IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
235	 58.27	0	249918..250286	+	122	78211793	-	Syncc9605_0241	-	hypothetical protein
236	 61.43	0	250287..250859	-	190	78211794	-	Syncc9605_0242	-	esterase
237	 64.24	0	250916..252478	+	520	78211795	-	Syncc9605_0243	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
238	 61.44	0	252533..252991	+	152	78211796	-	Syncc9605_0244	-	hypothetical protein
239	 61.00	0	252999..253598	-	199	78211797	-	Syncc9605_0245	-	hypothetical protein
240	 59.08	0	253668..254867	-	399	78211798	-	Syncc9605_0246	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
241	 62.12	0	254978..256450	-	490	78211799	-	Syncc9605_0247	-	ammonium transporter
242	 64.18	0	256553..257317	-	254	78211800	-	Syncc9605_0248	-	sugar fermentation stimulation protein
243	 63.87	0	257386..258993	+	535	78211801	-	Syncc9605_0249	-	integral membrane protein MviN
244	 56.44	0	258980..259243	-	87	78211802	-	Syncc9605_0250	-	hypothetical protein
245	 62.20	0	259271..259561	-	96	78211803	-	Syncc9605_0251	-	hypothetical protein
246	 63.01	0	259604..259849	-	81	78211804	-	Syncc9605_0252	-	hypothetical protein
247	 61.57	0	260108..261403	+	431	78211805	glyA	Syncc9605_0253	-	serine hydroxymethyltransferase
248	 62.38	0	261518..262660	+	380	78211806	-	Syncc9605_0254	-	putative glycosyltransferase
249	 62.78	0	262653..263912	+	419	78211807	-	Syncc9605_0255	-	competence/damage-inducible protein cinA
250	 61.80	0	263939..265357	+	472	78211808	-	Syncc9605_0256	-	isopropylmalate isomerase large subunit
251	 58.37	0	265357..265971	+	204	78211809	-	Syncc9605_0257	-	3-isopropylmalate dehydratase, small subunit
252	 61.71	0	266023..266466	+	147	78211810	-	Syncc9605_0258	-	hypothetical protein
253	 59.96	0	266467..269253	-	928	78211811	-	Syncc9605_0259	-	hypothetical protein
254	 55.83	0	269408..269527	-	39	78211812	-	Syncc9605_0260	-	photosystem II reaction center I protein I
255	 65.32	0	269565..272531	+	988	78211813	-	Syncc9605_0261	-	alpha mannosidase
256	 58.87	0	272519..272659	-	46	78211814	psbN	Syncc9605_0262	-	photosystem II reaction center protein N
257	 57.21	0	272744..272944	+	66	78211815	-	Syncc9605_0263	-	photosystem II reaction center protein H
258	 56.71	0	272954..273184	+	76	78211816	-	Syncc9605_0264	-	twin arginine-targeting protein translocase
259	 60.52	0	273199..273816	+	205	78211817	-	Syncc9605_0265	-	peptidyl-tRNA hydrolase
260	 60.47	0	273816..274073	+	85	78211818	-	Syncc9605_0266	-	hypothetical protein
261	 62.42	0	274051..274497	-	148	78211819	-	Syncc9605_0267	-	hypothetical protein
262	 62.50	0	274494..275645	-	383	78211820	-	Syncc9605_0268	-	hypothetical protein
263	 59.97	0	275673..276389	-	238	78211821	-	Syncc9605_0269	-	Crp/FNR family transcriptional regulator
264	 64.25	0	276448..277191	-	247	78211822	-	Syncc9605_0270	-	RNAse PH
265	 61.50	0	277337..277936	+	199	78211823	-	Syncc9605_0271	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
266	 56.73	0	277936..278529	+	197	78211824	dcd	Syncc9605_0272	-	deoxycytidine triphosphate deaminase
267	 60.19	0	278537..279292	-	251	78211825	-	Syncc9605_0273	-	thymidylate synthase complementing protein ThyX
