IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-3-3Ab



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.19 STD DEV: 4.44
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766
2760 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
432	 53.49	-1	469078..469722	+	214	86605168	-	CYA_0449	-	hypothetical protein
433	 61.72	0	469759..470304	-	181	86605169	-	CYA_0450	-	hypothetical protein
434	 56.20	0	470548..470958	-	136	86605170	-	CYA_0452	-	hypothetical protein
435	 59.57	0	470890..471030	+	46	86605171	-	CYA_0453	-	hypothetical protein
436	 64.53	0	471065..471580	-	171	86605172	-	CYA_0454	-	hypothetical protein
437	 50.72	-2	471577..471714	-	45	86605173	-	CYA_0455	-	hypothetical protein
438	 60.97	0	471902..472375	+	157	86605174	-	CYA_0456	-	hypothetical protein
439	 62.35	0	472535..473902	+	455	86605175	nusA	CYA_0457	-	transcription elongation factor NusA
440	 64.51	0	473958..474605	+	215	86605176	-	CYA_0458	-	aromatic acid decarboxylase
441	 61.25	0	474747..475817	-	356	86605177	-	CYA_0459	-	alpha/beta fold family hydrolase
442	 51.67	-1	476202..476321	+	39	86605178	-	CYA_0460	-	hypothetical protein
443	 66.83	+1	476311..476940	+	209	86605179	cobH-1	CYA_0461	-	precorrin-8X methylmutase
444	 62.84	0	476947..477861	+	304	86605180	-	CYA_0462	-	hypothetical protein
445	 64.68	+1	477862..479121	+	419	86605181	cbiE/cbiT	CYA_0463	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE/T subunits
446	 58.79	0	479156..479752	-	198	86605182	-	CYA_0464	-	hypothetical protein
447	 62.64	0	479943..480662	+	239	86605183	sfsA	CYA_0465	-	sugar fermentation stimulation protein
448	 61.07	0	480687..481472	+	261	86605184	xth	CYA_0466	-	exodeoxyribonuclease III
449	 61.04	0	481554..482228	+	224	86605185	msrA	CYA_0467	-	methionine-S-sulfoxide reductase
450	 59.64	0	482242..483081	-	279	86605186	cysW	CYA_0468	-	sulfate ABC transporter, permease protein CysW
451	 59.66	0	483071..483883	-	270	86605187	cysT	CYA_0469	-	sulfate ABC transporter, permease protein CysT
452	 62.07	0	483890..484933	-	347	86605188	cysA	CYA_0470	-	sulfate transport system ATP-binding protein
453	 64.22	0	485108..486127	-	339	86605189	sbp	CYA_0471	-	sulfate ABC transporter, sulfate-binding protein
454	 64.63	0	486236..489031	-	931	86605190	-	CYA_0472	-	acetyltransferase
455	 60.13	0	489057..491687	-	876	86605191	adhE	CYA_0473	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
456	 54.50	-1	491778..492188	-	136	86605192	-	CYA_0474	-	OsmC family protein
457	 58.43	0	492370..493122	-	250	86605193	pflA	CYA_0475	-	pyruvate formate-lyase activating enzyme
458	 61.64	0	493284..493661	-	125	86605194	-	CYA_0476	-	pentapeptide repeat-containing protein
459	 61.21	0	493749..496055	-	768	86605195	pflB	CYA_0477	-	formate acetyltransferase
460	 64.96	+1	496453..497505	+	350	86605196	-	CYA_0478	-	putative 4-hydroxyphenylpyruvate dioxygenase
461	 54.64	-1	497587..497952	-	121	86605197	-	CYA_0479	-	response regulator
462	 62.38	0	498264..499196	-	310	86605198	-	CYA_0480	-	NAD-dependent glycerol-3-phosphate dehydrogenase family protein
