IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-3-3Ab



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.19 STD DEV: 4.44
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766
2760 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2558	 57.47	0	2706717..2708738	+	673	86607302	-	CYA_2692	-	FHA domain-containing protein
2559	 51.88	-1	2708985..2709437	+	150	86607303	-	CYA_2693	-	hypothetical protein
2560	 53.56	-1	2709546..2710163	+	205	86607304	-	CYA_2694	-	ISSoc2, resolvase
2561	 56.00	0	2710018..2711283	+	421	86607305	-	CYA_2695	-	ISSoc2, transposase
2562	 59.26	0	2711745..2712014	+	89	86607306	-	CYA_2696	-	hypothetical protein
2563	 58.26	0	2712109..2712762	+	217	86607307	-	CYA_2697	-	putative guanylate kinase
2564	 59.31	0	2714420..2715112	+	230	86607308	-	CYA_2699	-	DNA-binding response regulator
2565	 61.14	0	2715285..2716424	+	379	86607309	lgt-2	CYA_2700	-	prolipoprotein diacylglyceryl transferase
2566	 64.10	0	2718426..2719907	-	493	86607310	-	CYA_2702	-	M50 family peptidase
2567	 59.89	0	2719954..2721045	-	363	86607311	acsF	CYA_2703	-	magnesium-protoporphyrin IX monomethyl ester cyclase
2568	 64.93	+1	2721145..2725752	-	1535	86607312	gltS	CYA_2704	-	ferredoxin-dependent glutamate synthase
2569	 47.41	-2	2725833..2725967	-	44	86607313	-	CYA_2705	-	hypothetical protein
2570	 64.18	0	2726041..2726886	-	281	86607314	-	CYA_2706	-	hypothetical protein
2571	 59.60	0	2727113..2727310	+	65	86607315	-	CYA_2707	-	hypothetical protein
2572	 63.04	0	2727385..2728404	+	339	86607316	-	CYA_2708	-	drug exporter ABC transporter ATP-binding protein
2573	 46.37	-2	2728530..2728928	+	132	86607317	-	CYA_2709	-	ISSoc4, transposase orfA
2574	 45.33	-2	2728910..2729476	+	188	86607318	-	CYA_2710	-	ISSoc4, transposase orfB
2575	 61.40	0	2729586..2730440	+	284	86607319	-	CYA_2711	-	drug exporter ABC transporter permease
2576	 61.57	0	2730464..2730679	-	71	86607320	-	CYA_2712	-	hypothetical protein
2577	 58.76	0	2730798..2731442	+	214	86607321	-	CYA_2713	-	hypothetical protein
2578	 63.25	0	2731625..2734870	-	1081	86607322	-	CYA_2714	-	GAF domain/histidine kinase domain-containing protein
2579	 61.67	0	2734803..2736242	-	479	86607323	gltX	CYA_2715	-	glutamyl-tRNA synthetase
2580	 62.11	0	2736469..2736819	+	116	86607324	-	CYA_2716	-	hypothetical protein
2581	 59.58	0	2736917..2737156	+	79	86607325	-	CYA_2717	-	hypothetical protein
2582	 61.33	0	2737203..2738195	-	330	86607326	-	CYA_2718	-	hypothetical protein
2583	 56.38	0	2738226..2738507	-	93	86607327	-	CYA_2719	-	hypothetical protein
2584	 47.70	-2	2739836..2740009	+	57	90296799	-	CYA_2721	-	ISSoc3, orfA transposase, interruption-N
2585	 46.42	-2	2740043..2740447	+	134	86607328	-	CYA_2722	-	ISSoc4, transposase orfA
2586	 52.70	-1	2741015..2741329	+	104	90296800	-	CYA_2724	-	ISSoc3, orfA transposase, interruption-C
2587	 59.22	0	2741474..2741728	+	84	86607329	-	CYA_2725	-	hypothetical protein
2588	 62.62	0	2741783..2742499	+	238	86607330	-	CYA_2726	-	putative outer membrane protein
2589	 59.67	0	2742709..2744052	+	447	86607331	-	CYA_2727	-	response regulator
