IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
460	 62.02	0	456285..457058	-	257	78212017	-	Syncc9605_0467	-	HAD family hydrolase
461	 60.03	0	457064..458224	-	386	78212018	-	Syncc9605_0468	-	30S ribosomal protein S1
462	 56.16	0	458312..458806	-	164	78212019	-	Syncc9605_0469	-	transcriptional regulator NrdR
463	 53.12	0	459008..459103	-	31	109150032	psbT	Syncc9605_0469a	-	photosystem II reaction center protein T
464	 59.68	0	459125..460684	-	519	78212020	-	Syncc9605_0470	-	photosystem II chlorophyll-binding protein CP47
465	 63.94	0	460867..461343	+	158	78212021	-	Syncc9605_0471	-	ferredoxin (2Fe-2S)
466	 54.29	0	461403..461507	+	34	78212022	-	Syncc9605_0472	-	photosystem II reaction center M protein
467	 59.25	0	461509..462357	-	282	78212023	-	Syncc9605_0473	-	hypothetical protein
468	 62.47	0	462440..462844	+	134	78212024	-	Syncc9605_0474	-	hypothetical protein
469	 62.54	0	462955..463971	+	338	78212025	-	Syncc9605_0475	-	Smf family DNA processing protein
470	 62.80	0	463950..464855	+	301	78212026	-	Syncc9605_0476	-	HemK family modification methylase
471	 65.17	0	464884..465483	+	199	78212027	-	Syncc9605_0477	-	hypothetical protein
472	 54.60	0	465480..465653	+	57	78212028	-	Syncc9605_0478	-	hypothetical protein
473	 58.71	0	465725..465925	-	66	78212029	-	Syncc9605_0479	-	LuxR family transcriptional regulator
474	 60.52	0	465976..466284	-	102	78212030	-	Syncc9605_0480	-	cell division topological specificity factor MinE
475	 61.25	0	466289..467101	-	270	78212031	-	Syncc9605_0481	-	septum site-determining protein MinD
476	 61.03	0	467157..467795	-	212	78212032	-	Syncc9605_0482	-	septum site-determining protein MinC
477	 61.93	0	467803..469068	-	421	78212033	-	Syncc9605_0483	-	metal dependent phosphohydrolase
478	 60.76	0	469065..470249	-	394	78212034	-	Syncc9605_0484	-	carboxyl-terminal protease
479	 56.16	0	470410..471066	+	218	78212035	-	Syncc9605_0485	-	cytochrome b6
480	 55.69	0	471106..471588	+	160	78212036	-	Syncc9605_0486	-	cytochrome b6-f complex subunit IV
481	 58.02	0	471664..473121	-	485	78212037	-	Syncc9605_0487	-	putative neutral invertase-like protein
482	 54.46	0	473134..473469	-	111	78212038	-	Syncc9605_0488	-	hypothetical protein
483	 47.01	-1	479259..480011	-	250	78212039	-	Syncc9605_0489	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
484	 55.95	0	480008..480595	-	195	78212040	-	Syncc9605_0490	-	methylthioribulose-1-phosphate dehydratase
485	 62.33	0	480676..481689	+	337	78212041	-	Syncc9605_0491	-	translation initiation factor 2B subunit I
486	 59.50	0	481680..482516	-	278	78212042	-	Syncc9605_0492	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
487	 59.05	0	482522..482731	-	69	78212043	-	Syncc9605_0493	-	photosystem I reaction center subunit IV
488	 63.13	0	482773..483876	+	367	78212044	-	Syncc9605_0494	-	hypothetical protein
489	 66.67	+1	483994..485406	+	470	78212045	-	Syncc9605_0495	-	ATP-dependent DNA helicase RecQ
490	 62.03	0	485413..486426	-	337	78212046	-	Syncc9605_0496	-	peptidoglycan-binding LysM
