IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
786	 61.16	0	762940..763266	-	108	78212342	-	Syncc9605_0798	-	SMR family multidrug efflux transporter
787	 58.54	0	763332..765152	+	606	78212343	-	Syncc9605_0799	-	GTP-binding protein LepA
788	 64.60	0	765394..766266	+	290	78212344	-	Syncc9605_0800	-	putative ABC transporter, oligopeptides
789	 62.96	0	766286..766501	+	71	78212345	-	Syncc9605_0801	-	hypothetical protein
790	 63.77	0	766741..767430	-	229	78212346	-	Syncc9605_0802	-	tRNA (guanosine-2'-O-)-methyltransferase
791	 63.59	0	767471..767893	+	140	78212347	-	Syncc9605_0803	-	methylated-DNA--protein-cysteine methyltransferase
792	 63.68	0	767897..769234	+	445	78212348	-	Syncc9605_0804	-	sun protein
793	 59.96	0	769244..771286	-	680	78212349	-	Syncc9605_0805	-	penicillin-binding protein 1A
794	 60.90	0	771283..772236	-	317	78212350	-	Syncc9605_0806	-	bacteriochlorophyll/chlorophyll a synthase
795	 60.65	0	772248..772463	-	71	78212351	-	Syncc9605_0807	-	hypothetical protein
796	 64.20	0	772520..773290	+	256	78212352	-	Syncc9605_0808	-	imidazole glycerol phosphate synthase subunit HisF
797	 67.52	+1	773287..773988	+	233	78212353	-	Syncc9605_0809	-	demethylmenaquinone methyltransferase
798	 59.83	0	774068..774418	+	116	78212354	-	Syncc9605_0810	-	hypothetical protein
799	 41.59	-2	774489..775142	-	217	78212355	-	Syncc9605_0811	-	hypothetical protein
800	 61.50	0	775570..776460	+	296	78212356	glyQ	Syncc9605_0812	-	glycyl-tRNA synthetase subunit alpha
801	 65.65	0	776587..778362	+	591	78212357	-	Syncc9605_0813	-	ComEC/Rec2-related protein
802	 46.14	-2	779590..780198	-	202	78212358	-	Syncc9605_0814	-	hypothetical protein
803	 48.34	-1	780710..782875	+	721	78212359	-	Syncc9605_0815	-	glycogen debranching protein GlgX
804	 47.78	-1	782927..785086	+	719	78212360	-	Syncc9605_0816	-	hypothetical protein
805	 40.74	-2	785163..786566	+	467	78212361	-	Syncc9605_0817	-	hypothetical protein
806	 42.27	-2	786568..788211	-	547	78212362	-	Syncc9605_0818	-	hypothetical protein
807	 44.29	-2	788453..789319	+	288	78212363	-	Syncc9605_0819	-	hypothetical protein
808	 45.08	-2	789329..791098	+	589	78212364	-	Syncc9605_0820	-	thiamine pyrophosphate-requiring enzyme
809	 41.28	-2	791194..792174	-	326	78212365	-	Syncc9605_0821	-	hypothetical protein
810	 39.83	-2	792293..792754	+	153	78212366	-	Syncc9605_0822	-	hypothetical protein
811	 43.89	-2	792866..793585	+	239	78212367	-	Syncc9605_0823	-	ethyl tert-butyl ether degradation EthD
812	 41.39	-2	793638..795089	+	483	78212368	-	Syncc9605_0824	-	ankyrin
813	 42.51	-2	795134..795580	+	148	78212369	-	Syncc9605_0825	-	hypothetical protein
814	 43.67	-2	795607..797115	+	502	78212370	-	Syncc9605_0826	-	cholesterol oxidase
815	 42.69	-2	797172..797609	+	145	78212371	-	Syncc9605_0827	-	hypothetical protein
816	 46.01	-2	797795..798559	+	254	78212372	-	Syncc9605_0828	-	hypothetical protein
817	 38.01	-2	798556..799431	+	291	78212373	-	Syncc9605_0829	-	hypothetical protein
818	 38.85	-2	799456..800361	+	301	78212374	-	Syncc9605_0830	-	proline-specific peptidase
819	 41.03	-2	800339..801196	+	285	78212375	-	Syncc9605_0831	-	hypothetical protein
