version 1.0
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766 2760 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1840 53.24 -1 1948622..1949239 + 205 86606583 - CYA_1937 - ISSoc2, resolvase 1841 55.66 -1 1949094..1950374 + 426 86606584 - CYA_1938 - ISSoc2, transposase 1842 66.22 +1 1950384..1951052 - 222 86606585 - CYA_1939 - hypothetical protein 1843 61.14 0 1951110..1951634 - 174 86606586 - CYA_1940 - thermonuclease 1844 63.20 0 1951778..1952932 - 384 86606587 - CYA_1941 - hypothetical protein 1845 59.88 0 1953067..1953891 - 274 86606588 icc CYA_1942 - putative 3'',5''-cyclic-nucleotide phosphodiesterase 1846 59.51 0 1954079..1954609 - 176 86606589 psbP CYA_1943 - photosystem II oxygen evolving complex protein PsbP 1847 58.43 0 1954758..1957040 - 760 86606590 - CYA_1944 - RelA/SpoT family protein 1848 62.99 0 1957239..1958108 - 289 86606591 rbgA CYA_1945 - ribosomal biogenesis GTPase 1849 58.85 0 1958288..1958773 + 161 86606592 - CYA_1946 - iron-sulfur cluster-binding protein 1850 65.19 +1 1958780..1960201 + 473 86606593 - CYA_1947 - carbohydrate kinase 1851 63.47 0 1960584..1962242 - 552 86606594 - CYA_1948 - hypothetical protein 1852 62.20 0 1962280..1962861 - 193 86606595 - CYA_1949 - AhpC/TSA family protein 1853 62.56 0 1962899..1963336 - 145 86606596 - CYA_1950 - hypothetical protein 1854 65.07 +1 1963340..1963903 - 187 86606597 - CYA_1951 - putative lipoprotein 1855 63.09 0 1964218..1965027 - 269 86606598 - CYA_1953 - RNA methyltransferase 1856 63.54 0 1965094..1965669 + 191 86606599 - CYA_1954 - putative lipoprotein 1857 63.38 0 1965676..1966587 + 303 86606600 lpxC CYA_1955 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1858 56.07 0 1966855..1968081 + 408 86606601 - CYA_1956 - ISSoc5, transposase 1859 60.28 0 1968161..1968661 + 166 86606602 fabZ CYA_1957 - (3R)-hydroxymyristoyl-ACP dehydratase 1860 51.36 -1 1968830..1969306 - 158 86606603 - CYA_1958 - ISSoc3, orfA transposase 1861 58.33 0 1969262..1970533 + 423 86606604 - CYA_1959 - ISSoc3, orfB transposase 1862 62.61 0 1970741..1971652 + 303 86606605 lpxA CYA_1960 - UDP-N-acetylglucosamine acyltransferase 1863 64.90 +1 1971649..1972839 + 396 86606606 lpxB CYA_1961 - lipid-A-disaccharide synthase 1864 64.37 0 1972842..1973888 - 348 86606607 - CYA_1962 - hypothetical protein 1865 62.38 0 1973893..1974942 - 349 86606608 - CYA_1963 - mandelate racemase/muconate lactonizing enzyme family protein 1866 60.38 0 1975121..1976758 + 545 86606609 - CYA_1964 - acetolactate synthase 1867 61.20 0 1976915..1978981 + 688 86606610 - CYA_1965 - type IV pilus assembly protein PilB 1868 63.48 0 1979154..1980284 + 376 86606611 pilT-1 CYA_1966 - twitching motility protein 1869 60.64 0 1980445..1981671 + 408 86606612 pilC CYA_1967 - type IV pilus assembly protein PilC 1870 67.64 +1 1981723..1986432 + 1569 86606613 - CYA_1968 - alpha-2-macroglobulin family protein 1871 66.30 +1 1986510..1988141 + 543 86606614 - CYA_1969 - phosphoglucomutase 1872 63.05 0 1988278..1989189 + 303 86606615 - CYA_1971 - alpha/beta