IslandPath Analysis: Synechococcus sp. JA-3-3Ab



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.19   STD DEV: 4.44
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766
2760 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1996	 57.48	0	2116444..2117259	-	271	86606739	-	CYA_2099	-	hypothetical protein
1997	 64.45	0	2117544..2118944	-	466	86606740	-	CYA_2100	-	amidase
1998	 57.14	0	2118941..2119129	-	62	86606741	-	CYA_2101	-	hypothetical protein
1999	 61.41	0	2119223..2119831	-	202	86606742	-	CYA_2102	-	hypothetical protein
2000	 65.96	+1	2119978..2120823	-	281	86606743	-	CYA_2103	-	hypothetical protein
2001	 62.65	0	2120988..2121932	+	314	86606744	accD	CYA_2104	-	acetyl-CoA carboxylase subunit beta
2002	 57.33	0	2122212..2122586	+	124	86606745	-	CYA_2105	-	anti-anti-sigma factor
2003	 61.66	0	2122669..2123367	+	232	86606746	-	CYA_2107	-	hypothetical protein
2004	 62.65	0	2123364..2125556	-	730	86606747	-	CYA_2106	-	TrkA domain-containing protein
2005	 53.59	-1	2125625..2125777	-	50	86606748	-	CYA_2108	-	hypothetical protein
2006	 59.69	0	2125969..2127015	+	348	86606749	-	CYA_2109	-	iron ABC transporter substrate-binding protein
2007	 49.36	-2	2127006..2127473	+	155	86606750	-	CYA_2110	-	hypothetical protein
2008	 62.89	0	2127641..2129362	+	573	86606751	-	CYA_2111	-	iron ABC transporter permease
2009	 62.75	0	2129478..2130422	-	314	86606752	atpG	CYA_2112	-	F0F1 ATP synthase subunit gamma
2010	 61.28	0	2130468..2131988	-	506	86606753	atpA	CYA_2113	-	F0F1 ATP synthase subunit alpha
2011	 60.66	0	2132048..2132596	-	182	86606754	atpH	CYA_2114	-	F0F1 ATP synthase subunit delta
2012	 63.35	0	2132613..2133155	-	180	86606755	atpF	CYA_2115	-	F0F1 ATP synthase subunit B
2013	 63.08	0	2133209..2133682	-	157	86606756	-	CYA_2116	-	F0F1 ATP synthase subunit B'
2014	 62.20	0	2133777..2134022	-	81	86606757	atpE	CYA_2117	-	F0F1 ATP synthase subunit C
2015	 58.33	0	2134167..2134298	-	43	86606758	-	CYA_2118	-	hypothetical protein
2016	 54.89	-1	2134252..2134998	-	248	86606759	atpB	CYA_2119	-	F0F1 ATP synthase subunit A
2017	 56.96	0	2135004..2135384	-	126	86606760	-	CYA_2120	-	ATP synthase protein I
2018	 59.18	0	2135901..2136488	+	195	86606761	-	CYA_2121	-	hypothetical protein
2019	 62.22	0	2136485..2136799	+	104	86606762	-	CYA_2122	-	hypothetical protein
2020	 63.15	0	2136813..2138405	-	530	86606763	gpmI	CYA_2123	-	phosphoglyceromutase
2021	 61.33	0	2138613..2139137	-	174	86606764	-	CYA_2124	-	TPR repeat-containing protein
2022	 62.08	0	2139180..2139680	-	166	86606765	dps	CYA_2125	-	DNA starvation/stationary phase protection protein Dps
2023	 66.88	+1	2139799..2141178	-	459	86606766	trmE	CYA_2126	-	tRNA modification GTPase TrmE
2024	 62.05	0	2141368..2143968	+	866	86606767	glgP	CYA_2127	-	alpha-glucan phosphorylase
2025	 63.56	0	2144130..2145191	+	353	86606768	-	CYA_2128	-	TPR repeat-containing protein
2026	 51.94	-1	2145184..2145312	+	42	86606769	-	CYA_2129	-	hypothetical protein
2027	 58.86	0	2145309..2145833	+	174	86606770	ilvH	CYA_2130	-	acetolactate synthase 3 regulatory subunit
