IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
668	 61.97	0	645058..645675	-	205	78212224	-	Syncc9605_0674	-	hypothetical protein
669	 62.25	0	645728..646135	+	135	78212225	-	Syncc9605_0675	-	hypothetical protein
670	 60.70	0	646659..648167	+	502	78212226	-	Syncc9605_0676	-	thermostable carboxypeptidase 1
671	 56.29	0	648230..648817	+	195	78212227	-	Syncc9605_0677	-	inorganic diphosphatase
672	 61.30	0	649043..649582	+	179	78212228	-	Syncc9605_0678	-	hypothetical protein
673	 61.53	0	649583..650536	-	317	78212229	hemC	Syncc9605_0679	-	porphobilinogen deaminase
674	 61.32	0	650674..651141	+	155	78212230	-	Syncc9605_0680	-	hypothetical protein
675	 57.11	0	651331..652638	-	435	78212231	-	Syncc9605_0681	-	RNA polymerase sigma factor RpoD
676	 64.62	0	653009..655258	+	749	78212232	-	Syncc9605_0682	-	replication restart DNA helicase PriA
677	 66.19	+1	655259..656317	-	352	78212233	-	Syncc9605_0683	-	hypothetical protein
678	 64.51	0	656321..657202	-	293	78212234	-	Syncc9605_0684	-	acetylglutamate kinase
679	 61.69	0	657206..657748	-	180	78212235	-	Syncc9605_0685	-	hypothetical protein
680	 59.79	0	657818..658006	+	62	78212236	-	Syncc9605_0686	-	hypothetical protein
681	 64.27	0	658036..658494	-	152	78212237	-	Syncc9605_0687	-	hypothetical protein
682	 64.39	0	658524..659315	+	263	78212238	-	Syncc9605_0688	-	precorrin-6A reductase
683	 62.31	0	659332..659652	+	106	78212239	-	Syncc9605_0689	-	putative divalent cation tolerance protein
684	 61.85	0	659621..660637	-	338	78212240	-	Syncc9605_0690	-	carbohydrate kinase PfkB family
685	 60.38	0	660679..661998	-	439	78212241	-	Syncc9605_0691	-	adenylosuccinate synthetase
686	 63.62	0	662084..662509	-	141	78212242	-	Syncc9605_0692	-	photosystem II Psb27 protein
687	 61.00	0	662534..664315	-	593	78212243	-	Syncc9605_0693	-	prolyl-tRNA synthetase
688	 56.56	0	664463..664927	+	154	78212244	-	Syncc9605_0694	-	hypothetical protein
689	 56.86	0	665216..665725	+	169	78212245	-	Syncc9605_0695	-	inorganic diphosphatase
690	 59.65	0	665756..666154	+	132	78212246	-	Syncc9605_0696	-	ferredoxin (2Fe-2S)
691	 57.30	0	666158..666520	+	120	78212247	-	Syncc9605_0697	-	hypothetical protein
692	 60.36	0	666483..667988	-	501	78212248	-	Syncc9605_0698	-	hypothetical protein
693	 59.04	0	668025..668732	+	235	78212249	-	Syncc9605_0699	-	peptidase S26A, signal peptidase I
694	 64.45	0	668722..669987	-	421	78212250	-	Syncc9605_0700	-	dihydroorotase
695	 62.75	0	669992..671320	-	442	78212251	-	Syncc9605_0701	-	putative alpha-ribazole-5'-P phosphatase
696	 65.80	+1	671397..672659	+	420	78212252	-	Syncc9605_0702	-	membrane associated protease
697	 62.58	0	672663..673151	+	162	78212253	-	Syncc9605_0703	-	hypothetical protein
698	 61.52	0	673151..674956	+	601	78212254	-	Syncc9605_0704	-	peptidoglycan glycosyltransferase
699	 56.86	0	675005..676177	+	390	78212255	-	Syncc9605_0705	-	transaldolase/EF-hand domain-containing protein
700	 58.85	0	676192..676575	+	127	78212256	-	Syncc9605_0706	-	cyclic nucleotide-binding domain-containing protein
