IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
556	 54.12	0	544647..544901	-	84	78212112	-	Syncc9605_0562	-	hypothetical protein
557	 57.47	0	545219..545794	+	191	78212113	-	Syncc9605_0563	-	phage integrase family protein
558	 54.12	0	546860..549568	-	902	78212114	-	Syncc9605_0564	-	ATPase-like
559	 58.80	0	550043..551287	-	414	78212115	-	Syncc9605_0565	-	hypothetical protein
560	 60.28	0	551601..552320	+	239	78212116	-	Syncc9605_0566	-	hypothetical protein
561	 59.07	0	552354..552590	-	78	78212117	-	Syncc9605_0567	-	hypothetical protein
562	 63.87	0	552610..553467	-	285	78212118	-	Syncc9605_0568	-	hypothetical protein
563	 63.51	0	553494..554411	+	305	78212119	-	Syncc9605_0569	-	CysQ protein-like
564	 63.07	0	554419..556584	-	721	78212120	-	Syncc9605_0570	-	polynucleotide phosphorylase/polyadenylase
565	 61.39	0	556691..556993	-	100	78212121	rpsN	Syncc9605_0571	-	30S ribosomal protein S14
566	 62.60	0	557051..558133	-	360	78212122	-	Syncc9605_0572	-	peptidase M50, putative membrane-associated zinc metallopeptidase
567	 63.38	0	558158..559435	-	425	78212123	-	Syncc9605_0573	-	seryl-tRNA synthetase
568	 63.58	0	559478..559639	-	53	78212124	-	Syncc9605_0574	-	hypothetical protein
569	 64.65	0	559718..561208	-	496	78212125	-	Syncc9605_0575	-	ATPase
570	 63.50	0	561205..561741	-	178	78212126	-	Syncc9605_0576	-	hypothetical protein
571	 58.27	0	561738..562868	-	376	78212127	-	Syncc9605_0577	-	putative inner membrane protein translocase component YidC
572	 61.76	0	562925..563332	-	135	78212128	-	Syncc9605_0578	-	hypothetical protein
573	 59.43	0	563329..563715	-	128	78212129	-	Syncc9605_0579	-	ribonuclease P protein component of ribozyme
574	 69.57	+1	563777..563914	-	45	78212130	rpmH	Syncc9605_0580	-	50S ribosomal protein L34
575	 58.85	0	563961..564536	-	191	78212131	-	Syncc9605_0581	-	hypothetical protein
576	 64.32	0	564612..564995	-	127	78212132	-	Syncc9605_0582	-	chorismate mutase
577	 61.19	0	564992..565813	-	273	78212133	-	Syncc9605_0583	-	signal peptide peptidase A
578	 61.78	0	565858..566799	+	313	78212134	-	Syncc9605_0584	-	SMR family transporter PecM
579	 62.52	0	566796..567905	+	369	78212135	-	Syncc9605_0585	-	putative UDP-glucose:tetrahydrobiopterin glucosyltransferase
580	 63.57	0	567880..569721	+	613	78212136	-	Syncc9605_0586	-	hypothetical protein
581	 61.69	0	569725..570246	-	173	78212137	-	Syncc9605_0587	-	hypothetical protein
582	 61.24	0	570311..571084	+	257	78212138	-	Syncc9605_0588	-	membrane-associated 30 kD protein-like
583	 57.44	0	571132..571467	+	111	78212139	-	Syncc9605_0589	-	thioredoxin
584	 61.38	0	571454..572644	+	396	78212140	-	Syncc9605_0590	-	aminotransferase
585	 65.03	0	572628..573419	+	263	78212141	-	Syncc9605_0591	-	biotin--acetyl-CoA-carboxylase ligase
586	 64.66	0	573493..574341	+	282	78212142	-	Syncc9605_0592	-	M23/M37 familypeptidase
587	 58.59	0	574372..574965	-	197	78212143	-	Syncc9605_0593	-	two component transcriptional regulator
588	 59.43	0	575018..575404	-	128	78212144	-	Syncc9605_0594	-	response regulator receiver domain-containing protein
