IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
686	 63.62	0	662084..662509	-	141	78212242	-	Syncc9605_0692	-	photosystem II Psb27 protein
687	 61.00	0	662534..664315	-	593	78212243	-	Syncc9605_0693	-	prolyl-tRNA synthetase
688	 56.56	0	664463..664927	+	154	78212244	-	Syncc9605_0694	-	hypothetical protein
689	 56.86	0	665216..665725	+	169	78212245	-	Syncc9605_0695	-	inorganic diphosphatase
690	 59.65	0	665756..666154	+	132	78212246	-	Syncc9605_0696	-	ferredoxin (2Fe-2S)
691	 57.30	0	666158..666520	+	120	78212247	-	Syncc9605_0697	-	hypothetical protein
692	 60.36	0	666483..667988	-	501	78212248	-	Syncc9605_0698	-	hypothetical protein
693	 59.04	0	668025..668732	+	235	78212249	-	Syncc9605_0699	-	peptidase S26A, signal peptidase I
694	 64.45	0	668722..669987	-	421	78212250	-	Syncc9605_0700	-	dihydroorotase
695	 62.75	0	669992..671320	-	442	78212251	-	Syncc9605_0701	-	putative alpha-ribazole-5'-P phosphatase
696	 65.80	+1	671397..672659	+	420	78212252	-	Syncc9605_0702	-	membrane associated protease
697	 62.58	0	672663..673151	+	162	78212253	-	Syncc9605_0703	-	hypothetical protein
698	 61.52	0	673151..674956	+	601	78212254	-	Syncc9605_0704	-	peptidoglycan glycosyltransferase
699	 56.86	0	675005..676177	+	390	78212255	-	Syncc9605_0705	-	transaldolase/EF-hand domain-containing protein
700	 58.85	0	676192..676575	+	127	78212256	-	Syncc9605_0706	-	cyclic nucleotide-binding domain-containing protein
701	 60.13	0	676639..678030	+	463	78212257	-	Syncc9605_0707	-	hypothetical protein
702	 62.15	0	678084..679565	+	493	78212258	-	Syncc9605_0708	-	deoxyribodipyrimidine photo-lyase type I
703	 63.84	0	679562..680695	-	377	78212259	-	Syncc9605_0709	-	geranylgeranyl reductase
704	 60.29	0	680704..681252	-	182	78212260	frr	Syncc9605_0710	-	ribosome recycling factor
705	 60.92	0	681292..682005	-	237	78212261	pyrH	Syncc9605_0711	-	uridylate kinase
706	 61.54	0	682089..682283	+	64	78212262	-	Syncc9605_0712	-	hypothetical protein
707	 63.21	0	682302..682967	-	221	78212263	-	Syncc9605_0713	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
708	 65.95	+1	682990..683685	-	231	78212264	-	Syncc9605_0714	-	methyltransferase
709	 67.10	+1	683657..684811	-	384	78212265	-	Syncc9605_0715	-	phage integrase family protein
710	 59.78	0	684884..686059	+	391	78212266	hemH	Syncc9605_0716	-	ferrochelatase
711	 62.61	0	686179..687903	+	574	78212267	-	Syncc9605_0717	-	acetolactate synthase 3 catalytic subunit
712	 63.51	0	687900..688247	+	115	78212268	-	Syncc9605_0718	-	hypothetical protein
713	 65.04	0	688231..688476	+	81	78212269	-	Syncc9605_0719	-	hypothetical protein
714	 62.79	0	689723..691399	+	558	78212270	-	Syncc9605_0722	-	hypothetical protein
715	 50.69	-1	691531..692181	-	216	78212271	-	Syncc9605_0723	-	hypothetical protein
716	 65.53	0	692226..693014	-	262	78212272	-	Syncc9605_0724	-	hypothetical protein
717	 65.31	0	693026..693910	-	294	78212273	-	Syncc9605_0725	-	hypothetical protein
718	 62.43	0	693907..695181	-	424	78212274	-	Syncc9605_0726	-	SSU ribosomal protein S1P
719	 63.11	0	695229..696071	+	280	78212275	-	Syncc9605_0727	-	creatininase
