IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
401	 59.64	0	407964..408347	-	127	78211958	-	Syncc9605_0406	-	PadR family transcriptional regulator
402	 61.55	0	408463..409107	+	214	78211959	-	Syncc9605_0407	-	3'-5' exonuclease
403	 61.63	0	409117..409374	-	85	78211960	-	Syncc9605_0408	-	hypothetical protein
404	 64.98	0	409394..410581	-	395	78211961	-	Syncc9605_0409	-	hypothetical protein
405	 62.05	0	410751..411248	-	165	78211962	-	Syncc9605_0410	-	hypothetical protein
406	 60.38	0	411224..411382	-	52	78211963	-	Syncc9605_0411	-	hypothetical protein
407	 63.22	0	411411..412397	+	328	78211964	-	Syncc9605_0412	-	hypothetical protein
408	 60.82	0	412407..413039	-	210	78211965	-	Syncc9605_0413	-	hypothetical protein
409	 62.51	0	413159..414265	-	368	78211966	-	Syncc9605_0414	-	phosphoribosylaminoimidazole synthetase
410	 60.37	0	414517..415056	+	179	78211967	-	Syncc9605_0415	-	rare lipoprotein A
411	 62.51	0	415128..416570	+	480	78211968	-	Syncc9605_0416	-	bifunctional pantoate ligase/cytidylate kinase
412	 61.43	0	416554..417030	-	158	78211969	-	Syncc9605_0417	-	protein tyrosine phosphatase
413	 43.68	-2	417023..418501	-	492	78211970	-	Syncc9605_0418	-	HEAT repeat-containing PBS lyase
414	 43.86	-2	418543..419169	-	208	78211971	-	Syncc9605_0419	-	hypothetical protein
415	 58.28	0	419201..419689	-	162	78211972	-	Syncc9605_0420	-	phycocyanin, alpha subunit
416	 58.57	0	419727..420245	-	172	78211973	-	Syncc9605_0421	-	phycocyanin, beta subunit
417	 59.44	0	420382..421197	-	271	78211974	-	Syncc9605_0422	-	phycoerythrobilin:ferredoxin oxidoreductase
418	 49.15	-1	421194..421901	-	235	78211975	-	Syncc9605_0423	-	dihydrobiliverdin:ferredoxin oxidoreductase
419	 47.55	-1	421907..422518	-	203	78211976	-	Syncc9605_0424	-	hypothetical protein
420	 47.17	-1	422581..422898	-	105	78211977	-	Syncc9605_0425	-	hypothetical protein
421	 56.76	0	423124..423678	+	184	78211978	-	Syncc9605_0426	-	C-phycoerythrin class I beta chain
422	 56.57	0	423740..424234	+	164	78211979	-	Syncc9605_0427	-	C-phycoerythrin class I alpha chain
423	 44.37	-2	424369..424803	+	144	78211980	-	Syncc9605_0428	-	hypothetical protein
424	 41.93	-2	425302..426627	+	441	78211981	-	Syncc9605_0429	-	putative bilin biosynthesis protein (CpeY)
425	 44.76	-2	426701..427339	+	212	78211982	-	Syncc9605_0430	-	putative bilin biosynthesis protein cpeZ
426	 46.38	-2	427349..427693	-	114	78211983	-	Syncc9605_0431	-	hypothetical protein
427	 46.78	-2	427804..428703	-	299	78211984	-	Syncc9605_0432	-	HEAT repeat-containing PBS lyase
428	 50.63	-1	428840..429706	-	288	78211985	-	Syncc9605_0433	-	C-phycoerythrin class II gamma chain, linker polypeptide
429	 61.65	0	430045..430542	-	165	78211986	-	Syncc9605_0434	-	C-phycoerythrin class II alpha chain
430	 61.51	0	430589..431170	-	193	78211987	-	Syncc9605_0435	-	C-phycoerythrin class II beta chain
431	 48.79	-1	431307..432503	-	398	78211988	-	Syncc9605_0436	-	HEAT repeat-containing PBS lyase
432	 44.86	-2	432753..433073	+	106	78211989	-	Syncc9605_0437	-	hypothetical protein
433	 46.86	-1	433055..433357	+	100	78211990	-	Syncc9605_0438	-	hypothetical protein
