version 1.0
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766 2760 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1302 55.66 -1 1385449..1386729 + 426 86606046 - CYA_1375 - ISSoc2, transposase 1303 56.25 0 1386920..1387207 + 95 86606047 - CYA_1376 - hypothetical protein 1304 63.04 0 1387257..1387394 - 45 86606048 - CYA_1377 - hypothetical protein 1305 60.90 0 1387369..1387680 + 103 86606049 - CYA_1378 - hypothetical protein 1306 65.25 +1 1388536..1389240 + 234 86606050 - CYA_1381 - DnaJ domain-containing protein 1307 59.62 0 1389237..1389761 - 174 86606051 - CYA_1380 - hypothetical protein 1308 62.08 0 1389990..1390490 - 166 86606052 - CYA_1382 - hypothetical protein 1309 59.11 0 1390490..1390939 - 149 86606053 - CYA_1383 - FUR family transcriptional regulator 1310 53.40 -1 1390974..1391297 - 107 86606054 - CYA_1384 - hypothetical protein 1311 66.49 +1 1391449..1392576 + 375 86606055 - CYA_1386 - hypothetical protein 1312 61.44 0 1392525..1392830 - 101 86606056 clpS CYA_1385 - ATP-dependent Clp protease adaptor 1313 62.36 0 1393034..1394890 - 618 86606057 - CYA_1387 - hypothetical protein 1314 63.38 0 1394953..1395348 - 131 86606058 - CYA_1388 - hypothetical protein 1315 66.07 +1 1395439..1396113 + 224 86606059 - CYA_1389 - riboflavin biosynthesis protein RibD domain-containing protein 1316 58.47 0 1396327..1396509 - 60 86606060 - CYA_1390 - hypothetical protein 1317 55.22 -1 1396721..1396921 + 66 86606061 - CYA_1391 - hypothetical protein 1318 64.50 0 1397091..1398893 + 600 86606062 - CYA_1393 - TPR repeat-containing protein 1319 60.79 0 1398863..1399594 - 243 86606063 - CYA_1392 - DNA-binding response regulator 1320 63.13 0 1400048..1400953 - 301 86606064 recO CYA_1394 - DNA repair protein RecO 1321 64.25 0 1400950..1401651 - 233 86606065 deoC CYA_1395 - deoxyribose-phosphate aldolase 1322 63.71 0 1401835..1402206 + 123 86606066 - CYA_1396 - hypothetical protein 1323 63.45 0 1402203..1402730 + 175 86606067 - CYA_1397 - hypothetical protein 1324 60.41 0 1402734..1404284 - 516 86606068 metG CYA_1398 - methionyl-tRNA synthetase 1325 62.71 0 1404262..1406232 + 656 86606069 - CYA_1399 - hypothetical protein 1326 64.83 +1 1406262..1406588 + 108 86606070 - CYA_1400 - hypothetical protein 1327 63.93 0 1406653..1407894 + 413 86606071 - CYA_1401 - hypothetical protein 1328 61.50 0 1407996..1408382 - 128 86606072 - CYA_1402 - hypothetical protein 1329 64.16 0 1408487..1409005 + 172 86606073 petC CYA_1403 - cytochrome b6-f complex iron-sulfur subunit 1330 61.99 0 1409483..1410466 + 327 86606074 petA CYA_1404 - apocytochrome f 1331 63.10 0 1410528..1411340 - 270 86606075 - CYA_1405 - PhzF family phenazine biosynthesis protein 1332 58.65 0 1411585..1411896 + 103 86606076 groES CYA_1406 - co-chaperonin GroES 1333 61.22 0 1411963..1413597 + 544 86606077 groEL CYA_1407 - chaperonin GroEL 1334 65.10 +1 1413771..1414598 + 275 86606078 - CYA_1408 - hypothetical protein 1335 64.35 0 1414754..1415917 + 387 86606079 - CYA_1409 - inositol-5-monophosphate dehydrogenase 1336 55.29 -1 1416275..1417909 + 544 86606080 - CYA_1411 - S-layer domain-containing protein 1337 56.99 0 1418354..1419934 + 526 86606081 - CYA_1412 - putative S-layer protein 1338 60.83 0 1420078..1420917 - 279 86606082 - CYA_1413 - hypothetical protein 1339 62.78 0 1420985..1422682 - 565 86606083 - CYA_1414 - SulP family sulfate permease 1340 63.48 0 1422999..1425539 + 846 86606084 gyrA CYA_1415 - DNA gyrase subunit A 1341 58.59 0 1425730..1426125 + 131 86606085 - CYA_1416 - hypothetical protein 1342 68.96 +1 1426263..1427396 + 377 86606086 - CYA_1417 - glycerate kinase 1343 54.60 -1 1427568..1427882 + 104 86606087 psbW CYA_1418 - photosystem II reaction center protein Psb28 1344 63.20 0 1427888..1429417 - 509 86606088 gatA CYA_1419 - aspartyl/glutamyl-tRNA amidotransferase subunit A 1345 61.32 0 1429598..1429915 - 105 86606089 - CYA_1420 - hypothetical protein 1346 58.41 0 1430023..1430361 - 112 86606090 - CYA_1421 - hypothetical protein 1347 59.85 0 1430501..1431175 - 224 86606091 - CYA_1423 - hypothetical protein 1348 59.58 0 1431242..1431622 - 126 86606092 - CYA_1424 - hypothetical protein 1349 73.33 +2 1431698..1431787 - 29 86606093 - CYA_1425 - hypothetical protein 1350 58.33 0 1431851..1432150 - 99 86606094 - CYA_1426 - ferredoxin, 2Fe-2S 1351 52.38 -1 1432352..1432498 + 48 86606095 - CYA_1427 - hypothetical protein 1352 59.55 0 1432665..1434956 + 763 86606096 - CYA_1428 - putative lipoprotein 1353 56.23 0 1435208..1437325 + 705 86606097 - CYA_1430 - putative lipoprotein 1354 53.70 -1 1437306..1437467 - 53 86606098 - CYA_1429 - hypothetical protein 1355 65.48 +1 1437521..1438027 + 168 86606099 - CYA_1431 - pentapeptide repeat-containing protein 1356 57.49 0 1438097..1438597 + 166 86606100 - CYA_1432 - hypothetical protein 1357 62.91 0 1438736..1439401 + 221 86606101 - CYA_1433 - putative lipoprotein 1358 49.46 -2 1439403..1439495 + 30 86606102 - CYA_1434 - hypothetical protein 1359 54.45 -1 1439922..1441664 + 580 86606103 - CYA_1435 - putative lipoprotein 1360 61.74 0 1441806..1443266 - 486 86606104 - CYA_1436 - M8 family peptidase 1361 55.16 -1 1443425..1444693 + 422 86606105 - CYA_1437 - hypothetical protein 1362 55.56 -1 1445169..1446401 - 410 86606106 - CYA_1438 - ISSoc2, transposase 1363 53.03 -1 1446256..1446849 - 197 86606107 - CYA_1439 - ISSoc2, resolvase 1364 54.03 -1 1446917..1447375 - 152 86606108 - CYA_1440 - ISSoc14, transposase, truncation 1365 62.30 0 1447464..1448585 - 373 86606109 - CYA_1441 - carbohydrate ABC transporter ATP-binding protein 1366 55.33 -1 1448815..1449255 - 146 86606110 - CYA_1442 - small heat shock protein (HSP20) family protein 1367 57.69 0 1449434..1449745 - 103 86606111 - CYA_1443 - hypothetical protein 1368 65.26 +1 1449821..1452454 - 877 86606112 acnB CYA_1444 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1369 61.79 0 1452529..1453614 - 361 86606113 prfA CYA_1445 - peptide chain release factor 