463	 60.38	0	499316..500221	+	301	86605199	-	CYA_0481	-	alpha/beta fold family hydrolase
464	 58.46	0	500300..500689	+	129	86605200	gcvH	CYA_0482	-	glycine cleavage system protein H
465	 60.31	0	500693..501478	-	261	86605201	-	CYA_0483	-	GGDEF/FHA domain-containing protein
466	 64.66	+1	501723..502670	-	315	86605202	-	CYA_0484	-	NAD-dependent epimerase/dehydratase family protein
467	 65.12	+1	502667..504085	-	472	86605203	-	CYA_0485	-	UDP-glucose dehydrogenase
468	 63.06	0	504227..505141	+	304	86605204	-	CYA_0486	-	cation transporter
469	 58.19	0	505488..505664	+	58	86605205	-	CYA_0487	-	hypothetical protein
470	 60.71	0	505954..506490	+	178	86605206	-	CYA_0488	-	HNH endonuclease domain-containing protein
471	 62.61	0	506500..507435	-	311	86605207	-	CYA_0489	-	alpha/beta fold family hydrolase
472	 63.41	0	507552..508166	+	204	86605208	ruvA	CYA_0490	-	Holliday junction DNA helicase motor protein
473	 64.74	+1	508163..508786	+	207	86605209	nadD	CYA_0491	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
474	 59.44	0	508947..509195	-	82	86605210	psaC	CYA_0492	-	photosystem I subunit VII
475	 59.79	0	509434..509811	+	125	86605211	-	CYA_0493	-	hypothetical protein
476	 63.47	0	509831..510205	-	124	86605212	-	CYA_0494	-	hypothetical protein
477	 61.53	0	510208..510849	-	213	86605213	-	CYA_0495	-	hypothetical protein
478	 61.90	0	510982..512283	-	433	86605214	-	CYA_0496	-	putative gamma-glutamyl phosphate reductase
479	 58.94	0	512401..512853	-	150	86605215	-	CYA_0497	-	hypothetical protein
480	 56.42	0	512911..514188	-	425	86605216	-	CYA_0498	-	hypothetical protein
481	 54.93	-1	514185..515624	-	479	86605217	-	CYA_0499	-	hypothetical protein
482	 64.14	0	515750..516856	+	368	86605218	-	CYA_0500	-	putative glutamate--cysteine ligase
483	 64.49	0	518175..519785	-	536	86605219	-	CYA_0502	-	transporter, monovalent cation:proton antiporter-2 (CPA2) family/universal stress family protein
484	 60.71	0	520081..520668	-	195	86605220	-	CYA_0503	-	hypothetical protein
485	 62.21	0	520709..521404	-	231	86605221	hisIE	CYA_0504	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
486	 63.50	0	521665..523812	-	715	86605222	-	CYA_0505	-	polysaccharide deacetylase family protein
487	 56.30	0	524217..524708	-	163	86605223	-	CYA_0506	-	putative phycobilisome linker polypeptide, phycocyanin-associated, rod
488	 62.36	0	524898..525431	+	177	86605224	-	CYA_0507	-	hypothetical protein
489	 65.44	+1	527198..529402	+	734	86605227	-	CYA_0510	-	CobN/magnesium chelatase domain-containing protein
490	 60.00	0	529494..529808	-	104	86605228	-	CYA_0511	-	putative RNA-binding protein
491	 63.38	0	530063..532801	-	912	86605229	valS	CYA_0512	-	valyl-tRNA synthetase
492	 53.43	-1	532955..533377	+	140	86605230	-	CYA_0513	-	MerR family transcriptional regulator
493	 49.69	-2	533412..533570	+	52	86605231	-	CYA_0514	-	putative lipoprotein
494	 52.42	-1	533422..533835	+	137	86605232	-	CYA_0515	-	hypothetical protein
495	 58.39	0	533975..534796	-	273	86605233	cdsA	CYA_0516	-	phosphatidate cytidylyltransferase
496	 61.40	0	534777..534947	-	56	86605234	-	CYA_0517	-	hypothetical protein