820	 40.10	-2	801232..801807	+	191	78212376	-	Syncc9605_0832	-	hypothetical protein
821	 44.22	-2	801951..803585	-	544	78212377	-	Syncc9605_0833	-	porin
822	 46.29	-2	803701..804804	-	367	78212378	-	Syncc9605_0834	-	hypothetical protein
823	 55.19	0	804994..805263	-	89	78212379	-	Syncc9605_0835	-	hypothetical protein
824	 60.00	0	805326..806555	+	409	78212380	-	Syncc9605_0836	-	glycosyltransferase
825	 59.68	0	806587..807345	+	252	78212381	-	Syncc9605_0837	-	undecaprenyl-phosphate galactosephosphotransferase
826	 62.27	0	807353..808399	-	348	78212382	-	Syncc9605_0838	-	adenosylcobinamide-phosphate synthase
827	 60.14	0	808492..809487	-	331	78212383	-	Syncc9605_0839	-	ketol-acid reductoisomerase
828	 59.37	0	809550..810152	-	200	78212384	clpP	Syncc9605_0840	-	ATP-dependent Clp protease proteolytic subunit
829	 58.41	0	810206..810883	-	225	78212385	-	Syncc9605_0841	-	ATP-dependent Clp protease-like protein
830	 60.02	0	810899..812056	-	385	78212386	-	Syncc9605_0842	-	nucleotide binding protein, PINc
831	 62.87	0	812096..813280	+	394	78212387	-	Syncc9605_0843	-	coproporphyrinogen III oxidase, anaerobic
832	 51.95	-1	813693..813923	-	76	78212388	-	Syncc9605_0844	-	enoyl-CoA hydratase
833	 63.48	0	814057..814872	-	271	78212389	-	Syncc9605_0845	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
834	 62.70	0	815055..816164	-	369	78212390	-	Syncc9605_0846	-	cell division protein FtsZ
835	 62.37	0	816282..817118	-	278	78212391	-	Syncc9605_0847	-	cell division protein FtsQ
836	 61.31	0	817115..817525	-	136	78212392	-	Syncc9605_0848	-	hypothetical protein
837	 60.11	0	817549..818601	-	350	78212393	-	Syncc9605_0849	-	D-alanine--D-alanine ligase
838	 62.15	0	818653..820047	-	464	78212394	-	Syncc9605_0850	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
839	 65.05	0	820098..821210	+	370	78212395	-	Syncc9605_0851	-	hypothetical protein
840	 66.30	+1	821210..822292	+	360	78212396	-	Syncc9605_0852	-	hypothetical protein
841	 62.05	0	822453..822842	+	129	78212397	-	Syncc9605_0853	-	hypothetical protein
842	 65.18	0	822842..824119	+	425	78212398	-	Syncc9605_0854	-	cytosine deaminase
843	 65.56	0	824138..825487	+	449	78212399	-	Syncc9605_0855	-	hypothetical protein
844	 62.64	0	825491..826036	-	181	78212400	-	Syncc9605_0856	-	hypothetical protein
845	 64.03	0	826033..827247	-	404	78212401	-	Syncc9605_0857	-	FolC bifunctional protein
846	 63.68	0	827248..828552	-	434	78212402	-	Syncc9605_0858	-	acetylornithine aminotransferase
847	 58.63	0	828661..828909	+	82	78212403	-	Syncc9605_0859	-	hypothetical protein
848	 49.67	-1	830270..830728	+	152	78212404	-	Syncc9605_0860	-	hypothetical protein
849	 40.55	-2	831149..831439	-	96	78212405	-	Syncc9605_0861	-	hypothetical protein
850	 45.75	-2	832432..832737	-	101	78212406	-	Syncc9605_0862	-	hypothetical protein
851	 45.87	-2	834383..834709	-	108	78212407	-	Syncc9605_0863	-	hypothetical protein
852	 51.22	-1	834947..835192	-	81	78212408	-	Syncc9605_0864	-	hypothetical protein
853	 52.89	-1	835706..836830	-	374	78212409	-	Syncc9605_0865	-	hypothetical protein