2028	 64.17	0	2145879..2146520	+	213	86606771	-	CYA_2131	-	hypothetical protein
2029	 63.45	0	2146709..2147455	-	248	86606772	-	CYA_2132	-	hypothetical protein
2030	 63.90	0	2147594..2148640	+	348	86606773	glk	CYA_2134	-	glucokinase
2031	 65.71	+1	2148619..2148723	-	34	86606774	-	CYA_2133	-	hypothetical protein
2032	 60.24	0	2148726..2149301	-	191	86606775	-	CYA_2135	-	NUDIX family hydrolase
2033	 64.13	0	2149406..2150902	+	498	86606776	trpE	CYA_2136	-	anthranilate synthase component I
2034	 61.38	0	2150921..2151715	+	264	86606777	-	CYA_2137	-	phytanoyl-CoA dioxygenase PhyH family protein
2035	 61.24	0	2151943..2152863	+	306	86606778	chlG	CYA_2138	-	bacteriochlorophyll/chlorophyll a synthase
2036	 61.81	0	2152880..2153023	+	47	86606779	-	CYA_2139	-	hypothetical protein
2037	 64.04	0	2153020..2153475	+	151	86606780	-	CYA_2140	-	hypothetical protein
2038	 61.24	0	2153498..2154880	-	460	86606781	-	CYA_2141	-	sugar  glycoside-pentoside-hexuronide (GPH):cation symporter family protein
2039	 63.64	0	2154964..2156349	-	461	86606782	aspA	CYA_2142	-	aspartate ammonia-lyase
2040	 57.68	0	2156386..2156652	-	88	86606783	-	CYA_2143	-	hypothetical protein
2041	 57.89	0	2156949..2157506	+	185	86606784	infC	CYA_2144	-	translation initiation factor IF-3
2042	 61.72	0	2157522..2157986	+	154	86606785	bcp	CYA_2145	-	bacterioferritin comigratory protein
2043	 64.60	0	2158113..2160044	+	643	86606786	-	CYA_2146	-	serine/threonine protein kinase
2044	 64.57	0	2160096..2161619	-	507	86606787	-	CYA_2147	-	GTP-binding domain-containing protein
2045	 60.22	0	2161837..2162022	-	61	86606788	-	CYA_2148	-	hypothetical protein
2046	 61.58	0	2161892..2162068	-	58	86606789	-	CYA_2149	-	hypothetical protein
2047	 61.93	0	2162126..2162611	-	161	86606790	-	CYA_2150	-	fasciclin domain-containing protein
2048	 64.74	+1	2162830..2164593	+	587	86606791	-	CYA_2151	-	phospholipase D/competence protein ComEA
2049	 63.11	0	2164603..2165586	-	327	86606792	accA	CYA_2152	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2050	 61.72	0	2165821..2166285	+	154	86606793	-	CYA_2154	-	hypothetical protein
2051	 59.83	0	2166261..2166743	-	160	86606794	-	CYA_2153	-	hypothetical protein
2052	 61.82	0	2166747..2169575	-	942	86606795	-	CYA_2155	-	sensor histindine kinase/response regulator
2053	 60.83	0	2169520..2170581	-	353	86606796	-	CYA_2156	-	putative methyl-accepting chemotaxis protein, truncation
2054	 55.28	-1	2170715..2171908	+	397	86606797	-	CYA_2158	-	ISSoc1, transposase
2055	 59.08	0	2171905..2172813	-	302	86606798	-	CYA_2157	-	hypothetical protein
2056	 58.44	0	2172824..2173066	-	80	86606799	-	CYA_2159	-	hypothetical protein
2057	 56.10	0	2173121..2173669	-	182	86606800	-	CYA_2160	-	CheW domain-containing protein
2058	 53.07	-1	2173777..2174151	-	124	86606801	-	CYA_2161	-	response regulator
2059	 58.15	0	2174199..2175443	-	414	86606802	-	CYA_2162	-	response regulator
2060	 62.08	0	2175829..2176308	-	159	86606803	-	CYA_2163	-	NUDIX family hydrolase
2061	 62.61	0	2176315..2177547	-	410	86606804	-	CYA_2164	-	hypothetical protein
2062	 59.20	0	2177602..2177802	-	66	86606805	-	CYA_2165	-	hypothetical protein