fold family hydrolase 1873 58.87 0 1989186..1989647 - 153 86606616 - CYA_1970 - hypothetical protein 1874 61.67 0 1989936..1992536 - 866 86606617 - CYA_1973 - glycosy hydrolase family protein 1875 65.17 +1 1992867..1993736 - 289 86606618 folD CYA_1974 - FolD bifunctional protein 1876 58.65 0 1993838..1994074 - 78 86606619 xseB CYA_1975 - exodeoxyribonuclease VII, small subunit 1877 67.39 +1 1994055..1995290 - 411 86606620 xseA CYA_1976 - exodeoxyribonuclease VII large subunit 1878 54.88 -1 1995330..1996559 + 409 86606621 - CYA_1977 - ISSoc7, transposase 1879 62.09 0 1996733..1997869 + 378 86606622 - CYA_1978 - hypothetical protein 1880 61.60 0 1997989..1998363 + 124 86606623 - CYA_1979 - hypothetical protein 1881 67.83 +1 1998386..1999501 + 371 86606624 - CYA_1980 - pentapeptide repeat-containing protein 1882 62.04 0 1999601..2001976 + 791 86606625 - CYA_1981 - putative phosphoketolase 1883 65.79 +1 2002148..2003170 + 340 86606626 mraY CYA_1982 - phospho-N-acetylmuramoyl-pentapeptide-transferase 1884 60.52 0 2003653..2004384 - 243 86606627 - CYA_1984 - hypothetical protein 1885 60.68 0 2004448..2005065 - 205 86606628 - CYA_1985 - pyridoxamine 5'-phosphate oxidase family protein 1886 60.10 0 2005093..2006355 - 420 86606629 - CYA_1986 - acetyltransferase 1887 58.56 0 2006475..2007128 - 217 86606630 - CYA_1987 - hypothetical protein 1888 62.72 0 2007472..2008917 + 481 86606631 murA CYA_1988 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1889 63.13 0 2009039..2010169 + 376 86606632 - CYA_1990 - geranylgeranyl reductase family protein 1890 61.73 0 2010166..2010651 - 161 86606633 - CYA_1989 - sensor histidine kinase 1891 62.90 0 2010771..2011592 - 273 86606634 - CYA_1991 - OmpA family protein 1892 59.67 0 2011735..2012391 - 218 86606635 - CYA_1992 - S24 family peptidase 1893 56.41 0 2012542..2012814 + 90 86606636 - CYA_1993 - hypothetical protein 1894 58.13 0 2012908..2013270 + 120 86606637 - CYA_1994 - NADH dehydrogenase subunit A 1895 60.82 0 2013267..2014001 + 244 86606638 - CYA_1995 - NADH dehydrogenase subunit B 1896 60.62 0 2014003..2014548 + 181 86606639 - CYA_1996 - NADH dehydrogenase subunit J 1897 56.90 0 2014596..2014769 + 57 86606640 - CYA_1997 - hypothetical protein 1898 62.92 0 2014781..2016007 + 408 86606641 - CYA_1998 - hypothetical protein 1899 60.39 0 2015755..2016264 + 169 86606642 - CYA_1999 - hypothetical protein 1900 64.12 0 2016332..2017822 - 496 86606643 - CYA_2000 - hypothetical protein 1901 55.50 -1 2017853..2019133 - 426 86606644 - CYA_2001 - ISSoc2, transposase 1902 53.56 -1 2018988..2019605 - 205 86606645 - CYA_2002 - ISSoc2, resolvase 1903 61.20 0 2019791..2021053 - 420 86606646 - CYA_2003 - hypothetical protein 1904 63.98 0 2021157..2021975 + 272 86606647 - CYA_2004 - hypothetical protein 1905 60.53 0 2022286..2023263 + 325 86606648 - CYA_2005 - nuclease domain-containing protein 1906 62.03 0 2023324..2024142 + 272 86606649 - CYA_2006 - TPR repeat-containing protein 1907 60.16 0 2024321..2024443 + 40 86606650 - CYA_2007 - hypothetical