IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
725	 62.35	0	700535..701206	-	223	78212281	-	Syncc9605_0733	-	phosphoribosylanthranilate isomerase
726	 62.19	0	701269..702519	+	416	78212282	-	Syncc9605_0734	-	hypothetical protein
727	 65.09	0	702477..703175	-	232	78212283	-	Syncc9605_0735	-	protein ligase
728	 65.62	0	703221..703988	+	255	78212284	-	Syncc9605_0736	-	hypothetical protein
729	 64.54	0	703998..704468	-	156	78212285	-	Syncc9605_0737	-	hypothetical protein
730	 58.77	0	704543..704656	+	37	78212286	psaM	Syncc9605_0738	-	photosystem I reaction center subunit XII
731	 58.09	0	704796..705098	+	100	78212287	-	Syncc9605_0739	-	hypothetical protein
732	 62.99	0	705168..706118	+	316	78212288	-	Syncc9605_0740	-	protochlorophyllide oxidoreductase
733	 58.25	0	706181..707071	-	296	78212289	chlL	Syncc9605_0741	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
734	 54.11	0	709534..710943	-	469	78212290	-	Syncc9605_0745	-	amine oxidase (flavin-containing)
735	 64.00	0	711237..712811	-	524	78212291	-	Syncc9605_0746	-	light-independent protochlorophyllide reductase subunit B
736	 65.41	0	712816..714093	-	425	78212292	-	Syncc9605_0747	-	light-independent protochlorophyllide reductase subunit N
737	 61.90	0	714207..714584	-	125	78212293	-	Syncc9605_0748	-	hypothetical protein
738	 62.09	0	714703..715488	+	261	78212294	-	Syncc9605_0749	-	hypothetical protein
739	 61.39	0	715508..716113	-	201	78212295	-	Syncc9605_0750	-	Ham1 protein-like
740	 64.74	0	716443..716754	+	103	78212296	-	Syncc9605_0751	-	carboxysome shell peptide, CsoS1
741	 60.52	0	716826..718241	+	471	78212297	rbcL	Syncc9605_0752	-	ribulose bisophosphate carboxylase
742	 59.65	0	718301..718642	+	113	78212298	-	Syncc9605_0753	-	ribulose 1,5-bisphosphate carboxylase small subunit
743	 65.40	0	718744..721104	+	786	78212299	-	Syncc9605_0754	-	putative carboxysome structural peptide CsoS2
744	 62.08	0	721112..722857	+	581	78212300	-	Syncc9605_0755	-	putative carboxysome shell polypeptide CsoS3
745	 62.82	0	722860..723171	+	103	78212301	-	Syncc9605_0756	-	putative carboxysome peptide A
746	 60.32	0	723171..723422	+	83	78212302	-	Syncc9605_0757	-	putative carboxysome peptide B
747	 66.85	+1	723476..724012	+	178	78212303	-	Syncc9605_0758	-	carbon dioxide concentrating mechanism protein CcmK
748	 61.03	0	724124..725968	+	614	78212304	-	Syncc9605_0759	-	NAD(P)H-quinone oxidoreductase subunit F
749	 62.24	0	725979..727469	+	496	78212305	-	Syncc9605_0760	-	proton-translocating NADH-quinone oxidoreductase, chain M
750	 61.05	0	727466..728605	+	379	78212306	-	Syncc9605_0761	-	CO2 hydration protein
751	 59.13	0	728640..728891	+	83	78212307	-	Syncc9605_0762	-	hypothetical protein
752	 61.04	0	728875..729780	+	301	78212308	-	Syncc9605_0763	-	ATPase
753	 64.96	0	729734..730960	-	408	78212309	-	Syncc9605_0764	-	chloride channel
754	 63.75	0	730957..731196	-	79	78212310	-	Syncc9605_0765	-	hypothetical protein
755	 64.60	0	731193..732689	-	498	78212311	-	Syncc9605_0766	-	cobyric acid synthase
756	 64.86	0	732686..733129	-	147	78212312	-	Syncc9605_0767	-	hypothetical protein
