IslandPath Analysis: Synechococcus sp. JA-3-3Ab



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.19   STD DEV: 4.44
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766
2760 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
76	 57.54	0	77913..78449	+	178	86604809	-	CYA_0079	-	fasciclin domain-containing protein
77	 57.94	0	78557..79003	-	148	86604810	-	CYA_0080	-	hypothetical protein
78	 64.83	+1	79112..80905	+	597	86604811	menD	CYA_0082	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
79	 64.71	+1	80829..81851	-	340	86604812	miaA	CYA_0081	-	tRNA delta(2)-isopentenylpyrophosphate transferase
80	 62.53	0	82003..82824	+	273	86604813	-	CYA_0083	-	hypothetical protein
81	 62.03	0	82982..83692	-	236	86604814	rpe	CYA_0084	-	ribulose-phosphate 3-epimerase
82	 60.22	0	83852..84037	-	61	86604815	-	CYA_0085	-	hypothetical protein
83	 63.99	0	84185..84595	+	136	86604816	-	CYA_0086	-	glyoxalase family protein
84	 66.67	+1	84592..86178	+	528	86604817	-	CYA_0088	-	carbohydrate kinase family protein
85	 62.94	0	86175..87005	-	276	86604818	-	CYA_0087	-	putative undecaprenol kinase
86	 61.84	0	87209..87829	-	206	86604819	-	CYA_0089	-	hypothetical protein
87	 53.23	-1	88002..88187	-	61	86604820	-	CYA_0090	-	hypothetical protein
88	 59.14	0	88306..89487	-	393	86604821	-	CYA_0091	-	ISSoc1, transposase
89	 59.45	0	89675..90367	-	230	86604822	-	CYA_0092	-	hypothetical protein
90	 55.56	-1	90367..91023	-	218	86604823	-	CYA_0093	-	response regulator
91	 59.96	0	91262..92380	+	372	86604824	-	CYA_0094	-	UbiE/COQ5 family methlytransferase
92	 60.40	0	92497..92991	+	164	86604825	-	CYA_0095	-	hypothetical protein
93	 59.13	0	93105..93449	+	114	86604826	-	CYA_0096	-	hypothetical protein
94	 63.97	0	93643..95199	+	518	86604827	-	CYA_0097	-	major facilitator transporter
95	 58.82	0	95249..95350	+	33	86604828	-	CYA_0098	-	hypothetical protein
96	 62.80	0	95382..96572	+	396	86604829	-	CYA_0099	-	glycosyl transferase, group 1
97	 61.92	0	96917..98413	+	498	86604830	-	CYA_0100	-	GAF/SpoIIE domain-containing protein
98	 57.53	0	98507..98725	+	72	86604831	-	CYA_0102	-	hypothetical protein
99	 61.11	0	98709..98816	-	35	86604832	-	CYA_0101	-	hypothetical protein
100	 62.65	0	98857..100326	+	489	86604833	argH	CYA_0103	-	argininosuccinate lyase
101	 61.19	0	100418..101038	+	206	86604834	-	CYA_0104	-	hypothetical protein
102	 59.92	0	101454..101705	+	83	86604835	-	CYA_0105	-	hypothetical protein
103	 62.59	0	101922..103049	+	375	86604836	-	CYA_0107	-	UDP-N-acetylglucosamine 2-epimerase
104	 56.59	0	103038..103166	-	42	86604837	-	CYA_0106	-	hypothetical protein
105	 57.03	0	103453..103701	-	82	86604838	-	CYA_0108	-	hypothetical protein
106	 62.39	0	104219..105340	+	373	86604839	ftsZ	CYA_0109	-	cell division protein FtsZ
107	 64.61	0	105410..106381	+	323	86604840	ddlB	CYA_0110	-	D-alanine--D-alanine ligase B
108	 62.42	0	106401..106871	-	156	86604841	-	CYA_0111	-	hypothetical protein
109	 58.71	0	107039..107704	+	221	86604842	chlM	CYA_0112	-	Mg-protoporphyrin IX methyl transferase