268	 60.59	0	279304..279879	-	191	78211826	-	Syncc9605_0274	-	thioredoxin-like protein TxlA
269	 57.74	0	279943..280446	+	167	78211827	-	Syncc9605_0275	-	hypothetical protein
270	 63.98	0	280351..282396	-	681	78211828	-	Syncc9605_0276	-	soluble lytic transglycosylase
271	 63.01	0	282550..283944	+	464	78211829	-	Syncc9605_0277	-	phosphoglucosamine mutase
272	 64.47	0	283931..284884	-	317	78211830	-	Syncc9605_0278	-	hypothetical protein
273	 62.57	0	284881..286197	-	438	78211831	-	Syncc9605_0279	-	bicarbonate transporter
274	 60.28	0	286207..286911	-	234	78211832	trmB	Syncc9605_0280	-	tRNA (guanine-N(7))-methyltransferase
275	 64.27	0	286936..288231	-	431	78211833	-	Syncc9605_0281	-	hypothetical protein
276	 63.56	0	288301..288912	+	203	78211834	-	Syncc9605_0282	-	hypothetical protein
277	 63.61	0	288912..289205	+	97	78211835	-	Syncc9605_0283	-	hypothetical protein
278	 63.93	0	289190..292114	-	974	78211836	ileS	Syncc9605_0284	-	isoleucyl-tRNA synthetase
279	 63.12	0	292142..292648	-	168	78211837	-	Syncc9605_0285	-	hypothetical protein
280	 60.10	0	292821..293870	+	349	78211838	-	Syncc9605_0286	-	beta-carotene hydroxylase
281	 61.22	0	293878..294171	-	97	78211839	gatC	Syncc9605_0287	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
282	 65.78	+1	294168..294956	-	262	78211840	-	Syncc9605_0288	-	hypothetical protein
283	 61.90	0	295000..295146	-	48	78211841	-	Syncc9605_0289	-	hypothetical protein
284	 59.36	0	295185..295841	-	218	78211842	-	Syncc9605_0290	-	hypothetical protein
285	 61.67	0	295906..296586	+	226	78211843	-	Syncc9605_0291	-	DNA-3-methyladenine glycosylase
286	 62.86	0	296583..297632	+	349	78211844	pyrB	Syncc9605_0292	-	aspartate carbamoyltransferase catalytic subunit
287	 59.80	0	297572..299086	-	504	78211845	-	Syncc9605_0293	-	putative type 2 NADH dehydrogenase
288	 59.16	0	299159..299491	-	110	78211846	-	Syncc9605_0294	-	hypothetical protein
289	 58.71	0	299715..299915	-	66	78211847	-	Syncc9605_0295	-	hypothetical protein
290	 60.20	0	300245..300445	+	66	78211848	-	Syncc9605_0296	-	hypothetical protein
291	 63.56	0	300435..301721	+	428	78211849	-	Syncc9605_0297	-	phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase
292	 58.63	0	301694..302029	-	111	78211850	-	Syncc9605_0298	-	hypothetical protein
293	 58.36	0	302120..302950	+	276	78211851	-	Syncc9605_0299	-	photosystem II manganese-stabilizing polypeptide
294	 61.72	0	303057..304229	+	390	78211852	-	Syncc9605_0300	-	sulfate adenylyltransferase
295	 59.70	0	304274..306124	+	616	78211853	-	Syncc9605_0301	-	FtsH peptidase
296	 60.68	0	306096..306797	+	233	78211854	-	Syncc9605_0302	-	2-keto-3-deoxy-phosphogluconate aldolase
297	 61.75	0	306860..307327	+	155	78211855	-	Syncc9605_0303	-	hypothetical protein
298	 61.04	0	307347..308447	-	366	78211856	-	Syncc9605_0304	-	chorismate synthase
299	 61.44	0	308481..308939	-	152	78211857	-	Syncc9605_0305	-	hypothetical protein
300	 58.63	0	308936..309694	-	252	78211858	-	Syncc9605_0306	-	hypothetical protein
301	 59.63	0	309915..310994	-	359	78211859	-	Syncc9605_0307	-	photosystem q(b) protein