757	 59.10	0	733128..733682	+	184	78212313	-	Syncc9605_0768	-	maf protein
758	 55.46	0	733747..734433	-	228	78212314	-	Syncc9605_0769	-	putative integral membrane protein
759	 55.67	0	734897..737152	+	751	78212315	-	Syncc9605_0770	-	hypothetical protein
760	 61.81	0	737205..737780	-	191	78212316	-	Syncc9605_0771	-	hypothetical protein
761	 47.48	-1	738200..738715	+	171	78212317	-	Syncc9605_0772	-	hypothetical protein
762	 57.74	0	739050..739217	+	55	78212318	-	Syncc9605_0773	-	hypothetical protein
763	 57.03	0	739405..739653	+	82	78212319	-	Syncc9605_0774	-	hypothetical protein
764	 50.00	-1	739838..740017	-	59	78212320	-	Syncc9605_0775	-	hypothetical protein
765	 39.77	-2	740581..740844	+	87	78212321	-	Syncc9605_0776	-	hypothetical protein
766	 44.92	-2	740997..741419	+	140	78212322	-	Syncc9605_0777	-	hypothetical protein
767	 47.72	-1	741807..742682	-	291	78212323	-	Syncc9605_0778	-	hypothetical protein
768	 47.27	-1	743211..743906	-	231	78212324	-	Syncc9605_0779	-	ATPase involved in chromosome partitioning-like
769	 54.36	0	744035..744229	-	64	78212325	-	Syncc9605_0780	-	hypothetical protein
770	 58.26	0	744609..744953	+	114	78212326	-	Syncc9605_0781	-	nuclease (SNase-like)
771	 50.18	-1	745424..746266	+	280	78212327	-	Syncc9605_0782	-	hypothetical protein
772	 40.91	-2	747565..747828	+	87	78212328	-	Syncc9605_0783	-	hypothetical protein
773	 54.92	0	749331..750854	-	507	78212329	-	Syncc9605_0785	-	DNA-directed RNA polymerase
774	 51.54	-1	750996..751967	-	323	78212330	-	Syncc9605_0786	-	hypothetical protein
775	 61.74	0	752484..753092	-	202	78212331	rpsD	Syncc9605_0787	-	30S ribosomal protein S4
776	 59.14	0	753169..753447	+	92	78212332	-	Syncc9605_0788	-	hypothetical protein
777	 61.17	0	753447..753719	+	90	78212333	-	Syncc9605_0789	-	ribonucleotide reductase (class II)
778	 64.74	0	753755..755260	+	501	78212334	murE	Syncc9605_0790	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
779	 64.61	0	755294..756460	-	388	78212335	-	Syncc9605_0791	-	putative L-cysteine/cystine lyase
780	 54.50	0	757162..757884	-	240	78212336	-	Syncc9605_0792	-	hypothetical protein
781	 60.99	0	758071..758757	+	228	78212337	-	Syncc9605_0793	-	hypothetical protein
782	 62.96	0	758785..760836	-	683	78212338	-	Syncc9605_0794	-	cellulose synthase (UDP-forming)
783	 61.11	0	760815..760976	-	53	78212339	-	Syncc9605_0795	-	hypothetical protein
784	 60.16	0	761102..761347	-	81	78212340	-	Syncc9605_0796	-	NifU-like protein
785	 64.52	0	761398..762936	+	512	78212341	-	Syncc9605_0797	-	malate:quinone oxidoreductase
786	 61.16	0	762940..763266	-	108	78212342	-	Syncc9605_0798	-	SMR family multidrug efflux transporter
787	 58.54	0	763332..765152	+	606	78212343	-	Syncc9605_0799	-	GTP-binding protein LepA
788	 64.60	0	765394..766266	+	290	78212344	-	Syncc9605_0800	-	putative ABC transporter, oligopeptides
789	 62.96	0	766286..766501	+	71	78212345	-	Syncc9605_0801	-	hypothetical protein
790	 63.77	0	766741..767430	-	229	78212346	-	Syncc9605_0802	-	tRNA (guanosine-2'-O-)-methyltransferase
