IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
357	 60.81	0	370650..371195	-	181	78211914	rplF	Syncc9605_0362	-	50S ribosomal protein L6
358	 61.94	0	371210..371611	-	133	78211915	rpsH	Syncc9605_0363	-	30S ribosomal protein S8
359	 60.74	0	371631..372170	-	179	78211916	rplE	Syncc9605_0364	-	50S ribosomal protein L5
360	 61.06	0	372211..372567	-	118	78211917	rplX	Syncc9605_0365	-	50S ribosomal protein L24
361	 60.93	0	372570..372935	-	121	78211918	rplN	Syncc9605_0366	-	50S ribosomal protein L14
362	 58.92	0	372932..373228	-	98	78211919	rpsQ	Syncc9605_0367	-	30S ribosomal protein S17
363	 64.29	0	373246..373455	-	69	78211920	-	Syncc9605_0368	-	50S ribosomal protein L29
364	 60.59	0	373458..373934	-	158	78211921	rplP	Syncc9605_0369	-	50S ribosomal protein L16
365	 63.79	0	373951..374679	-	242	78211922	rpsC	Syncc9605_0370	-	30S ribosomal protein S3
366	 63.11	0	374700..375065	-	121	78211923	rplV	Syncc9605_0371	-	50S ribosomal protein L22
367	 56.52	0	375069..375344	-	91	78211924	rpsS	Syncc9605_0372	-	30S ribosomal protein S19
368	 65.05	0	375380..376243	-	287	78211925	rplB	Syncc9605_0373	-	50S ribosomal protein L2
369	 62.38	0	376259..376561	-	100	78211926	rplW	Syncc9605_0374	-	50S ribosomal protein L23
370	 62.11	0	376554..377189	-	211	78211927	rplD	Syncc9605_0375	-	50S ribosomal protein L4
371	 63.17	0	377189..377845	-	218	78211928	rplC	Syncc9605_0376	-	50S ribosomal protein L3
372	 60.17	0	378227..378688	+	153	78211929	-	Syncc9605_0377	-	NADH dehydrogenase I subunit N
373	 65.79	+1	378655..379686	+	343	78211930	-	Syncc9605_0378	-	putative LdpA protein
374	 65.69	+1	379709..381349	+	546	78211931	-	Syncc9605_0379	-	ATPase
375	 63.60	0	381533..382282	+	249	78211932	-	Syncc9605_0380	-	hypothetical protein
376	 60.18	0	382369..383493	+	374	78211933	recA	Syncc9605_0381	-	recombinase A
377	 61.45	0	383496..383840	-	114	78211934	-	Syncc9605_0382	-	hypothetical protein
378	 65.06	0	383910..384158	-	82	78211935	-	Syncc9605_0383	-	hypothetical protein
379	 64.38	0	384194..385639	-	481	78211936	-	Syncc9605_0384	-	hypothetical protein
380	 65.16	0	385678..386604	+	308	78211937	-	Syncc9605_0385	-	arogenate dehydrogenase
381	 65.54	0	386588..388090	-	500	78211938	-	Syncc9605_0386	-	phytoene dehydrogenase related enzyme
382	 61.82	0	388141..389028	+	295	78211939	-	Syncc9605_0387	-	hypothetical protein
383	 58.40	0	389032..389418	-	128	78211940	-	Syncc9605_0388	-	hypothetical protein
384	 61.81	0	389483..389935	+	150	78211941	-	Syncc9605_0389	-	hypothetical protein
385	 61.57	0	389928..391064	+	378	78211942	-	Syncc9605_0390	-	rhodanese-like protein
386	 63.19	0	391074..392222	-	382	78211943	-	Syncc9605_0391	-	hypothetical protein
387	 63.53	0	392276..393103	+	275	78211944	-	Syncc9605_0392	-	hypothetical protein
388	 59.40	0	393120..393587	-	155	78211945	-	Syncc9605_0393	-	S-adenosylmethionine decarboxylase proenzyme
389	 64.20	0	393619..394713	-	364	78211946	-	Syncc9605_0394	-	DNA replication and repair protein RecF
390	 60.31	0	394907..395362	-	151	78211947	-	Syncc9605_0395	-	hypothetical protein