701	 60.13	0	676639..678030	+	463	78212257	-	Syncc9605_0707	-	hypothetical protein
702	 62.15	0	678084..679565	+	493	78212258	-	Syncc9605_0708	-	deoxyribodipyrimidine photo-lyase type I
703	 63.84	0	679562..680695	-	377	78212259	-	Syncc9605_0709	-	geranylgeranyl reductase
704	 60.29	0	680704..681252	-	182	78212260	frr	Syncc9605_0710	-	ribosome recycling factor
705	 60.92	0	681292..682005	-	237	78212261	pyrH	Syncc9605_0711	-	uridylate kinase
706	 61.54	0	682089..682283	+	64	78212262	-	Syncc9605_0712	-	hypothetical protein
707	 63.21	0	682302..682967	-	221	78212263	-	Syncc9605_0713	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
708	 65.95	+1	682990..683685	-	231	78212264	-	Syncc9605_0714	-	methyltransferase
709	 67.10	+1	683657..684811	-	384	78212265	-	Syncc9605_0715	-	phage integrase family protein
710	 59.78	0	684884..686059	+	391	78212266	hemH	Syncc9605_0716	-	ferrochelatase
711	 62.61	0	686179..687903	+	574	78212267	-	Syncc9605_0717	-	acetolactate synthase 3 catalytic subunit
712	 63.51	0	687900..688247	+	115	78212268	-	Syncc9605_0718	-	hypothetical protein
713	 65.04	0	688231..688476	+	81	78212269	-	Syncc9605_0719	-	hypothetical protein
714	 62.79	0	689723..691399	+	558	78212270	-	Syncc9605_0722	-	hypothetical protein
715	 50.69	-1	691531..692181	-	216	78212271	-	Syncc9605_0723	-	hypothetical protein
716	 65.53	0	692226..693014	-	262	78212272	-	Syncc9605_0724	-	hypothetical protein
717	 65.31	0	693026..693910	-	294	78212273	-	Syncc9605_0725	-	hypothetical protein
718	 62.43	0	693907..695181	-	424	78212274	-	Syncc9605_0726	-	SSU ribosomal protein S1P
719	 63.11	0	695229..696071	+	280	78212275	-	Syncc9605_0727	-	creatininase
720	 56.11	0	696148..696867	+	239	78212276	-	Syncc9605_0728	-	hypothetical protein
721	 59.08	0	696982..698022	+	346	78212277	-	Syncc9605_0729	-	hypothetical protein
722	 59.90	0	698043..699032	+	329	78212278	-	Syncc9605_0730	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
723	 59.32	0	699057..699764	+	235	78212279	-	Syncc9605_0731	-	short chain dehydrogenase
724	 59.60	0	699774..700523	+	249	78212280	-	Syncc9605_0732	-	GTP cyclohydrolase
725	 62.35	0	700535..701206	-	223	78212281	-	Syncc9605_0733	-	phosphoribosylanthranilate isomerase
726	 62.19	0	701269..702519	+	416	78212282	-	Syncc9605_0734	-	hypothetical protein
727	 65.09	0	702477..703175	-	232	78212283	-	Syncc9605_0735	-	protein ligase
728	 65.62	0	703221..703988	+	255	78212284	-	Syncc9605_0736	-	hypothetical protein
729	 64.54	0	703998..704468	-	156	78212285	-	Syncc9605_0737	-	hypothetical protein
730	 58.77	0	704543..704656	+	37	78212286	psaM	Syncc9605_0738	-	photosystem I reaction center subunit XII
731	 58.09	0	704796..705098	+	100	78212287	-	Syncc9605_0739	-	hypothetical protein
732	 62.99	0	705168..706118	+	316	78212288	-	Syncc9605_0740	-	protochlorophyllide oxidoreductase
733	 58.25	0	706181..707071	-	296	78212289	chlL	Syncc9605_0741	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
734	 54.11	0	709534..710943	-	469	78212290	-	Syncc9605_0745	-	amine oxidase (flavin-containing)