854	 61.44	0	837232..838533	-	433	78212410	-	Syncc9605_0866	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
855	 47.79	-1	838801..839049	+	82	78212411	-	Syncc9605_0867	-	hypothetical protein
856	 62.00	0	839157..839906	+	249	78212412	-	Syncc9605_0868	-	tRNA/rRNA methyltransferase (SpoU)
857	 61.40	0	839903..841345	+	480	78212413	-	Syncc9605_0869	-	dihydrolipoamide dehydrogenase
858	 60.59	0	841386..842273	+	295	78212414	trpC	Syncc9605_0870	-	indole-3-glycerol-phosphate synthase
859	 65.32	0	842327..842995	+	222	78212415	-	Syncc9605_0871	-	hypothetical protein
860	 61.26	0	842978..843310	-	110	78212416	-	Syncc9605_0872	-	peptidase S26 family protein
861	 61.18	0	843361..843834	-	157	78212417	-	Syncc9605_0873	-	putative nickel-containing superoxide dismutase precursor (NISOD)
862	 63.17	0	843877..844476	-	199	78212418	-	Syncc9605_0874	-	peptidylprolyl isomerase
863	 63.64	0	844528..844857	-	109	78212419	-	Syncc9605_0875	-	hypothetical protein
864	 66.81	+1	844911..846326	+	471	78212420	-	Syncc9605_0876	-	apolipoprotein N-acyltransferase
865	 64.41	0	846278..847429	-	383	78212421	trmU	Syncc9605_0877	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
866	 64.90	0	847481..849004	+	507	78212422	-	Syncc9605_0878	-	hypothetical protein
867	 60.06	0	849184..850122	+	312	78212423	-	Syncc9605_0879	-	type II alternative sigma-70 family RNA polymerase sigma factor
868	 61.44	0	850168..851277	-	369	78212424	-	Syncc9605_0880	-	pyruvate dehydrogenase (lipoamide)
869	 61.85	0	851355..853346	+	663	78212425	-	Syncc9605_0881	-	hypothetical protein
870	 62.14	0	853415..854893	+	492	78212426	-	Syncc9605_0882	-	signal recognition particle subunit FFH/SRP54 (srp54)
871	 62.25	0	854972..855379	+	135	161353764	rpsP	Syncc9605_0883	-	30S ribosomal protein S16
872	 63.76	0	855388..856383	+	331	78212428	-	Syncc9605_0884	-	PhoH-like phosphate starvation-inducible protein
873	 60.66	0	856452..857183	+	243	78212429	-	Syncc9605_0885	-	hypothetical protein
874	 64.37	0	857270..857791	-	173	78212430	-	Syncc9605_0886	-	hypothetical protein
875	 63.68	0	857867..858802	+	311	78212431	era	Syncc9605_0887	-	GTP-binding protein Era
876	 63.79	0	858841..859743	+	300	78212432	-	Syncc9605_0888	-	hypothetical protein
877	 62.99	0	859765..860226	+	153	78212433	-	Syncc9605_0889	-	hypothetical protein
878	 64.84	0	860233..861438	+	401	78212434	-	Syncc9605_0890	-	tRNA (Guanine37-N(1)-) methyltransferase
879	 61.45	0	861442..861882	+	146	78212435	-	Syncc9605_0891	-	hypothetical protein
880	 64.89	0	861879..862553	+	224	78212436	-	Syncc9605_0892	-	putative circadian phase modifier CpmA
881	 60.87	0	862558..862695	-	45	78212437	-	Syncc9605_0893	-	hypothetical protein
882	 63.12	0	862815..863774	-	319	78212438	-	Syncc9605_0894	-	hypothetical protein
883	 62.10	0	863793..864011	-	72	78212439	-	Syncc9605_0895	-	thiamine biosynthesis protein ThiS
884	 64.97	0	864015..865073	-	352	78212440	-	Syncc9605_0896	-	thiamine-phosphate pyrophosphorylase
885	 66.67	+1	865208..866149	-	313	78212441	-	Syncc9605_0897	-	FMN adenylyltransferase / riboflavin kinase
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.