434	 39.54	-2	433661..433966	-	101	78211991	-	Syncc9605_0439	-	CpeR-like, phycoerythrin linker-proteins region
435	 44.55	-2	433968..434582	-	204	78211992	-	Syncc9605_0440	-	CpeT-like
436	 43.84	-2	434592..435086	-	164	78211993	-	Syncc9605_0441	-	hypothetical protein
437	 51.29	-1	435423..436157	-	244	78211994	-	Syncc9605_0442	-	phycobilisome linker polypeptide
438	 56.06	0	436233..437882	-	549	78211995	-	Syncc9605_0443	-	phycobilisome linker polypeptide
439	 57.85	0	437938..438822	-	294	78211996	-	Syncc9605_0444	-	phycobilisome linker polypeptide
440	 59.86	0	438995..439714	-	239	78211997	-	Syncc9605_0445	-	hypothetical protein
441	 61.79	0	439716..440474	-	252	78211998	-	Syncc9605_0446	-	phycobilisome rod-core linker polypeptide (L-RC 28.5)
442	 58.16	0	440546..441121	-	191	78211999	-	Syncc9605_0447	-	phycobilisome polypeptide
443	 59.86	0	441118..441543	-	141	78212000	-	Syncc9605_0448	-	hypothetical protein
444	 61.04	0	441653..442309	-	218	78212001	-	Syncc9605_0449	-	hypothetical protein
445	 61.14	0	442351..442857	+	168	78212002	-	Syncc9605_0450	-	hypothetical protein
446	 58.33	0	442858..443097	-	79	78212003	-	Syncc9605_0451	-	hypothetical protein
447	 53.95	0	444590..445108	+	172	78212004	-	Syncc9605_0452	-	hypothetical protein
448	 64.08	0	445101..446183	+	360	78212005	-	Syncc9605_0453	-	hypothetical protein
449	 64.16	0	446208..446645	+	145	78212006	-	Syncc9605_0454	-	hypothetical protein
450	 65.53	0	446726..447163	+	145	78212007	-	Syncc9605_0455	-	hypothetical protein
451	 66.02	+1	447402..448646	+	414	78212008	-	Syncc9605_0456	-	hypothetical protein
452	 65.33	0	448643..448867	+	74	78212009	-	Syncc9605_0457	-	hypothetical protein
453	 48.11	-1	448966..449283	-	105	78212010	-	Syncc9605_0458	-	hypothetical protein
454	 54.97	0	450236..450577	+	113	78212011	-	Syncc9605_0459	-	hypothetical protein
455	 62.04	0	450579..451010	-	143	78212012	-	Syncc9605_0460	-	hypothetical protein
456	 62.98	0	452622..453272	-	216	78212013	-	Syncc9605_0463	-	hypothetical protein
457	 61.23	0	453327..453602	-	91	78212014	-	Syncc9605_0464	-	hypothetical protein
458	 64.81	0	453783..455021	-	412	78212015	-	Syncc9605_0465	-	carbohydrate kinase
459	 63.83	0	455026..456261	-	411	78212016	-	Syncc9605_0466	-	S-adenosylmethionine synthetase
460	 62.02	0	456285..457058	-	257	78212017	-	Syncc9605_0467	-	HAD family hydrolase
461	 60.03	0	457064..458224	-	386	78212018	-	Syncc9605_0468	-	30S ribosomal protein S1
462	 56.16	0	458312..458806	-	164	78212019	-	Syncc9605_0469	-	transcriptional regulator NrdR
463	 53.12	0	459008..459103	-	31	109150032	psbT	Syncc9605_0469a	-	photosystem II reaction center protein T
464	 59.68	0	459125..460684	-	519	78212020	-	Syncc9605_0470	-	photosystem II chlorophyll-binding protein CP47
465	 63.94	0	460867..461343	+	158	78212021	-	Syncc9605_0471	-	ferredoxin (2Fe-2S)
466	 54.29	0	461403..461507	+	34	78212022	-	Syncc9605_0472	-	photosystem II reaction center M protein
467	 59.25	0	461509..462357	-	282	78212023	-	Syncc9605_0473	-	hypothetical protein
468	 62.47	0	462440..462844	+	134	78212024	-	Syncc9605_0474	-	hypothetical protein