1 1370 54.95 -1 1453685..1453906 - 73 86606114 rpmE CYA_1446 - 50S ribosomal protein L31 1371 64.98 +1 1453984..1454397 - 137 86606115 rpsI CYA_1447 - 30S ribosomal protein S9 1372 61.40 0 1454394..1454849 - 151 86606116 rplM CYA_1448 - 50S ribosomal protein L13 1373 65.62 +1 1454899..1455762 - 287 86606117 truA CYA_1449 - tRNA pseudouridine synthase A 1374 66.95 +1 1455768..1456118 - 116 86606118 rplQ CYA_1450 - 50S ribosomal protein L17 1375 59.14 0 1456191..1457186 - 331 86606119 rpoA CYA_1451 - DNA-directed RNA polymerase subunit alpha 1376 61.24 0 1457309..1457695 - 128 86606120 rpsK CYA_1452 - 30S ribosomal protein S11 1377 64.06 0 1457784..1458167 - 127 86606121 rpsM CYA_1453 - 30S ribosomal protein S13 1378 63.25 0 1458381..1458497 - 38 86606122 rpmJ CYA_1454 - ribosomal protein L36 1379 67.39 +1 1458692..1460623 + 643 86606123 - CYA_1455 - hypothetical protein 1380 65.80 +1 1460682..1461719 + 345 86606124 - CYA_1456 - hypothetical protein 1381 63.46 0 1461999..1463558 + 519 86606125 - CYA_1457 - dolichyl-phosphate-mannose-protein mannosyltransferase 1382 61.33 0 1463667..1464716 + 349 86606126 - CYA_1458 - oxidoreductase, NAD-binding 1383 63.84 0 1464769..1465722 + 317 86606127 - CYA_1459 - hypothetical protein 1384 62.33 0 1465840..1466739 - 299 86606128 - CYA_1460 - prephenate dehydratase 1385 57.74 0 1466743..1467078 - 111 86606129 - CYA_1461 - competence protein 1386 65.97 +1 1467548..1468837 - 429 86606130 alr CYA_1462 - alanine racemase 1387 62.82 0 1468878..1469918 - 346 86606131 sppA-2 CYA_1463 - signal peptide peptidase SppA, 36K type 1388 63.18 0 1470893..1472410 + 505 86606132 - CYA_1465 - hypothetical protein 1389 66.58 +1 1472452..1474845 + 797 86606133 priA CYA_1466 - primosome assembly protein PriA 1390 59.35 0 1475005..1476111 + 368 86606134 - CYA_1467 - isopropylmalate/isohomocitrate dehydrogenase family protein 1391 65.80 +1 1476143..1477069 - 308 86606135 - CYA_1468 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 1392 53.25 -1 1477084..1477329 + 81 86606136 - CYA_1469 - hypothetical protein 1393 63.11 0 1477378..1478613 + 411 86606137 - CYA_1470 - hypothetical protein 1394 55.74 -1 1478619..1479899 - 426 86606138 - CYA_1471 - ISSoc2, transposase 1395 53.40 -1 1479754..1480371 - 205 86606139 - CYA_1472 - ISSoc2, resolvase 1396 63.90 0 1481805..1482455 + 216 86606140 - CYA_1473 - putative cob(I)alamin adenosyltransferase 1397 61.78 0 1482540..1483133 + 197 86606141 dcd CYA_1474 - deoxycytidine triphosphate deaminase 1398 63.56 0 1483225..1484415 + 396 86606142 queA CYA_1476 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1399 62.81 0 1484412..1485188 - 258 86606143 - CYA_1475 - hydrolase, haloacid dehalogenase family protein 1400 63.35 0 1485217..1486212 - 331 86606144 - CYA_1477 - aldo/keto reductase family oxidoreductase 1401 61.71 0 1486245..1486910 + 221 86606145 - CYA_1478 - hypothetical protein 60.19 MEAN 4.44 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0