720	 56.11	0	696148..696867	+	239	78212276	-	Syncc9605_0728	-	hypothetical protein
721	 59.08	0	696982..698022	+	346	78212277	-	Syncc9605_0729	-	hypothetical protein
722	 59.90	0	698043..699032	+	329	78212278	-	Syncc9605_0730	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
723	 59.32	0	699057..699764	+	235	78212279	-	Syncc9605_0731	-	short chain dehydrogenase
724	 59.60	0	699774..700523	+	249	78212280	-	Syncc9605_0732	-	GTP cyclohydrolase
725	 62.35	0	700535..701206	-	223	78212281	-	Syncc9605_0733	-	phosphoribosylanthranilate isomerase
726	 62.19	0	701269..702519	+	416	78212282	-	Syncc9605_0734	-	hypothetical protein
727	 65.09	0	702477..703175	-	232	78212283	-	Syncc9605_0735	-	protein ligase
728	 65.62	0	703221..703988	+	255	78212284	-	Syncc9605_0736	-	hypothetical protein
729	 64.54	0	703998..704468	-	156	78212285	-	Syncc9605_0737	-	hypothetical protein
730	 58.77	0	704543..704656	+	37	78212286	psaM	Syncc9605_0738	-	photosystem I reaction center subunit XII
731	 58.09	0	704796..705098	+	100	78212287	-	Syncc9605_0739	-	hypothetical protein
732	 62.99	0	705168..706118	+	316	78212288	-	Syncc9605_0740	-	protochlorophyllide oxidoreductase
733	 58.25	0	706181..707071	-	296	78212289	chlL	Syncc9605_0741	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
734	 54.11	0	709534..710943	-	469	78212290	-	Syncc9605_0745	-	amine oxidase (flavin-containing)
735	 64.00	0	711237..712811	-	524	78212291	-	Syncc9605_0746	-	light-independent protochlorophyllide reductase subunit B
736	 65.41	0	712816..714093	-	425	78212292	-	Syncc9605_0747	-	light-independent protochlorophyllide reductase subunit N
737	 61.90	0	714207..714584	-	125	78212293	-	Syncc9605_0748	-	hypothetical protein
738	 62.09	0	714703..715488	+	261	78212294	-	Syncc9605_0749	-	hypothetical protein
739	 61.39	0	715508..716113	-	201	78212295	-	Syncc9605_0750	-	Ham1 protein-like
740	 64.74	0	716443..716754	+	103	78212296	-	Syncc9605_0751	-	carboxysome shell peptide, CsoS1
741	 60.52	0	716826..718241	+	471	78212297	rbcL	Syncc9605_0752	-	ribulose bisophosphate carboxylase
742	 59.65	0	718301..718642	+	113	78212298	-	Syncc9605_0753	-	ribulose 1,5-bisphosphate carboxylase small subunit
743	 65.40	0	718744..721104	+	786	78212299	-	Syncc9605_0754	-	putative carboxysome structural peptide CsoS2
744	 62.08	0	721112..722857	+	581	78212300	-	Syncc9605_0755	-	putative carboxysome shell polypeptide CsoS3
745	 62.82	0	722860..723171	+	103	78212301	-	Syncc9605_0756	-	putative carboxysome peptide A
746	 60.32	0	723171..723422	+	83	78212302	-	Syncc9605_0757	-	putative carboxysome peptide B
747	 66.85	+1	723476..724012	+	178	78212303	-	Syncc9605_0758	-	carbon dioxide concentrating mechanism protein CcmK
748	 61.03	0	724124..725968	+	614	78212304	-	Syncc9605_0759	-	NAD(P)H-quinone oxidoreductase subunit F
749	 62.24	0	725979..727469	+	496	78212305	-	Syncc9605_0760	-	proton-translocating NADH-quinone oxidoreductase, chain M
750	 61.05	0	727466..728605	+	379	78212306	-	Syncc9605_0761	-	CO2 hydration protein