protein 1908 62.38 0 2024694..2025113 + 139 86606651 - CYA_2008 - hypothetical protein 1909 61.19 0 2025296..2026390 - 364 86606652 - CYA_2009 - MazG family protein 1910 46.42 -2 2026943..2027347 + 134 86606653 - CYA_2010 - ISSoc4, transposase orfA 1911 53.04 -1 2027934..2028476 + 180 86606654 - CYA_2012 - putative transposase, truncation 1912 64.73 +1 2028491..2030812 - 773 86606655 recG CYA_2013 - ATP-dependent DNA helicase RecG 1913 65.66 +1 2031074..2031172 - 32 86606656 psaM CYA_2014 - photosystem I reaction center subunit XII 1914 64.06 0 2031422..2032726 + 434 86606657 glyA CYA_2015 - serine hydroxymethyltransferase 1915 61.83 0 2032760..2033854 + 364 86606658 - CYA_2016 - glycosyl transferase, group 4 family protein 1916 65.06 +1 2033862..2034485 + 207 86606659 - CYA_2017 - hypothetical protein 1917 60.80 0 2034498..2035025 - 175 86606660 apt CYA_2018 - adenine phosphoribosyltransferase 1918 59.13 0 2035204..2035641 + 145 86606661 - CYA_2019 - hypothetical protein 1919 64.43 0 2035763..2037637 - 624 86606662 - CYA_2020 - M3B family peptidase 1920 66.34 +1 2037846..2039396 + 516 86606663 - CYA_2021 - Mg chelatase-like protein 1921 65.62 +1 2039458..2040600 - 380 86606664 recF CYA_2022 - recombination protein F 1922 66.38 +1 2040704..2041396 - 230 86606665 - CYA_2023 - helix-turn-helix domain-containing protein 1923 60.08 0 2042952..2043209 - 85 86606666 - CYA_2026 - hypothetical protein 1924 63.91 0 2043231..2043920 - 229 86606667 - CYA_2027 - DNA-binding response regulator 1925 63.36 0 2043999..2044391 + 130 86606668 - CYA_2028 - hypothetical protein 1926 61.86 0 2044446..2045318 - 290 86606669 - CYA_2029 - iron chelate ABC transporter substrate-binding protein 1927 68.11 +1 2045348..2046667 - 439 86606670 - CYA_2030 - TonB family protein 1928 62.62 0 2046708..2049128 - 806 86606671 - CYA_2031 - TonB-dependent heme/hemoglobin receptor family protein 1929 67.38 +1 2049166..2050011 - 281 86606672 - CYA_2032 - iron chelate ABC transporter ATP-binding protein 1930 68.68 +1 2050008..2051051 - 347 86606673 - CYA_2033 - iron chelate ABC transporter permease protein 1931 52.38 -1 2051443..2052723 - 426 86606674 - CYA_2034 - putative transposase 1932 65.23 +1 2052972..2055620 + 882 86606675 mutS CYA_2035 - DNA mismatch repair protein 1933 64.22 0 2055623..2056153 - 176 86606676 - CYA_2036 - hypothetical protein 1934 59.82 0 2056745..2057839 + 364 86606677 - CYA_2037 - RNA polymerase sigma factor SigC 1935 64.46 0 2057850..2059484 - 544 86606678 mviN CYA_2038 - integral membrane protein MviN 1936 63.66 0 2059650..2060015 - 121 86606679 - CYA_2039 - hypothetical protein 1937 65.46 +1 2060229..2061056 - 275 86606680 cpcE-2 CYA_2040 - phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit 1938 62.24 0 2061089..2061946 - 285 86606681 cpcC CYA_2041 - phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1939 61.49 0 2062221..2062703 - 160 86606682 cpcA-2 CYA_2042 - phycocyanin, alpha subunit 60.19 MEAN 4.44 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0