2590	 57.94	0	2744120..2744623	+	167	86607332	-	CYA_2728	-	hypothetical protein
2591	 66.44	+1	2744659..2745534	+	291	86607333	aroE	CYA_2729	-	shikimate 5-dehydrogenase
2592	 63.72	0	2745811..2747475	+	554	86607334	-	CYA_2730	-	hypothetical protein
2593	 50.00	-2	2747491..2747706	+	71	86607335	-	CYA_2731	-	hypothetical protein
2594	 60.38	0	2747913..2749709	-	598	86607336	argS	CYA_2732	-	arginyl-tRNA synthetase
2595	 51.43	-1	2749921..2750025	+	34	86607337	-	CYA_2733	-	hypothetical protein
2596	 63.62	0	2750055..2750906	+	283	86607338	-	CYA_2734	-	electron transfer flavoprotein, beta subunit/FixA family protein
2597	 64.16	0	2751044..2752162	+	372	86607339	-	CYA_2735	-	electron transfer flavoprotein, alpha subunit/FixB family protein
2598	 61.75	0	2752181..2752465	-	94	86607340	-	CYA_2736	-	hypothetical protein
2599	 58.79	0	2752755..2753897	+	380	86607341	-	CYA_2737	-	response regulator
2600	 51.94	-1	2754125..2754511	+	128	86607342	-	CYA_2738	-	response regulator
2601	 56.56	0	2754508..2754873	+	121	86607343	-	CYA_2739	-	response regulator
2602	 59.35	0	2755039..2755503	+	154	86607344	cheW	CYA_2740	-	chemotaxis protein cheW
2603	 62.51	0	2755812..2758262	+	816	86607345	-	CYA_2741	-	putative methyl-accepting chemotaxis protein
2604	 63.28	0	2758450..2763711	+	1753	86607346	-	CYA_2742	-	sensor histidine kinase/response regulator
2605	 59.22	0	2763846..2764490	+	214	86607347	-	CYA_2743	-	hypothetical protein
2606	 63.02	0	2764603..2766219	+	538	86607348	lnt	CYA_2744	-	apolipoprotein N-acyltransferase
2607	 62.21	0	2766533..2767138	+	201	86607349	cbiT	CYA_2746	-	precorrin-6B methylase
2608	 56.86	0	2767286..2767540	+	84	86607350	-	CYA_2747	-	hypothetical protein
2609	 58.68	0	2767600..2767962	-	120	86607351	-	CYA_2748	-	RlpA family protein, truncation
2610	 57.94	0	2768582..2768833	+	83	86607352	-	CYA_2750	-	ferredoxin-thioredoxin reductase, variable subunit
2611	 58.86	0	2768830..2769303	-	157	86607353	-	CYA_2749	-	hypothetical protein
2612	 62.13	0	2769533..2771449	+	638	86607354	hflB	CYA_2751	-	cell division protein FtsH
2613	 60.96	0	2771629..2773785	-	718	86607355	-	CYA_2752	-	putative alpha-glucan phosphorylase
2614	 64.67	+1	2774241..2775344	-	367	86607356	-	CYA_2753	-	SpoIID/LytB domain-containing protein
2615	 68.95	+1	2775738..2776262	-	174	86607357	-	CYA_2754	-	cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein
2616	 62.61	0	2776450..2777682	+	410	86607358	-	CYA_2755	-	S1C family peptidase
2617	 63.01	0	2778001..2779584	+	527	86607359	-	CYA_2756	-	protein kinase
2618	 53.17	-1	2779652..2780014	-	120	86607360	-	CYA_2757	-	hypothetical protein
2619	 62.04	0	2781031..2782305	-	424	86607361	-	CYA_2758	-	oxidoreductase, FAD-dependent
2620	 62.70	0	2782776..2785574	+	932	86607362	-	CYA_2759	-	cation transport ATPase
2621	 63.76	0	2785628..2786557	-	309	86607363	-	CYA_2760	-	NAD-dependent epimerase/dehydratase family protein
2622	 64.17	0	2786900..2787499	+	199	86607364	-	CYA_2761	-	hypothetical protein
2623	 61.90	0	2787500..2788486	-	328	86607365	hemB	CYA_2762	-	delta-aminolevulinic acid dehydratase
2624	 56.91	0	2789589..2789711	+	40	86607367	-	CYA_2764	-	hypothetical protein
