601421..602164	+	247	86605306	-	CYA_0590	-	hypothetical protein
569	 65.60	+1	602408..603721	+	437	86605307	hisD	CYA_0591	-	histidinol dehydrogenase
570	 63.29	0	603885..604595	+	236	86605308	-	CYA_0592	-	hypothetical protein
571	 61.76	0	604692..604997	+	101	86605309	-	CYA_0593	-	hypothetical protein
572	 65.74	+1	605022..606212	+	396	86605310	-	CYA_0594	-	TPR repeat-containing protein
573	 53.24	-1	606572..607189	+	205	86605311	-	CYA_0595	-	ISSoc2, resolvase
574	 55.25	-1	607044..608261	+	405	86605312	-	CYA_0596	-	ISSoc2, transposase
575	 56.00	0	608382..609281	+	299	86605313	-	CYA_0597	-	RNA polymerase sigma factor SigF
576	 54.09	-1	609477..610247	-	256	86605314	-	CYA_0598	-	hypothetical protein
577	 59.18	0	610837..611103	+	88	86605316	-	CYA_0600	-	hypothetical protein
578	 59.94	0	611850..613559	+	569	86605319	ureC	CYA_0603	-	urease subunit alpha
579	 56.89	0	613567..614016	+	149	86605320	ureE	CYA_0604	-	urease accessory protein UreE
580	 58.56	0	614023..614676	+	217	86605321	ureF	CYA_0605	-	urease accessory protein UreF
581	 59.11	0	614688..615296	+	202	86605322	ureG	CYA_0606	-	urease accessory protein UreG
582	 55.93	0	615313..616104	+	263	86605323	-	CYA_0607	-	putative urease accessory protein UreD
583	 59.56	0	617290..617655	+	121	86605324	-	CYA_0609	-	hypothetical protein
584	 62.87	0	618095..619252	+	385	86605325	-	CYA_0610	-	SCP family protein
585	 62.27	0	619713..621260	+	515	86605327	nirA	CYA_0612	-	ferredoxin-nitrite reductase
586	 59.94	0	621322..622644	+	440	86605328	nrtA	CYA_0613	-	nitrate ABC transporter, nitrate-binding protein NrtA
60.19	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.