391	 61.22	0	395369..398362	-	997	78211948	-	Syncc9605_0396	-	phosphoenolpyruvate carboxylase
392	 60.98	0	398395..399555	-	386	78211949	-	Syncc9605_0397	-	glutamate--cysteine ligase, putative
393	 62.25	0	399534..401051	-	505	78211950	-	Syncc9605_0398	-	anthranilate synthase, component I
394	 57.41	0	401112..401543	-	143	78211951	-	Syncc9605_0399	-	photosystem I reaction center subunit II (PsaD)
395	 64.30	0	401646..402995	-	449	78211952	-	Syncc9605_0400	-	hypothetical protein
396	 61.02	0	402992..404230	-	412	78211953	-	Syncc9605_0401	-	cell division protein
397	 65.00	0	404233..405309	-	358	78211954	-	Syncc9605_0402	-	MRP protein-like
398	 62.53	0	405425..406513	+	362	78211955	-	Syncc9605_0403	-	coproporphyrinogen III oxidase
399	 62.53	0	406510..407355	-	281	78211956	-	Syncc9605_0404	-	hypothetical protein
400	 62.52	0	407359..407913	-	184	78211957	-	Syncc9605_0405	-	hypothetical protein
401	 59.64	0	407964..408347	-	127	78211958	-	Syncc9605_0406	-	PadR family transcriptional regulator
402	 61.55	0	408463..409107	+	214	78211959	-	Syncc9605_0407	-	3'-5' exonuclease
403	 61.63	0	409117..409374	-	85	78211960	-	Syncc9605_0408	-	hypothetical protein
404	 64.98	0	409394..410581	-	395	78211961	-	Syncc9605_0409	-	hypothetical protein
405	 62.05	0	410751..411248	-	165	78211962	-	Syncc9605_0410	-	hypothetical protein
406	 60.38	0	411224..411382	-	52	78211963	-	Syncc9605_0411	-	hypothetical protein
407	 63.22	0	411411..412397	+	328	78211964	-	Syncc9605_0412	-	hypothetical protein
408	 60.82	0	412407..413039	-	210	78211965	-	Syncc9605_0413	-	hypothetical protein
409	 62.51	0	413159..414265	-	368	78211966	-	Syncc9605_0414	-	phosphoribosylaminoimidazole synthetase
410	 60.37	0	414517..415056	+	179	78211967	-	Syncc9605_0415	-	rare lipoprotein A
411	 62.51	0	415128..416570	+	480	78211968	-	Syncc9605_0416	-	bifunctional pantoate ligase/cytidylate kinase
412	 61.43	0	416554..417030	-	158	78211969	-	Syncc9605_0417	-	protein tyrosine phosphatase
413	 43.68	-2	417023..418501	-	492	78211970	-	Syncc9605_0418	-	HEAT repeat-containing PBS lyase
414	 43.86	-2	418543..419169	-	208	78211971	-	Syncc9605_0419	-	hypothetical protein
415	 58.28	0	419201..419689	-	162	78211972	-	Syncc9605_0420	-	phycocyanin, alpha subunit
416	 58.57	0	419727..420245	-	172	78211973	-	Syncc9605_0421	-	phycocyanin, beta subunit
417	 59.44	0	420382..421197	-	271	78211974	-	Syncc9605_0422	-	phycoerythrobilin:ferredoxin oxidoreductase
418	 49.15	-1	421194..421901	-	235	78211975	-	Syncc9605_0423	-	dihydrobiliverdin:ferredoxin oxidoreductase
419	 47.55	-1	421907..422518	-	203	78211976	-	Syncc9605_0424	-	hypothetical protein
420	 47.17	-1	422581..422898	-	105	78211977	-	Syncc9605_0425	-	hypothetical protein
421	 56.76	0	423124..423678	+	184	78211978	-	Syncc9605_0426	-	C-phycoerythrin class I beta chain
422	 56.57	0	423740..424234	+	164	78211979	-	Syncc9605_0427	-	C-phycoerythrin class I alpha chain
423	 44.37	-2	424369..424803	+	144	78211980	-	Syncc9605_0428	-	hypothetical protein