2625	 47.01	-2	2789830..2789946	+	38	86607368	psbI	CYA_2765	-	photosystem II reaction center I protein I
2626	 58.50	0	2790058..2790498	-	146	86607369	-	CYA_2766	-	putative lipoprotein
2627	 50.00	-2	2790553..2790654	+	33	86607370	-	CYA_2768	-	hypothetical protein
2628	 62.09	0	2790651..2791283	-	210	86607371	-	CYA_2767	-	BioY family protein
2629	 63.27	0	2791340..2792134	+	264	86607372	-	CYA_2769	-	inositol monophosphatase family protein
2630	 57.52	0	2792561..2793019	-	152	86607373	-	CYA_2771	-	hypothetical protein
2631	 61.68	0	2793174..2795138	+	654	86607374	-	CYA_2773	-	sensor histidine kinase
2632	 62.26	0	2795117..2795275	-	52	86607375	-	CYA_2772	-	hypothetical protein
2633	 60.14	0	2795279..2795845	-	188	86607376	-	CYA_2774	-	putative cyclase/dehydrase
2634	 63.01	0	2795942..2796187	-	81	86607377	-	CYA_2775	-	hypothetical protein
2635	 55.56	-1	2796321..2796410	+	29	86607378	petN	CYA_2776	-	cytochrome b6-f complex, subunit VIII
2636	 61.38	0	2796426..2796614	+	62	86607379	-	CYA_2777	-	hypothetical protein
2637	 62.34	0	2796655..2797047	-	130	86607380	-	CYA_2778	-	hypothetical protein
2638	 64.47	0	2797035..2799542	-	835	86607381	-	CYA_2779	-	sensor histidine kinase
2639	 64.63	+1	2799667..2800452	-	261	86607382	-	CYA_2780	-	TatD family hydrolase
2640	 60.24	0	2800623..2801213	+	196	86607383	-	CYA_2781	-	hypothetical protein
2641	 59.80	0	2801731..2802735	+	334	86607384	-	CYA_2782	-	iron ABC transporter iron-binding subunit
2642	 64.03	0	2802736..2804442	+	568	86607385	-	CYA_2783	-	iron ABC transporter permease
2643	 62.09	0	2804390..2804542	+	50	86607386	-	CYA_2784	-	hypothetical protein
2644	 58.61	0	2804598..2805950	+	450	86607387	ugpB	CYA_2785	-	glycerol-3-phosphate ABC transporter, glycerol-3-phosphate binding protein
2645	 57.93	0	2806202..2807254	+	350	86607388	upgA	CYA_2786	-	glycerol-3-phosphate ABC transporter, permease protein
2646	 57.01	0	2807279..2807713	-	144	86607389	-	CYA_2787	-	hypothetical protein
2647	 53.62	-1	2807749..2808024	-	91	86607390	rpsO	CYA_2788	-	ribosomal protein S15
2648	 65.05	+1	2808113..2808793	+	226	86607391	-	CYA_2789	-	phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit-like protein
2649	 55.14	-1	2808860..2809345	-	161	86607392	apcD	CYA_2790	-	allophycocyanin alpha, B subunit
2650	 64.33	0	2809533..2810900	-	455	86607393	pilT-2	CYA_2791	-	twitching mobility protein PilT
2651	 60.72	0	2811142..2811831	-	229	86607394	folE	CYA_2792	-	GTP cyclohydrolase I
2652	 59.23	0	2811955..2812680	-	241	86607395	-	CYA_2793	-	short chain dehydrogenase
2653	 61.32	0	2812905..2814101	+	398	86607396	-	CYA_2794	-	iron ABC transporter ATP-binding protein
2654	 61.63	0	2814557..2815450	+	297	86607397	-	CYA_2795	-	chloroplast envelope protein translocase (CEPT or Tic-Toc) family protein
2655	 64.80	+1	2815492..2816349	+	285	86607398	-	CYA_2796	-	HemK family methyltransferase
2656	 62.26	0	2816491..2817261	+	256	86607399	-	CYA_2797	-	sensor histidine kinase
2657	 59.70	0	2817287..2817688	-	133	86607400	-	CYA_2798	-	putative photosystem II protein
60.19	MEAN

4.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.