791	 63.59	0	767471..767893	+	140	78212347	-	Syncc9605_0803	-	methylated-DNA--protein-cysteine methyltransferase
792	 63.68	0	767897..769234	+	445	78212348	-	Syncc9605_0804	-	sun protein
793	 59.96	0	769244..771286	-	680	78212349	-	Syncc9605_0805	-	penicillin-binding protein 1A
794	 60.90	0	771283..772236	-	317	78212350	-	Syncc9605_0806	-	bacteriochlorophyll/chlorophyll a synthase
795	 60.65	0	772248..772463	-	71	78212351	-	Syncc9605_0807	-	hypothetical protein
796	 64.20	0	772520..773290	+	256	78212352	-	Syncc9605_0808	-	imidazole glycerol phosphate synthase subunit HisF
797	 67.52	+1	773287..773988	+	233	78212353	-	Syncc9605_0809	-	demethylmenaquinone methyltransferase
798	 59.83	0	774068..774418	+	116	78212354	-	Syncc9605_0810	-	hypothetical protein
799	 41.59	-2	774489..775142	-	217	78212355	-	Syncc9605_0811	-	hypothetical protein
800	 61.50	0	775570..776460	+	296	78212356	glyQ	Syncc9605_0812	-	glycyl-tRNA synthetase subunit alpha
801	 65.65	0	776587..778362	+	591	78212357	-	Syncc9605_0813	-	ComEC/Rec2-related protein
802	 46.14	-2	779590..780198	-	202	78212358	-	Syncc9605_0814	-	hypothetical protein
803	 48.34	-1	780710..782875	+	721	78212359	-	Syncc9605_0815	-	glycogen debranching protein GlgX
804	 47.78	-1	782927..785086	+	719	78212360	-	Syncc9605_0816	-	hypothetical protein
805	 40.74	-2	785163..786566	+	467	78212361	-	Syncc9605_0817	-	hypothetical protein
806	 42.27	-2	786568..788211	-	547	78212362	-	Syncc9605_0818	-	hypothetical protein
807	 44.29	-2	788453..789319	+	288	78212363	-	Syncc9605_0819	-	hypothetical protein
808	 45.08	-2	789329..791098	+	589	78212364	-	Syncc9605_0820	-	thiamine pyrophosphate-requiring enzyme
809	 41.28	-2	791194..792174	-	326	78212365	-	Syncc9605_0821	-	hypothetical protein
810	 39.83	-2	792293..792754	+	153	78212366	-	Syncc9605_0822	-	hypothetical protein
811	 43.89	-2	792866..793585	+	239	78212367	-	Syncc9605_0823	-	ethyl tert-butyl ether degradation EthD
812	 41.39	-2	793638..795089	+	483	78212368	-	Syncc9605_0824	-	ankyrin
813	 42.51	-2	795134..795580	+	148	78212369	-	Syncc9605_0825	-	hypothetical protein
814	 43.67	-2	795607..797115	+	502	78212370	-	Syncc9605_0826	-	cholesterol oxidase
815	 42.69	-2	797172..797609	+	145	78212371	-	Syncc9605_0827	-	hypothetical protein
816	 46.01	-2	797795..798559	+	254	78212372	-	Syncc9605_0828	-	hypothetical protein
817	 38.01	-2	798556..799431	+	291	78212373	-	Syncc9605_0829	-	hypothetical protein
818	 38.85	-2	799456..800361	+	301	78212374	-	Syncc9605_0830	-	proline-specific peptidase
819	 41.03	-2	800339..801196	+	285	78212375	-	Syncc9605_0831	-	hypothetical protein
820	 40.10	-2	801232..801807	+	191	78212376	-	Syncc9605_0832	-	hypothetical protein
821	 44.22	-2	801951..803585	-	544	78212377	-	Syncc9605_0833	-	porin
822	 46.29	-2	803701..804804	-	367	78212378	-	Syncc9605_0834	-	hypothetical protein
823	 55.19	0	804994..805263	-	89	78212379	-	Syncc9605_0835	-	hypothetical protein
824	 60.00	0	805326..806555	+	409	78212380	-	Syncc9605_0836	-	glycosyltransferase
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.