589	 60.99	0	575424..576110	-	228	78212145	-	Syncc9605_0595	-	ATPase
590	 59.62	0	576115..577746	-	543	78212146	-	Syncc9605_0596	-	NAD(P)H-quinone oxidoreductase subunit 2
591	 62.19	0	577798..580497	+	899	78212147	-	Syncc9605_0597	-	DNA topoisomerase I
592	 65.50	0	580497..580925	+	142	78212148	-	Syncc9605_0598	-	hypothetical protein
593	 63.30	0	580922..581575	+	217	78212149	-	Syncc9605_0599	-	hypothetical protein
594	 64.75	0	581547..582746	+	399	78212150	-	Syncc9605_0600	-	hypothetical protein
595	 65.98	+1	582743..583756	+	337	78212151	-	Syncc9605_0601	-	twin-arginine translocation pathway signal
596	 64.17	0	583730..584851	-	373	78212152	-	Syncc9605_0602	-	oxidoreductase
597	 62.66	0	584848..585396	-	182	78212153	-	Syncc9605_0603	-	hypothetical protein
598	 64.42	0	585446..586114	+	222	78212154	-	Syncc9605_0604	-	riboflavin synthase subunit alpha
599	 62.37	0	586099..586470	-	123	78212155	-	Syncc9605_0605	-	transcriptional regulator AbrB
600	 59.74	0	586525..587130	-	201	78212156	-	Syncc9605_0606	-	cytochrome c oxidase subunit III
601	 56.95	0	587127..588794	-	555	78212157	-	Syncc9605_0607	-	cytochrome-c oxidase
602	 54.75	0	588796..589626	-	276	78212158	-	Syncc9605_0608	-	cytochrome c oxidase subunit II
603	 64.51	0	589828..590754	+	308	78212159	-	Syncc9605_0609	-	putative cytochrome c oxidase assembly protein
604	 63.31	0	590747..591730	+	327	78212160	-	Syncc9605_0610	-	protoheme IX farnesyltransferase
605	 61.05	0	591781..592794	+	337	78212161	-	Syncc9605_0611	-	ATPase
606	 59.42	0	592804..593658	+	284	78212162	-	Syncc9605_0612	-	putative multidrug efflux ABC transporter
607	 57.38	0	593663..594211	+	182	78212163	-	Syncc9605_0613	-	hypothetical protein
608	 62.17	0	594217..594906	+	229	78212164	-	Syncc9605_0614	-	N-acetylmannosamine-6-phosphate 2-epimerase
609	 61.96	0	594907..596586	-	559	78212165	groEL	Syncc9605_0615	-	chaperonin GroEL
610	 61.58	0	596718..596894	+	58	78212166	-	Syncc9605_0616	-	hypothetical protein
611	 63.02	0	596904..597698	-	264	78212167	-	Syncc9605_0617	-	3-oxoacyl-[acyl-carrier-protein] reductase
612	 61.08	0	597704..598759	-	351	78212168	-	Syncc9605_0618	-	VIC family potassium channel protein
613	 65.11	0	598771..599604	-	277	78212169	-	Syncc9605_0619	-	hypothetical protein
614	 64.02	0	599716..600357	+	213	78212170	ispD	Syncc9605_0620	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
615	 65.54	0	600341..601225	-	294	78212171	-	Syncc9605_0621	-	hypothetical protein
616	 63.89	0	601225..602124	-	299	78212172	ubiA	Syncc9605_0622	-	prenyltransferase
617	 60.87	0	602206..603843	+	545	78212173	-	Syncc9605_0623	-	exopolyphosphatase
618	 60.93	0	603827..604645	-	272	78212174	-	Syncc9605_0624	-	XRE family transcriptional regulator
619	 61.02	0	604845..605606	-	253	78212175	-	Syncc9605_0625	-	precorrin-4 C11-methyltransferase
620	 59.27	0	605603..606481	-	292	78212176	-	Syncc9605_0626	-	prolipoprotein diacylglyceryl transferase
621	 59.23	0	606487..607467	-	326	78212177	-	Syncc9605_0627	-	apocytochrome f
622	 61.64	0	607458..607994	-	178	78212178	-	Syncc9605_0628	-	cytochrome b6-f complex iron-sulfur subunit
