IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.39   STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
841	 62.05	0	822453..822842	+	129	78212397	-	Syncc9605_0853	-	hypothetical protein
842	 65.18	0	822842..824119	+	425	78212398	-	Syncc9605_0854	-	cytosine deaminase
843	 65.56	0	824138..825487	+	449	78212399	-	Syncc9605_0855	-	hypothetical protein
844	 62.64	0	825491..826036	-	181	78212400	-	Syncc9605_0856	-	hypothetical protein
845	 64.03	0	826033..827247	-	404	78212401	-	Syncc9605_0857	-	FolC bifunctional protein
846	 63.68	0	827248..828552	-	434	78212402	-	Syncc9605_0858	-	acetylornithine aminotransferase
847	 58.63	0	828661..828909	+	82	78212403	-	Syncc9605_0859	-	hypothetical protein
848	 49.67	-1	830270..830728	+	152	78212404	-	Syncc9605_0860	-	hypothetical protein
849	 40.55	-2	831149..831439	-	96	78212405	-	Syncc9605_0861	-	hypothetical protein
850	 45.75	-2	832432..832737	-	101	78212406	-	Syncc9605_0862	-	hypothetical protein
851	 45.87	-2	834383..834709	-	108	78212407	-	Syncc9605_0863	-	hypothetical protein
852	 51.22	-1	834947..835192	-	81	78212408	-	Syncc9605_0864	-	hypothetical protein
853	 52.89	-1	835706..836830	-	374	78212409	-	Syncc9605_0865	-	hypothetical protein
854	 61.44	0	837232..838533	-	433	78212410	-	Syncc9605_0866	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
855	 47.79	-1	838801..839049	+	82	78212411	-	Syncc9605_0867	-	hypothetical protein
856	 62.00	0	839157..839906	+	249	78212412	-	Syncc9605_0868	-	tRNA/rRNA methyltransferase (SpoU)
857	 61.40	0	839903..841345	+	480	78212413	-	Syncc9605_0869	-	dihydrolipoamide dehydrogenase
858	 60.59	0	841386..842273	+	295	78212414	trpC	Syncc9605_0870	-	indole-3-glycerol-phosphate synthase
859	 65.32	0	842327..842995	+	222	78212415	-	Syncc9605_0871	-	hypothetical protein
860	 61.26	0	842978..843310	-	110	78212416	-	Syncc9605_0872	-	peptidase S26 family protein
861	 61.18	0	843361..843834	-	157	78212417	-	Syncc9605_0873	-	putative nickel-containing superoxide dismutase precursor (NISOD)
862	 63.17	0	843877..844476	-	199	78212418	-	Syncc9605_0874	-	peptidylprolyl isomerase
863	 63.64	0	844528..844857	-	109	78212419	-	Syncc9605_0875	-	hypothetical protein
864	 66.81	+1	844911..846326	+	471	78212420	-	Syncc9605_0876	-	apolipoprotein N-acyltransferase
865	 64.41	0	846278..847429	-	383	78212421	trmU	Syncc9605_0877	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
866	 64.90	0	847481..849004	+	507	78212422	-	Syncc9605_0878	-	hypothetical protein
867	 60.06	0	849184..850122	+	312	78212423	-	Syncc9605_0879	-	type II alternative sigma-70 family RNA polymerase sigma factor
868	 61.44	0	850168..851277	-	369	78212424	-	Syncc9605_0880	-	pyruvate dehydrogenase (lipoamide)
869	 61.85	0	851355..853346	+	663	78212425	-	Syncc9605_0881	-	hypothetical protein
870	 62.14	0	853415..854893	+	492	78212426	-	Syncc9605_0882	-	signal recognition particle subunit FFH/SRP54 (srp54)
871	 62.25	0	854972..855379	+	135	161353764	rpsP	Syncc9605_0883	-	30S ribosomal protein S16