424	 41.93	-2	425302..426627	+	441	78211981	-	Syncc9605_0429	-	putative bilin biosynthesis protein (CpeY)
425	 44.76	-2	426701..427339	+	212	78211982	-	Syncc9605_0430	-	putative bilin biosynthesis protein cpeZ
426	 46.38	-2	427349..427693	-	114	78211983	-	Syncc9605_0431	-	hypothetical protein
427	 46.78	-2	427804..428703	-	299	78211984	-	Syncc9605_0432	-	HEAT repeat-containing PBS lyase
428	 50.63	-1	428840..429706	-	288	78211985	-	Syncc9605_0433	-	C-phycoerythrin class II gamma chain, linker polypeptide
429	 61.65	0	430045..430542	-	165	78211986	-	Syncc9605_0434	-	C-phycoerythrin class II alpha chain
430	 61.51	0	430589..431170	-	193	78211987	-	Syncc9605_0435	-	C-phycoerythrin class II beta chain
431	 48.79	-1	431307..432503	-	398	78211988	-	Syncc9605_0436	-	HEAT repeat-containing PBS lyase
432	 44.86	-2	432753..433073	+	106	78211989	-	Syncc9605_0437	-	hypothetical protein
433	 46.86	-1	433055..433357	+	100	78211990	-	Syncc9605_0438	-	hypothetical protein
434	 39.54	-2	433661..433966	-	101	78211991	-	Syncc9605_0439	-	CpeR-like, phycoerythrin linker-proteins region
435	 44.55	-2	433968..434582	-	204	78211992	-	Syncc9605_0440	-	CpeT-like
436	 43.84	-2	434592..435086	-	164	78211993	-	Syncc9605_0441	-	hypothetical protein
437	 51.29	-1	435423..436157	-	244	78211994	-	Syncc9605_0442	-	phycobilisome linker polypeptide
438	 56.06	0	436233..437882	-	549	78211995	-	Syncc9605_0443	-	phycobilisome linker polypeptide
439	 57.85	0	437938..438822	-	294	78211996	-	Syncc9605_0444	-	phycobilisome linker polypeptide
440	 59.86	0	438995..439714	-	239	78211997	-	Syncc9605_0445	-	hypothetical protein
441	 61.79	0	439716..440474	-	252	78211998	-	Syncc9605_0446	-	phycobilisome rod-core linker polypeptide (L-RC 28.5)
442	 58.16	0	440546..441121	-	191	78211999	-	Syncc9605_0447	-	phycobilisome polypeptide
443	 59.86	0	441118..441543	-	141	78212000	-	Syncc9605_0448	-	hypothetical protein
444	 61.04	0	441653..442309	-	218	78212001	-	Syncc9605_0449	-	hypothetical protein
445	 61.14	0	442351..442857	+	168	78212002	-	Syncc9605_0450	-	hypothetical protein
446	 58.33	0	442858..443097	-	79	78212003	-	Syncc9605_0451	-	hypothetical protein
447	 53.95	0	444590..445108	+	172	78212004	-	Syncc9605_0452	-	hypothetical protein
448	 64.08	0	445101..446183	+	360	78212005	-	Syncc9605_0453	-	hypothetical protein
449	 64.16	0	446208..446645	+	145	78212006	-	Syncc9605_0454	-	hypothetical protein
450	 65.53	0	446726..447163	+	145	78212007	-	Syncc9605_0455	-	hypothetical protein
451	 66.02	+1	447402..448646	+	414	78212008	-	Syncc9605_0456	-	hypothetical protein
452	 65.33	0	448643..448867	+	74	78212009	-	Syncc9605_0457	-	hypothetical protein
453	 48.11	-1	448966..449283	-	105	78212010	-	Syncc9605_0458	-	hypothetical protein
454	 54.97	0	450236..450577	+	113	78212011	-	Syncc9605_0459	-	hypothetical protein
455	 62.04	0	450579..451010	-	143	78212012	-	Syncc9605_0460	-	hypothetical protein
456	 62.98	0	452622..453272	-	216	78212013	-	Syncc9605_0463	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.