491	 63.99	0	486526..487905	-	459	78212047	-	Syncc9605_0497	-	putative aldehyde dehydrogenase
492	 63.18	0	487960..489621	+	553	78212048	-	Syncc9605_0498	-	alpha amylase domain-containing protein
493	 66.60	+1	489564..491141	-	525	78212049	-	Syncc9605_0499	-	glycerol-3-phosphate oxidase
494	 66.80	+1	491134..492639	-	501	78212050	-	Syncc9605_0500	-	putative glycerol kinase
495	 62.96	0	492691..494121	+	476	78212051	-	Syncc9605_0501	-	alpha amylase domain-containing protein
496	 61.45	0	494401..494841	+	146	78212052	-	Syncc9605_0502	-	3-dehydroquinate dehydratase
497	 62.03	0	494838..495527	+	229	78212053	-	Syncc9605_0503	-	tRNA-(MS(2)IO(6)A)-hydroxylase-like
498	 63.09	0	495515..497191	-	558	78212054	-	Syncc9605_0504	-	putative sulfate transporter
499	 62.96	0	497198..497602	-	134	78212055	-	Syncc9605_0505	-	hypothetical protein
500	 61.53	0	497713..498705	+	330	78212056	-	Syncc9605_0506	-	heat shock protein DnaJ-like
501	 60.58	0	498745..499746	+	333	78212057	-	Syncc9605_0507	-	delta-aminolevulinic acid dehydratase
502	 59.90	0	499751..500149	+	132	78212058	-	Syncc9605_0508	-	ring-cleaving dioxygenase
503	 65.04	0	500151..502550	+	799	78212059	-	Syncc9605_0509	-	MutS2 family protein
504	 57.34	0	502573..503751	-	392	78212060	-	Syncc9605_0510	-	ATPase
505	 61.31	0	503810..504799	+	329	78212061	obgE	Syncc9605_0511	-	GTPase ObgE
506	 56.28	0	504893..505075	+	60	78212062	-	Syncc9605_0512	-	hypothetical protein
507	 56.62	0	505106..505324	-	72	78212063	-	Syncc9605_0513	-	hypothetical protein
508	 60.88	0	505463..507364	-	633	78212064	-	Syncc9605_0514	-	ATPase
509	 62.91	0	507361..507999	-	212	78212065	-	Syncc9605_0515	-	hypothetical protein
510	 65.74	+1	507996..508970	-	324	78212066	-	Syncc9605_0516	-	putative glutathione S-transferase
511	 61.86	0	509041..509955	+	304	78212067	-	Syncc9605_0517	-	aspartoacylase
512	 59.33	0	509952..510278	-	108	78212068	-	Syncc9605_0518	-	hypothetical protein
513	 59.72	0	510640..511719	+	359	78212069	-	Syncc9605_0519	-	photosystem q(b) protein
514	 56.95	0	512008..513654	+	548	78212070	-	Syncc9605_0520	-	acetolactate synthase
515	 45.83	-2	513856..514239	-	127	78212071	-	Syncc9605_0521	-	carboxymuconolactone decarboxylase family protein
516	 46.77	-2	514684..514869	-	61	78212072	-	Syncc9605_0522	-	hypothetical protein
517	 56.70	0	514936..515928	-	330	78212073	-	Syncc9605_0523	-	hypothetical protein
518	 57.86	0	515909..516703	-	264	78212074	-	Syncc9605_0524	-	SPFH domain-containing protein/band 7 family protein
519	 53.76	0	516807..517085	-	92	78212075	-	Syncc9605_0525	-	hypothetical protein
520	 59.18	0	517644..517937	+	97	78212076	-	Syncc9605_0526	-	hypothetical protein
521	 57.58	0	517944..518240	-	98	78212077	-	Syncc9605_0527	-	hypothetical protein
522	 56.98	0	518321..518836	+	171	78212078	-	Syncc9605_0528	-	hypothetical protein
523	 50.44	-1	519337..519564	+	75	78212079	-	Syncc9605_0529	-	hypothetical protein
524	 55.21	0	519660..519851	+	63	78212080	-	Syncc9605_0530	-	hypothetical protein