2063	 49.50	-2	2177856..2180051	-	731	86606806	-	CYA_2166	-	piwi domain-containing protein
2064	 62.39	0	2180122..2180589	-	155	86606807	-	CYA_2167	-	hypothetical protein
2065	 62.31	0	2180637..2181737	-	366	86606808	-	CYA_2168	-	putative lipoprotein
2066	 62.37	0	2181900..2185367	-	1155	86606809	nrdJ	CYA_2169	-	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatining
2067	 63.48	0	2185700..2186890	+	396	86606810	-	CYA_2170	-	M50B family peptidase
2068	 62.92	0	2187005..2188312	+	435	86606811	-	CYA_2171	-	M16B family peptidase
2069	 64.84	+1	2188312..2189625	+	437	86606812	-	CYA_2172	-	M16 family peptidase
2070	 65.97	+1	2189855..2190574	-	239	86606813	-	CYA_2173	-	hypothetical protein
2071	 60.38	0	2190749..2191273	+	174	86606814	-	CYA_2174	-	acetyltransferase
2072	 65.82	+1	2191277..2191987	+	236	86606815	-	CYA_2175	-	hypothetical protein
2073	 62.92	0	2191994..2192713	-	239	86606816	-	CYA_2176	-	Thf1-like protein
2074	 64.16	0	2192866..2193981	+	371	86606817	proB	CYA_2177	-	gamma-glutamyl kinase
2075	 60.76	0	2193986..2195272	-	428	86606818	-	CYA_2178	-	major facilitator transporter
2076	 61.03	0	2195310..2196320	-	336	86606819	gap-3	CYA_2179	-	glyceraldehyde-3-phosphate dehydrogenase, type I
2077	 65.98	+1	2196566..2197444	-	292	86606820	murI	CYA_2180	-	glutamate racemase
2078	 64.74	+1	2197595..2199466	-	623	86606821	-	CYA_2181	-	N-acetylmuramoyl-L-alanine amidase
2079	 53.77	-1	2199575..2200729	+	384	86606822	-	CYA_2182	-	hypothetical protein
2080	 54.41	-1	2200785..2203076	-	763	86606823	-	CYA_2183	-	nuclease domain-containing protein
2081	 63.37	0	2203378..2204712	-	444	86606824	-	CYA_2184	-	sensor histidine kinase
2082	 64.36	0	2204738..2205343	-	201	86606825	miaE	CYA_2185	-	tRNA-(MS[2]IO[6]A)-hydroxylase
2083	 63.59	0	2205545..2206615	-	356	86606826	-	CYA_2186	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2084	 66.89	+1	2207155..2208510	-	451	86606827	-	CYA_2187	-	RND family efflux transporter MFP subunit
2085	 62.96	0	2208774..2209502	-	242	86606829	sufR	CYA_2189	-	iron-sulfur cluster biosynthesis transcriptional regulator SufR
2086	 56.09	0	2209665..2211101	+	478	86606830	sufB	CYA_2190	-	cysteine desulfurase activator complex subunit SufB
2087	 47.12	-2	2211346..2211744	+	132	86606831	mscL	CYA_2192	-	large conductance mechanosensitive channel protein
2088	 50.00	-2	2211725..2211826	-	33	86606832	-	CYA_2191	-	hypothetical protein
2089	 55.51	-1	2211842..2212657	+	271	86606833	sufC	CYA_2193	-	FeS assembly ATPase SufC
2090	 62.87	0	2212654..2213943	+	429	86606834	sufD	CYA_2194	-	FeS assembly protein SufD
2091	 52.98	-1	2214617..2215069	+	150	86606835	-	CYA_2195	-	AbrB family transcriptional regulator
2092	 64.45	0	2215206..2216606	+	466	86606836	-	CYA_2196	-	hypothetical protein
2093	 60.80	0	2216928..2217353	-	141	86606837	-	CYA_2197	-	nodulation efficiency family protein
2094	 62.08	0	2217437..2217676	-	79	86606838	-	CYA_2198	-	hypothetical protein
2095	 56.08	0	2217819..2218007	+	62	86606839	-	CYA_2200	-	hypothetical protein
60.19	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.