110	 62.78	0	107756..108475	-	239	86604843	-	CYA_0113	-	HEAT repeat-containing PBS lyase
111	 62.52	0	108623..109369	-	248	86604844	-	CYA_0114	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
112	 61.64	0	109442..110236	-	264	86604845	-	CYA_0115	-	hypothetical protein
113	 61.80	0	110298..111221	-	307	86604846	-	CYA_0116	-	hypothetical protein
114	 59.38	0	111443..113350	+	635	86604847	-	CYA_0117	-	endonuclease/exonuclease/phosphatase family protein
115	 63.27	0	113491..114609	-	372	86604848	cbiD	CYA_0118	-	cobalt-precorrin-6A synthase
116	 57.63	0	114833..115186	+	117	86604849	-	CYA_0119	-	hypothetical protein
117	 60.64	0	115188..115784	-	198	86604850	def	CYA_0120	-	peptide deformylase
118	 55.77	0	116244..116555	-	103	86604851	-	CYA_0121	-	hypothetical protein
119	 61.47	0	116559..116885	-	108	86604852	-	CYA_0122	-	hypothetical protein
120	 56.50	0	116885..117061	-	58	86604853	-	CYA_0123	-	phycobilisome degradation family protein
121	 46.77	-2	117159..117344	-	61	86604854	-	CYA_0124	-	hypothetical protein
122	 54.76	-1	117441..117692	+	83	86604855	-	CYA_0125	-	putative RNA-binding protein
123	 61.30	0	117811..119115	+	434	86604856	-	CYA_0126	-	putative nuclease SbcCD, D subunit
124	 53.25	-1	119457..119702	+	81	86604857	-	CYA_0127	-	hypothetical protein
125	 63.19	0	119962..121887	-	641	86604858	speA	CYA_0128	-	arginine decarboxylase
126	 65.71	+1	122379..123428	+	349	86604859	pstS-1	CYA_0129	-	phosphate ABC transporter, phosphate-binding protein
127	 62.64	0	123678..125564	+	628	86604860	dnaK-1	CYA_0130	-	molecular chaperone DnaK
128	 59.75	0	125763..126731	+	322	86604861	-	CYA_0132	-	DnaJ family protein
129	 64.33	0	126728..128053	-	441	86604862	-	CYA_0131	-	putative glycolate oxidase, iron-sulfur subunit
130	 63.24	0	128274..128594	+	106	86604863	-	CYA_0134	-	hypothetical protein
131	 62.09	0	128591..130471	-	626	86604864	-	CYA_0133	-	long-chain-fatty-acid-CoA ligase-like protein
132	 59.05	0	130865..131179	-	104	86604865	cas2-1	CYA_0135	-	CRISPR-associated Cas2 family protein
133	 63.14	0	131558..133147	-	529	86604867	-	CYA_0137	-	hypothetical protein
134	 54.42	-1	134068..134361	-	97	86604868	-	CYA_0138	-	hypothetical protein
135	 61.08	0	134674..135246	-	190	86604869	-	CYA_0139	-	hypothetical protein
136	 60.75	0	135265..135906	-	213	86604870	-	CYA_0140	-	hypothetical protein
137	 58.11	0	136943..137164	-	73	86604871	-	CYA_0142	-	CAB/ELIP/HLIP family protein
138	 63.16	0	137266..138777	-	503	86604872	ilvA	CYA_0143	-	threonine dehydratase
139	 63.98	0	138937..139419	+	160	86604873	-	CYA_0144	-	pyridoxamine 5'-phosphate oxidase family protein
140	 65.89	+1	139456..140352	-	298	86604874	-	CYA_0145	-	alpha/beta fold family hydrolase
141	 62.70	0	140472..141203	+	243	86604875	-	CYA_0146	-	WecB/TagA/CpsF family glycosyl transferase
142	 63.03	0	141729..142415	+	228	86604876	ftsE	CYA_0147	-	cell division ATP-binding protein FtsE
143	 58.63	0	142592..144856	-	754	86604877	metE-1	CYA_0148	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
144	 55.78	0	145761..147386	+	541	86604878	-	CYA_0149	-	peptide/opine/nickel ABC transporter substrate-binding protein