469	 62.54	0	462955..463971	+	338	78212025	-	Syncc9605_0475	-	Smf family DNA processing protein
470	 62.80	0	463950..464855	+	301	78212026	-	Syncc9605_0476	-	HemK family modification methylase
471	 65.17	0	464884..465483	+	199	78212027	-	Syncc9605_0477	-	hypothetical protein
472	 54.60	0	465480..465653	+	57	78212028	-	Syncc9605_0478	-	hypothetical protein
473	 58.71	0	465725..465925	-	66	78212029	-	Syncc9605_0479	-	LuxR family transcriptional regulator
474	 60.52	0	465976..466284	-	102	78212030	-	Syncc9605_0480	-	cell division topological specificity factor MinE
475	 61.25	0	466289..467101	-	270	78212031	-	Syncc9605_0481	-	septum site-determining protein MinD
476	 61.03	0	467157..467795	-	212	78212032	-	Syncc9605_0482	-	septum site-determining protein MinC
477	 61.93	0	467803..469068	-	421	78212033	-	Syncc9605_0483	-	metal dependent phosphohydrolase
478	 60.76	0	469065..470249	-	394	78212034	-	Syncc9605_0484	-	carboxyl-terminal protease
479	 56.16	0	470410..471066	+	218	78212035	-	Syncc9605_0485	-	cytochrome b6
480	 55.69	0	471106..471588	+	160	78212036	-	Syncc9605_0486	-	cytochrome b6-f complex subunit IV
481	 58.02	0	471664..473121	-	485	78212037	-	Syncc9605_0487	-	putative neutral invertase-like protein
482	 54.46	0	473134..473469	-	111	78212038	-	Syncc9605_0488	-	hypothetical protein
483	 47.01	-1	479259..480011	-	250	78212039	-	Syncc9605_0489	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
484	 55.95	0	480008..480595	-	195	78212040	-	Syncc9605_0490	-	methylthioribulose-1-phosphate dehydratase
485	 62.33	0	480676..481689	+	337	78212041	-	Syncc9605_0491	-	translation initiation factor 2B subunit I
486	 59.50	0	481680..482516	-	278	78212042	-	Syncc9605_0492	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
487	 59.05	0	482522..482731	-	69	78212043	-	Syncc9605_0493	-	photosystem I reaction center subunit IV
488	 63.13	0	482773..483876	+	367	78212044	-	Syncc9605_0494	-	hypothetical protein
489	 66.67	+1	483994..485406	+	470	78212045	-	Syncc9605_0495	-	ATP-dependent DNA helicase RecQ
490	 62.03	0	485413..486426	-	337	78212046	-	Syncc9605_0496	-	peptidoglycan-binding LysM
491	 63.99	0	486526..487905	-	459	78212047	-	Syncc9605_0497	-	putative aldehyde dehydrogenase
492	 63.18	0	487960..489621	+	553	78212048	-	Syncc9605_0498	-	alpha amylase domain-containing protein
493	 66.60	+1	489564..491141	-	525	78212049	-	Syncc9605_0499	-	glycerol-3-phosphate oxidase
494	 66.80	+1	491134..492639	-	501	78212050	-	Syncc9605_0500	-	putative glycerol kinase
495	 62.96	0	492691..494121	+	476	78212051	-	Syncc9605_0501	-	alpha amylase domain-containing protein
496	 61.45	0	494401..494841	+	146	78212052	-	Syncc9605_0502	-	3-dehydroquinate dehydratase
497	 62.03	0	494838..495527	+	229	78212053	-	Syncc9605_0503	-	tRNA-(MS(2)IO(6)A)-hydroxylase-like
498	 63.09	0	495515..497191	-	558	78212054	-	Syncc9605_0504	-	putative sulfate transporter
499	 62.96	0	497198..497602	-	134	78212055	-	Syncc9605_0505	-	hypothetical protein
500	 61.53	0	497713..498705	+	330	78212056	-	Syncc9605_0506	-	heat shock protein DnaJ-like
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.