497	 54.17	-1	534953..535072	+	39	86605235	-	CYA_0518	-	hypothetical protein
498	 60.48	0	535116..536117	+	333	86605236	-	CYA_0519	-	dehydrogenase E1 component, alpha subunit
499	 60.28	0	536338..537918	+	526	86605237	-	CYA_0520	-	NAD(P)H-quinone oxidoreductase subunit 4
500	 53.33	-1	538113..538292	-	59	86605238	-	CYA_0521	-	hypothetical protein
501	 64.35	0	538610..539299	-	229	86605239	-	CYA_0522	-	V4R domain-containing protein
502	 57.29	0	539316..539795	-	159	86605240	-	CYA_0523	-	putative phycobilisome protein
503	 58.48	0	539818..540696	-	292	86605241	-	CYA_0524	-	putative phycobilisome protein
504	 58.48	0	540751..541434	-	227	86605242	bchJ	CYA_0525	-	putative bacteriochlorophyll 4-vinyl reductase
505	 61.11	0	541607..542092	-	161	86605243	-	CYA_0526	-	iron-sulfur cluster-binding protein
506	 62.59	0	542537..543100	+	187	86605244	-	CYA_0528	-	putative phycobilisome linker polypeptide
507	 64.38	0	543064..544068	-	334	86605245	-	CYA_0527	-	taurine ABC transporter periplasmic substrate-binding protein
508	 67.40	+1	544262..545764	+	500	86605246	cobA/hemD	CYA_0529	-	uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase
509	 63.88	0	545801..546625	+	274	86605247	menB	CYA_0530	-	naphthoate synthase
510	 56.40	0	546670..549456	+	928	86605248	polA	CYA_0531	-	DNA polymerase I
511	 61.30	0	549522..549782	+	86	86605249	grxC	CYA_0532	-	glutaredoxin 3
512	 60.61	0	549834..550130	-	98	86605250	-	CYA_0533	-	hypothetical protein
513	 61.55	0	550279..550806	-	175	86605251	-	CYA_0534	-	UbiE/COQ5 family methlytransferase
514	 64.07	0	550816..551700	-	294	86605252	-	CYA_0535	-	arginase family protein
515	 58.59	0	551962..552357	+	131	86605253	psaD	CYA_0536	-	photosystem I reaction center subunit II
516	 60.26	0	552727..553335	-	202	86605254	-	CYA_0537	-	anti-oxidant AhpCTSA family protein
517	 56.19	0	553397..553501	+	34	86605255	-	CYA_0538	-	hypothetical protein
518	 64.14	0	553498..553734	+	78	86605256	-	CYA_0539	-	hypothetical protein
519	 56.98	0	553736..553993	-	85	86605257	-	CYA_0540	-	hypothetical protein
520	 47.92	-2	553993..554184	+	63	86605258	-	CYA_0541	-	hypothetical protein
521	 63.51	0	554249..555292	+	347	86605259	glpX	CYA_0542	-	fructose 1,6-bisphosphatase II
522	 61.50	0	555611..556906	+	431	86605260	hemA	CYA_0543	-	glutamyl-tRNA reductase
523	 56.48	0	557019..557126	+	35	86605261	-	CYA_0544	-	hypothetical protein
524	 62.05	0	557310..559127	+	605	86605262	typA	CYA_0545	-	GTP-binding protein TypA
525	 65.05	+1	559138..561246	-	702	86605263	-	CYA_0546	-	hypothetical protein
526	 66.06	+1	561284..562600	-	438	86605264	cinA	CYA_0547	-	competence/damage-inducible protein CinA
527	 62.02	0	562722..563216	-	164	86605265	-	CYA_0548	-	acetyltransferase
528	 51.99	-1	563304..563780	-	158	86605266	-	CYA_0549	-	ISSoc3, orfA transposase
529	 65.26	+1	565110..565394	-	94	86605267	-	CYA_0551	-	hypothetical protein
530	 64.82	+1	565575..566657	+	360	86605268	-	CYA_0553	-	CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
531	 60.43	0	566654..567022	-	122	86605269	-	CYA_0552	-	putative lipoprotein
60.19	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.