623	 58.51	0	608042..608458	+	138	78212179	-	Syncc9605_0629	-	hypothetical protein
624	 63.93	0	608439..609242	-	267	78212180	-	Syncc9605_0630	-	Sec-independent protein translocase TatC
625	 64.64	0	609269..610948	-	559	78212181	-	Syncc9605_0631	-	secreted protein MPB70 precursor-like
626	 61.83	0	611035..611592	+	185	78212182	-	Syncc9605_0632	-	guanylate kinase
627	 55.56	0	611708..611824	-	38	78212183	-	Syncc9605_0633	-	photosystem I reaction center subunit IX
628	 60.17	0	611857..612333	-	158	78212184	-	Syncc9605_0634	-	photosystem I reaction center subunit III (PsaF)
629	 63.22	0	612411..613484	+	357	78212185	-	Syncc9605_0635	-	O-sialoglycoprotein endopeptidase
630	 59.80	0	613500..613703	+	67	78212186	-	Syncc9605_0636	-	high light inducible protein
631	 62.31	0	613704..614942	-	412	78212187	-	Syncc9605_0637	-	twitching motility protein
632	 61.90	0	614993..616105	+	370	78212188	-	Syncc9605_0638	-	UDP-N-acetylglucosamine 2-epimerase
633	 64.01	0	616074..616676	+	200	78212189	-	Syncc9605_0639	-	hypothetical protein
634	 63.43	0	616911..618176	+	421	78212190	-	Syncc9605_0640	-	CPA1 family Na+/H+ antiporter
635	 61.23	0	618120..619553	-	477	78212191	gltX	Syncc9605_0641	-	glutamyl-tRNA synthetase
636	 58.56	0	619863..620084	-	73	78212192	-	Syncc9605_0642	-	hypothetical protein
637	 59.96	0	620222..620698	-	158	78212193	rplS	Syncc9605_0643	-	50S ribosomal protein L19
638	 56.25	0	620724..621011	-	95	78212194	-	Syncc9605_0644	-	hypothetical protein
639	 59.57	0	621065..621910	+	281	78212195	-	Syncc9605_0645	-	methionine aminopeptidase
640	 62.60	0	621891..622628	-	245	78212196	-	Syncc9605_0646	-	short chain dehydrogenase
641	 60.16	0	622665..623033	+	122	78212197	-	Syncc9605_0647	-	hypothetical protein
642	 59.86	0	623042..624157	+	371	78212198	-	Syncc9605_0648	-	hypothetical protein
643	 56.61	0	624174..624710	+	178	78212199	-	Syncc9605_0649	-	hypothetical protein
644	 52.44	-1	624851..626797	-	648	78212200	-	Syncc9605_0650	-	dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like
645	 64.41	0	626950..627348	-	132	78212201	-	Syncc9605_0651	-	hypothetical protein
646	 56.02	0	627458..627955	+	165	78212202	-	Syncc9605_0652	-	nucleotide-binding protein
647	 50.10	-1	628107..629096	+	329	78212203	-	Syncc9605_0653	-	hypothetical protein
648	 59.61	0	629120..629374	-	84	78212204	-	Syncc9605_0654	-	hypothetical protein
649	 60.34	0	629392..629802	+	136	78212205	-	Syncc9605_0655	-	phosphoribosyltransferase family protein
650	 57.11	0	629802..630272	+	156	78212206	-	Syncc9605_0656	-	hypothetical protein
651	 59.17	0	630390..630776	-	128	78212207	-	Syncc9605_0657	-	cytidine deaminase
652	 57.10	0	630739..631083	-	114	78212208	-	Syncc9605_0658	-	hypothetical protein
653	 63.17	0	631179..632465	-	428	78212209	-	Syncc9605_0659	-	glutamate-1-semialdehyde aminotransferase
654	 62.74	0	632617..634068	+	483	78212210	-	Syncc9605_0660	-	putative glycolate oxidase subunit GlcD
655	 60.90	0	634075..634941	-	288	78212211	-	Syncc9605_0661	-	exodeoxyribonuclease III
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.