145	 56.49	0	147371..148372	+	333	86604879	-	CYA_0150	-	peptide/opine/nickel ABC transporter permease
146	 58.72	0	148369..149262	+	297	86604880	-	CYA_0151	-	peptide/opine/nickel ABC transporter permease
147	 61.61	0	149267..150196	+	309	86604881	-	CYA_0152	-	peptide/opine/nickel uptake ABC transporter ATP-binding protein
148	 58.37	0	150183..150857	+	224	86604882	-	CYA_0153	-	peptide/opine/nickel uptake ABC transporter ATP-binding protein
149	 60.68	0	150950..151867	+	305	86604883	-	CYA_0154	-	putative permease
150	 57.08	0	151961..152200	+	79	86604884	-	CYA_0155	-	DNA-directed RNA polymerase subunit omega
151	 52.11	-1	152388..152861	-	157	86604885	-	CYA_0156	-	ISSoc3, orfA transposase
152	 58.57	0	152817..154088	+	423	86604886	-	CYA_0158	-	ISSoc3, orfB transposase
153	 64.58	0	154078..154842	-	254	86604887	-	CYA_0157	-	small conductance mechanosensitive ion channel (MscS) family protein
154	 59.61	0	154882..156000	-	372	86604888	cax	CYA_0159	-	calcium/proton exchanger
155	 60.21	0	156188..156946	-	252	86604889	-	CYA_0160	-	hypothetical protein
156	 66.01	+1	157001..158224	-	407	86604890	coaBC	CYA_0161	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
157	 53.93	-1	158574..158942	+	122	86604891	-	CYA_0162	-	hypothetical protein
158	 64.39	0	159202..159990	+	262	86604892	-	CYA_0163	-	hypothetical protein
159	 62.49	0	159947..161716	+	589	86604893	-	CYA_0165	-	hypothetical protein
160	 65.62	+1	161686..162930	-	414	86604894	ubiH	CYA_0164	-	2-octaprenyl-6-methoxyphenyl hydroxylase
161	 63.14	0	162933..163925	-	330	86604895	-	CYA_0166	-	cyclopropane-fatty-acyl-phospholipid synthase family protein
162	 62.03	0	164140..166383	-	747	86604896	metE-2	CYA_0167	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
163	 53.70	-1	167117..167602	-	161	86604897	moaE	CYA_0169	-	molybdopterin converting factor, subunit 2
164	 48.11	-2	167603..167866	-	87	86604898	-	CYA_0170	-	putative molybdopterin converting factor, subunit 1
165	 52.24	-1	167841..168935	-	364	86604899	moaC	CYA_0171	-	molybdenum cofactor biosynthesis protein C
166	 51.12	-2	168940..169878	-	312	86604900	moaA	CYA_0172	-	molybdenum cofactor biosynthesis protein A
167	 54.90	-1	169880..171043	-	387	86604901	moeA	CYA_0173	-	molybdopterin biosynthesis protein MoeA
168	 54.22	-1	171021..171494	-	157	86604902	-	CYA_0174	-	hypothetical protein
169	 51.17	-2	174066..174407	+	113	86604903	-	CYA_0177	-	pilin domain-containing protein
170	 65.08	+1	174653..175975	+	440	86604904	pyrC	CYA_0178	-	dihydroorotase
171	 60.45	0	176347..176748	+	133	86604905	-	CYA_0179	-	hypothetical protein
172	 62.28	0	176758..179400	-	880	86604906	clpB	CYA_0180	-	ATP-dependent chaperone protein ClpB
173	 62.16	0	179593..181878	-	761	86604907	zam	CYA_0181	-	acetazolamide conferring resistance protein Zam
174	 58.57	0	181936..182577	-	213	86604908	phoU	CYA_0182	-	phosphate transport system regulatory protein PhoU
175	 63.43	0	182785..184113	+	442	86604909	-	CYA_0183	-	hypothetical protein
60.19	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.