735	 64.00	0	711237..712811	-	524	78212291	-	Syncc9605_0746	-	light-independent protochlorophyllide reductase subunit B
736	 65.41	0	712816..714093	-	425	78212292	-	Syncc9605_0747	-	light-independent protochlorophyllide reductase subunit N
737	 61.90	0	714207..714584	-	125	78212293	-	Syncc9605_0748	-	hypothetical protein
738	 62.09	0	714703..715488	+	261	78212294	-	Syncc9605_0749	-	hypothetical protein
739	 61.39	0	715508..716113	-	201	78212295	-	Syncc9605_0750	-	Ham1 protein-like
740	 64.74	0	716443..716754	+	103	78212296	-	Syncc9605_0751	-	carboxysome shell peptide, CsoS1
741	 60.52	0	716826..718241	+	471	78212297	rbcL	Syncc9605_0752	-	ribulose bisophosphate carboxylase
742	 59.65	0	718301..718642	+	113	78212298	-	Syncc9605_0753	-	ribulose 1,5-bisphosphate carboxylase small subunit
743	 65.40	0	718744..721104	+	786	78212299	-	Syncc9605_0754	-	putative carboxysome structural peptide CsoS2
744	 62.08	0	721112..722857	+	581	78212300	-	Syncc9605_0755	-	putative carboxysome shell polypeptide CsoS3
745	 62.82	0	722860..723171	+	103	78212301	-	Syncc9605_0756	-	putative carboxysome peptide A
746	 60.32	0	723171..723422	+	83	78212302	-	Syncc9605_0757	-	putative carboxysome peptide B
747	 66.85	+1	723476..724012	+	178	78212303	-	Syncc9605_0758	-	carbon dioxide concentrating mechanism protein CcmK
748	 61.03	0	724124..725968	+	614	78212304	-	Syncc9605_0759	-	NAD(P)H-quinone oxidoreductase subunit F
749	 62.24	0	725979..727469	+	496	78212305	-	Syncc9605_0760	-	proton-translocating NADH-quinone oxidoreductase, chain M
750	 61.05	0	727466..728605	+	379	78212306	-	Syncc9605_0761	-	CO2 hydration protein
751	 59.13	0	728640..728891	+	83	78212307	-	Syncc9605_0762	-	hypothetical protein
752	 61.04	0	728875..729780	+	301	78212308	-	Syncc9605_0763	-	ATPase
753	 64.96	0	729734..730960	-	408	78212309	-	Syncc9605_0764	-	chloride channel
754	 63.75	0	730957..731196	-	79	78212310	-	Syncc9605_0765	-	hypothetical protein
755	 64.60	0	731193..732689	-	498	78212311	-	Syncc9605_0766	-	cobyric acid synthase
756	 64.86	0	732686..733129	-	147	78212312	-	Syncc9605_0767	-	hypothetical protein
757	 59.10	0	733128..733682	+	184	78212313	-	Syncc9605_0768	-	maf protein
758	 55.46	0	733747..734433	-	228	78212314	-	Syncc9605_0769	-	putative integral membrane protein
759	 55.67	0	734897..737152	+	751	78212315	-	Syncc9605_0770	-	hypothetical protein
760	 61.81	0	737205..737780	-	191	78212316	-	Syncc9605_0771	-	hypothetical protein
761	 47.48	-1	738200..738715	+	171	78212317	-	Syncc9605_0772	-	hypothetical protein
762	 57.74	0	739050..739217	+	55	78212318	-	Syncc9605_0773	-	hypothetical protein
763	 57.03	0	739405..739653	+	82	78212319	-	Syncc9605_0774	-	hypothetical protein
764	 50.00	-1	739838..740017	-	59	78212320	-	Syncc9605_0775	-	hypothetical protein
765	 39.77	-2	740581..740844	+	87	78212321	-	Syncc9605_0776	-	hypothetical protein
766	 44.92	-2	740997..741419	+	140	78212322	-	Syncc9605_0777	-	hypothetical protein
767	 47.72	-1	741807..742682	-	291	78212323	-	Syncc9605_0778	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.