751	 59.13	0	728640..728891	+	83	78212307	-	Syncc9605_0762	-	hypothetical protein
752	 61.04	0	728875..729780	+	301	78212308	-	Syncc9605_0763	-	ATPase
753	 64.96	0	729734..730960	-	408	78212309	-	Syncc9605_0764	-	chloride channel
754	 63.75	0	730957..731196	-	79	78212310	-	Syncc9605_0765	-	hypothetical protein
755	 64.60	0	731193..732689	-	498	78212311	-	Syncc9605_0766	-	cobyric acid synthase
756	 64.86	0	732686..733129	-	147	78212312	-	Syncc9605_0767	-	hypothetical protein
757	 59.10	0	733128..733682	+	184	78212313	-	Syncc9605_0768	-	maf protein
758	 55.46	0	733747..734433	-	228	78212314	-	Syncc9605_0769	-	putative integral membrane protein
759	 55.67	0	734897..737152	+	751	78212315	-	Syncc9605_0770	-	hypothetical protein
760	 61.81	0	737205..737780	-	191	78212316	-	Syncc9605_0771	-	hypothetical protein
761	 47.48	-1	738200..738715	+	171	78212317	-	Syncc9605_0772	-	hypothetical protein
762	 57.74	0	739050..739217	+	55	78212318	-	Syncc9605_0773	-	hypothetical protein
763	 57.03	0	739405..739653	+	82	78212319	-	Syncc9605_0774	-	hypothetical protein
764	 50.00	-1	739838..740017	-	59	78212320	-	Syncc9605_0775	-	hypothetical protein
765	 39.77	-2	740581..740844	+	87	78212321	-	Syncc9605_0776	-	hypothetical protein
766	 44.92	-2	740997..741419	+	140	78212322	-	Syncc9605_0777	-	hypothetical protein
767	 47.72	-1	741807..742682	-	291	78212323	-	Syncc9605_0778	-	hypothetical protein
768	 47.27	-1	743211..743906	-	231	78212324	-	Syncc9605_0779	-	ATPase involved in chromosome partitioning-like
769	 54.36	0	744035..744229	-	64	78212325	-	Syncc9605_0780	-	hypothetical protein
770	 58.26	0	744609..744953	+	114	78212326	-	Syncc9605_0781	-	nuclease (SNase-like)
771	 50.18	-1	745424..746266	+	280	78212327	-	Syncc9605_0782	-	hypothetical protein
772	 40.91	-2	747565..747828	+	87	78212328	-	Syncc9605_0783	-	hypothetical protein
773	 54.92	0	749331..750854	-	507	78212329	-	Syncc9605_0785	-	DNA-directed RNA polymerase
774	 51.54	-1	750996..751967	-	323	78212330	-	Syncc9605_0786	-	hypothetical protein
775	 61.74	0	752484..753092	-	202	78212331	rpsD	Syncc9605_0787	-	30S ribosomal protein S4
776	 59.14	0	753169..753447	+	92	78212332	-	Syncc9605_0788	-	hypothetical protein
777	 61.17	0	753447..753719	+	90	78212333	-	Syncc9605_0789	-	ribonucleotide reductase (class II)
778	 64.74	0	753755..755260	+	501	78212334	murE	Syncc9605_0790	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
779	 64.61	0	755294..756460	-	388	78212335	-	Syncc9605_0791	-	putative L-cysteine/cystine lyase
780	 54.50	0	757162..757884	-	240	78212336	-	Syncc9605_0792	-	hypothetical protein
781	 60.99	0	758071..758757	+	228	78212337	-	Syncc9605_0793	-	hypothetical protein
782	 62.96	0	758785..760836	-	683	78212338	-	Syncc9605_0794	-	cellulose synthase (UDP-forming)
783	 61.11	0	760815..760976	-	53	78212339	-	Syncc9605_0795	-	hypothetical protein
784	 60.16	0	761102..761347	-	81	78212340	-	Syncc9605_0796	-	NifU-like protein
785	 64.52	0	761398..762936	+	512	78212341	-	Syncc9605_0797	-	malate:quinone oxidoreductase
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.