525	 53.46	0	519891..520208	+	105	78212081	-	Syncc9605_0531	-	hypothetical protein
526	 56.72	0	520343..520744	+	133	78212082	-	Syncc9605_0532	-	hypothetical protein
527	 58.80	0	520776..520991	-	71	78212083	-	Syncc9605_0533	-	hypothetical protein
528	 59.45	0	521393..521683	+	96	78212084	-	Syncc9605_0534	-	hypothetical protein
529	 57.14	0	522048..522278	+	76	78212085	-	Syncc9605_0535	-	hypothetical protein
530	 60.22	0	522278..522463	+	61	78212086	-	Syncc9605_0536	-	hypothetical protein
531	 54.73	0	523595..523795	+	66	78212087	-	Syncc9605_0537	-	hypothetical protein
532	 58.90	0	525654..525872	-	72	78212088	-	Syncc9605_0538	-	hypothetical protein
533	 55.46	0	526279..526635	+	118	78212089	-	Syncc9605_0539	-	hypothetical protein
534	 55.21	0	526696..527079	+	127	78212090	-	Syncc9605_0540	-	hypothetical protein
535	 52.78	-1	527232..527771	+	179	78212091	-	Syncc9605_0541	-	hypothetical protein
536	 64.87	0	527869..528369	-	166	78212092	-	Syncc9605_0542	-	hypothetical protein
537	 64.65	0	528315..529007	-	230	78212093	-	Syncc9605_0543	-	hypothetical protein
538	 61.51	0	529106..529357	-	83	78212094	-	Syncc9605_0544	-	hypothetical protein
539	 41.75	-2	529410..529718	+	102	78212095	-	Syncc9605_0545	-	hypothetical protein
540	 44.79	-2	529824..530111	-	95	78212096	-	Syncc9605_0546	-	hypothetical protein
541	 50.18	-1	530355..530633	-	92	78212097	-	Syncc9605_0547	-	hypothetical protein
542	 52.25	-1	531643..531975	-	110	78212098	-	Syncc9605_0548	-	hypothetical protein
543	 53.08	-1	532040..532429	+	129	78212099	-	Syncc9605_0549	-	hypothetical protein
544	 58.12	0	532958..533530	-	190	78212100	-	Syncc9605_0550	-	hypothetical protein
545	 53.38	0	533693..534091	+	132	78212101	-	Syncc9605_0551	-	hypothetical protein
546	 56.73	0	534160..534330	+	56	78212102	-	Syncc9605_0552	-	hypothetical protein
547	 58.88	0	535525..536205	+	226	78212103	-	Syncc9605_0553	-	maleylacetoacetate isomerase
548	 55.72	0	536223..537812	-	529	78212104	-	Syncc9605_0554	-	hypothetical protein
549	 40.39	-2	538656..539633	+	325	78212105	-	Syncc9605_0555	-	hypothetical protein
550	 52.71	-1	539755..540105	-	116	78212106	-	Syncc9605_0556	-	hypothetical protein
551	 60.70	0	540400..541053	-	217	78212107	-	Syncc9605_0557	-	hypothetical protein
552	 53.93	0	541216..542016	+	266	78212108	-	Syncc9605_0558	-	hypothetical protein
553	 41.50	-2	542873..543166	+	97	78212109	-	Syncc9605_0559	-	hypothetical protein
554	 44.76	-2	543406..544149	+	247	78212110	-	Syncc9605_0560	-	hypothetical protein
555	 55.00	0	544231..544650	-	139	78212111	-	Syncc9605_0561	-	hypothetical protein
556	 54.12	0	544647..544901	-	84	78212112	-	Syncc9605_0562	-	hypothetical protein
557	 57.47	0	545219..545794	+	191	78212113	-	Syncc9605_0563	-	phage integrase family protein
558	 54.12	0	546860..549568	-	902	78212114	-	Syncc9605_0564	-	ATPase-like
559	 58.80	0	550043..551287	-	414	78212115	-	Syncc9605_0565	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.