302	 57.80	0	311166..312755	+	529	78211860	-	Syncc9605_0308	-	Elongator protein 3/MiaB/NifB
303	 59.68	0	312695..313567	-	290	78211861	-	Syncc9605_0309	-	hypothetical protein
304	 57.94	0	313572..313892	-	106	78211862	clpS	Syncc9605_0310	-	ATP-dependent Clp protease adaptor protein ClpS
305	 60.96	0	313940..315166	-	408	78211863	-	Syncc9605_0311	-	L,L-diaminopimelate aminotransferase
306	 62.39	0	315220..317883	+	887	78211864	-	Syncc9605_0312	-	Elongator protein 3/MiaB/NifB
307	 60.54	0	318140..320080	+	646	78211865	-	Syncc9605_0313	-	RNAse E
308	 63.83	0	320086..320685	+	199	78211866	-	Syncc9605_0314	-	RNase HII
309	 61.81	0	320632..321207	-	191	78211867	-	Syncc9605_0315	-	hypothetical protein
310	 61.30	0	321227..322102	+	291	78211868	-	Syncc9605_0316	-	prephenate dehydratase
311	 64.04	0	322106..323020	-	304	78211869	-	Syncc9605_0317	-	sterol-C-methyltransferase
312	 57.55	0	323038..323673	-	211	78211870	-	Syncc9605_0318	-	peptidase S16, lon-like
313	 56.39	0	323730..324050	-	106	78211871	rpsJ	Syncc9605_0319	-	30S ribosomal protein S10
314	 60.42	0	324172..325371	-	399	78211872	tuf	Syncc9605_0320	-	elongation factor Tu
315	 59.73	0	325416..327491	-	691	78211873	-	Syncc9605_0321	-	elongation factor G
316	 64.33	0	327581..328051	-	156	78211874	-	Syncc9605_0322	-	30S ribosomal protein S7
317	 62.40	0	328093..328467	-	124	78211875	rpsL	Syncc9605_0323	-	30S ribosomal protein S12
318	 64.53	0	328540..328866	-	108	78211876	-	Syncc9605_0324	-	hypothetical protein
319	 64.18	0	328901..330586	-	561	78211877	-	Syncc9605_0325	-	hypothetical protein
320	 62.93	0	330689..335290	+	1533	78211878	-	Syncc9605_0326	-	glutamate synthase (ferredoxin)
321	 65.37	0	335306..335614	+	102	78211879	-	Syncc9605_0327	-	hypothetical protein
322	 63.10	0	335592..336461	-	289	78211880	-	Syncc9605_0328	-	lipoyl synthase
323	 63.91	0	336689..338428	-	579	78211881	-	Syncc9605_0329	-	precorrin-3 methyltransferase
324	 60.17	0	338498..339805	-	435	78211882	-	Syncc9605_0330	-	hypothetical protein
325	 59.59	0	340210..342513	+	767	78211883	psaA	Syncc9605_0331	-	photosystem I P700 chlorophyll a apoprotein A1
326	 59.80	0	342536..344749	+	737	78211884	psaB	Syncc9605_0332	-	photosystem I P700 chlorophyll a apoprotein A2
327	 58.60	0	344815..345645	+	276	78211885	-	Syncc9605_0333	-	hypothetical protein
328	 60.92	0	345657..346613	-	318	78211886	-	Syncc9605_0334	-	hypothetical protein
329	 52.00	-1	346703..347827	-	374	78211887	-	Syncc9605_0335	-	hypothetical protein
330	 62.58	0	347824..350934	-	1036	78211888	-	Syncc9605_0336	-	RND family multidrug efflux transporter
331	 61.18	0	351043..351534	-	163	78211889	-	Syncc9605_0337	-	photosystem I reaction center protein subunit XI
332	 57.26	0	351578..351694	-	38	109150034	psaI	Syncc9605_0337a	-	photosystem I reaction center subunit VIII
333	 66.67	+1	351785..352252	+	155	78211890	-	Syncc9605_0338	-	hypothetical protein
334	 61.16	0	352210..353172	-	320	78211891	-	Syncc9605_0339	-	glycosyl transferase family protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.