872	 63.76	0	855388..856383	+	331	78212428	-	Syncc9605_0884	-	PhoH-like phosphate starvation-inducible protein
873	 60.66	0	856452..857183	+	243	78212429	-	Syncc9605_0885	-	hypothetical protein
874	 64.37	0	857270..857791	-	173	78212430	-	Syncc9605_0886	-	hypothetical protein
875	 63.68	0	857867..858802	+	311	78212431	era	Syncc9605_0887	-	GTP-binding protein Era
876	 63.79	0	858841..859743	+	300	78212432	-	Syncc9605_0888	-	hypothetical protein
877	 62.99	0	859765..860226	+	153	78212433	-	Syncc9605_0889	-	hypothetical protein
878	 64.84	0	860233..861438	+	401	78212434	-	Syncc9605_0890	-	tRNA (Guanine37-N(1)-) methyltransferase
879	 61.45	0	861442..861882	+	146	78212435	-	Syncc9605_0891	-	hypothetical protein
880	 64.89	0	861879..862553	+	224	78212436	-	Syncc9605_0892	-	putative circadian phase modifier CpmA
881	 60.87	0	862558..862695	-	45	78212437	-	Syncc9605_0893	-	hypothetical protein
882	 63.12	0	862815..863774	-	319	78212438	-	Syncc9605_0894	-	hypothetical protein
883	 62.10	0	863793..864011	-	72	78212439	-	Syncc9605_0895	-	thiamine biosynthesis protein ThiS
884	 64.97	0	864015..865073	-	352	78212440	-	Syncc9605_0896	-	thiamine-phosphate pyrophosphorylase
885	 66.67	+1	865208..866149	-	313	78212441	-	Syncc9605_0897	-	FMN adenylyltransferase / riboflavin kinase
886	 63.28	0	866204..866764	+	186	78212442	-	Syncc9605_0898	-	hypothetical protein
887	 64.81	0	866749..867558	-	269	78212443	-	Syncc9605_0899	-	exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase
888	 64.78	0	867630..868637	+	335	78212444	-	Syncc9605_0900	-	phenylalanyl-tRNA synthetase, alpha subunit
889	 56.54	0	868749..869360	+	203	78212445	-	Syncc9605_0901	-	hypothetical protein
890	 58.52	0	869387..870307	-	306	78212446	-	Syncc9605_0902	-	hypothetical protein
891	 56.99	0	870355..872349	-	664	78212447	-	Syncc9605_0903	-	NHL repeat-containing protein
892	 44.17	-2	872445..872684	-	79	78212448	-	Syncc9605_0904	-	hypothetical protein
893	 51.90	-1	872881..873909	+	342	78212449	-	Syncc9605_0905	-	neuromedin U
894	 55.98	0	876876..878429	+	517	78212450	-	Syncc9605_0910	-	hypothetical protein
895	 53.74	0	879816..880805	-	329	78212451	-	Syncc9605_0913	-	hypothetical protein
896	 64.47	0	880986..881894	+	302	78212452	ppnK	Syncc9605_0914	-	inorganic polyphosphate/ATP-NAD kinase
897	 63.57	0	881891..882568	+	225	78212453	-	Syncc9605_0915	-	two component transcriptional regulator
898	 65.54	0	882575..883018	+	147	78212454	-	Syncc9605_0916	-	hypothetical protein
899	 67.62	+1	883026..884285	-	419	78212455	-	Syncc9605_0917	-	putative precorrin-6y methylase
900	 63.79	0	884318..885256	+	312	78212456	-	Syncc9605_0918	-	hypothetical protein
901	 60.91	0	885387..885629	+	80	78212457	-	Syncc9605_0919	-	hypothetical protein
902	 64.11	0	885709..888207	+	832	78212458	-	Syncc9605_0920	-	hypothetical protein
903	 62.30	0	888524..889096	+	190	78212459	-	Syncc9605_0921	-	hypothetical protein
904	 69.05	+1	889111..890160	+	349	78212460	-	Syncc9605_0922	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
905	 63.24	0	890163..890891	-	242	78212461	-	Syncc9605_0923	-	hypothetical protein
906	 63.47	0	890940..891596	-	218	78212462	-	Syncc9605_0924	-	hypothetical protein
907	 61.44	0	891681..893555	+	624	78212463	-	Syncc9605_0925	-	FtsH-2 peptidase
908	 63.11	0	893601..894557	+	318	78212464	-	Syncc9605_0926	-	ornithine carbamoyltransferase
909	 55.45	0	894575..894877	+	100	78212465	-	Syncc9605_0927	-	hypothetical protein
910	 62.22	0	894889..895113	+	74	78212466	-	Syncc9605_0928	-	hypothetical protein
911	 64.10	0	895181..895804	+	207	78212467	-	Syncc9605_0929	-	LexA repressor
912	 53.66	0	896620..896865	+	81	78212468	-	Syncc9605_0930	-	hypothetical protein
913	 50.68	-1	896862..897818	+	318	78212469	-	Syncc9605_0931	-	hypothetical protein
914	 53.60	0	897879..898559	+	226	78212470	-	Syncc9605_0932	-	hypothetical protein
915	 51.75	-1	898829..899485	+	218	78212471	-	Syncc9605_0933	-	hypothetical protein
916	 55.13	0	899552..900097	+	181	78212472	-	Syncc9605_0934	-	hypothetical protein
917	 51.44	-1	900562..900804	-	80	78212473	-	Syncc9605_0935	-	hypothetical protein
918	 51.08	-1	900783..901289	-	168	78212474	-	Syncc9605_0936	-	phage integrase family protein
919	 55.17	0	902235..902495	+	86	78212475	-	Syncc9605_0937	-	hypothetical protein
920	 55.26	0	902492..902938	+	148	78212476	-	Syncc9605_0938	-	hypothetical protein
921	 54.27	0	903558..904799	-	413	78212477	-	Syncc9605_0939	-	phage integrase family protein
922	 51.49	-1	904879..905181	-	100	78212478	-	Syncc9605_0940	-	hypothetical protein
923	 55.56	0	905297..905539	+	80	78212479	-	Syncc9605_0941	-	hypothetical protein
924	 54.35	0	905903..906868	+	321	78212480	-	Syncc9605_0942	-	hypothetical protein
925	 55.97	0	908947..909582	-	211	78212481	-	Syncc9605_0945	-	phage integrase family protein
926	 49.21	-1	909830..910081	+	83	78212482	-	Syncc9605_0946	-	hypothetical protein
927	 57.31	0	910081..910497	+	138	78212483	-	Syncc9605_0947	-	hypothetical protein
928	 56.76	0	911278..911721	+	147	78212484	-	Syncc9605_0948	-	hypothetical protein
929	 55.42	0	912231..912479	-	82	78212485	-	Syncc9605_0949	-	hypothetical protein
930	 56.82	0	912626..913072	-	148	78212486	-	Syncc9605_0950	-	hypothetical protein
931	 52.61	-1	913888..914136	+	82	78212487	-	Syncc9605_0951	-	hypothetical protein
932	 55.64	0	914330..914728	-	132	78212488	-	Syncc9605_0952	-	hypothetical protein
933	 56.63	0	914759..915067	-	102	78212489	-	Syncc9605_0953	-	hypothetical protein
934	 55.28	0	915080..915325	-	81	78212490	-	Syncc9605_0954	-	hypothetical protein
935	 60.12	0	915387..915722	-	111	78212491	-	Syncc9605_0955	-	hypothetical protein
936	 53.29	0	915939..916424	+	161	78212492	-	Syncc9605_0956	-	hypothetical protein
937	 52.08	-1	918062..918301	-	79	78212493	-	Syncc9605_0959	-	hypothetical protein
938	 51.91	-1	918394..918576	+	60	78212494	-	Syncc9605_0960	-	hypothetical protein
939	 59.09	0	918901..919296	+	131	78212495	-	Syncc9605_0961	-	hypothetical protein
940	 49.56	-1	919753..920091	+	112	78212496	-	Syncc9605_0962	-	hypothetical protein
59.39	MEAN

6.29	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.