IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2495	 59.69	0	2359782..2360240	+	152	78214046	rplI	Syncc9605_2542	-	50S ribosomal protein L9
2496	 63.68	0	2360312..2361718	+	468	78214047	-	Syncc9605_2543	-	primary replicative DNA helicase
2497	 61.39	0	2361804..2362106	+	100	78214048	-	Syncc9605_2544	-	hypothetical protein
2498	 65.27	0	2362180..2364111	+	643	78214049	-	Syncc9605_2545	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2499	 63.86	0	2364136..2364813	+	225	78214050	-	Syncc9605_2546	-	hypothetical protein
2500	 65.18	0	2364873..2365409	+	178	78214051	-	Syncc9605_2547	-	hypothetical protein
2501	 65.28	0	2365434..2365937	+	167	78214052	-	Syncc9605_2548	-	hypothetical protein
2502	 68.16	+1	2365934..2366467	-	177	78214053	-	Syncc9605_2549	-	hypothetical protein
2503	 68.23	+1	2366573..2367148	-	191	78214054	-	Syncc9605_2550	-	hypothetical protein
2504	 60.95	0	2367193..2367612	+	139	78214055	-	Syncc9605_2551	-	hypothetical protein
2505	 66.67	+1	2367605..2369647	+	680	78214056	ligA	Syncc9605_2552	-	NAD-dependent DNA ligase LigA
2506	 64.52	0	2369644..2369829	+	61	78214057	-	Syncc9605_2553	-	hypothetical protein
2507	 66.35	+1	2369805..2370428	-	207	78214058	-	Syncc9605_2554	-	hypothetical protein
2508	 62.61	0	2370463..2371251	-	262	78214059	-	Syncc9605_2555	-	membrane protein, multidrug efflux associated
2509	 63.78	0	2371251..2372048	-	265	78214060	-	Syncc9605_2556	-	putative multidrug efflux ABC transporter
2510	 66.15	+1	2372048..2373022	-	324	78214061	-	Syncc9605_2557	-	ATPase
2511	 65.32	0	2373027..2375771	-	914	78214062	valS	Syncc9605_2558	-	valyl-tRNA synthetase
2512	 54.84	0	2375860..2377110	+	416	78214063	-	Syncc9605_2559	-	ABC-type sugar transport system periplasmic component-like
2513	 60.92	0	2377107..2378429	+	440	78214064	-	Syncc9605_2560	-	small-conductance mechanosensitive channel-like
2514	 62.18	0	2378409..2379032	-	207	78214065	-	Syncc9605_2561	-	hypothetical protein
2515	 62.67	0	2379029..2379478	-	149	78214066	-	Syncc9605_2562	-	protein phosphatase 2A
2516	 61.24	0	2379533..2379790	+	85	78214067	-	Syncc9605_2563	-	hypothetical protein
2517	 66.34	+1	2379811..2380719	+	302	78214068	-	Syncc9605_2564	-	short-chain dehydrogenase/reductase
2518	 62.24	0	2380697..2382685	+	662	78214069	-	Syncc9605_2565	-	sigma-54 factor
2519	 62.77	0	2382690..2383100	+	136	78214070	-	Syncc9605_2566	-	ferric uptake regulator family protein
2520	 64.63	0	2383097..2383834	+	245	78214071	-	Syncc9605_2567	-	hypothetical protein
2521	 62.03	0	2383873..2384109	+	78	78214072	-	Syncc9605_2568	-	putative high light inducible protein
2522	 62.75	0	2384167..2384472	+	101	78214073	-	Syncc9605_2569	-	hypothetical protein
2523	 60.32	0	2384560..2384748	-	62	78214074	-	Syncc9605_2570	-	hypothetical protein
2524	 56.42	0	2385705..2386982	+	425	78214075	-	Syncc9605_2571	-	phage integrase family protein
2525	 56.32	0	2387128..2387388	+	86	78214076	-	Syncc9605_2572	-	hypothetical protein
2526	 60.24	0	2387404..2387652	+	82	78214077	-	Syncc9605_2573	-	hypothetical protein
2527	 60.58	0	2387789..2389069	+	426	78214078	-	Syncc9605_2574	-	hypothetical protein
2528	 58.43	0	2389070..2390137	+	355	78214079	-	Syncc9605_2575	-	ATPase-like
2529	 45.77	-2	2390358..2390558	+	66	78214080	-	Syncc9605_2576	-	hypothetical protein
2530	 46.38	-2	2391346..2391621	-	91	78214081	-	Syncc9605_2577	-	hypothetical protein
2531	 45.87	-2	2391726..2392052	-	108	78214082	-	Syncc9605_2578	-	hypothetical protein
2532	 42.84	-2	2392079..2392825	-	248	78214083	-	Syncc9605_2579	-	phycobilisome rod-core linker polypeptide (L-RC 28.5)
2533	 40.16	-2	2392983..2393348	+	121	78214084	-	Syncc9605_2580	-	hypothetical protein
2534	 40.38	-2	2393658..2394026	+	122	78214085	-	Syncc9605_2581	-	hypothetical protein
2535	 36.30	-2	2394917..2395186	+	89	78214086	-	Syncc9605_2582	-	hypothetical protein
2536	 41.28	-2	2395221..2395736	-	171	161353758	-	Syncc9605_2583	-	flavodoxin FldA
2537	 53.57	0	2396224..2396475	+	83	78214088	-	Syncc9605_2584	-	hypothetical protein
2538	 48.28	-1	2397811..2398071	+	86	78214089	-	Syncc9605_2585	-	hypothetical protein
2539	 61.75	0	2399624..2399989	-	121	78214090	-	Syncc9605_2586	-	hypothetical protein
2540	 62.35	0	2400254..2400763	+	169	78214091	-	Syncc9605_2587	-	hypothetical protein
2541	 59.59	0	2400797..2401630	+	277	78214092	mazG	Syncc9605_2588	-	nucleoside triphosphate pyrophosphohydrolase
2542	 63.19	0	2401627..2402058	-	143	78214093	-	Syncc9605_2589	-	hypothetical protein
2543	 64.41	0	2402328..2403170	+	280	78214094	-	Syncc9605_2590	-	spermidine synthase
2544	 64.04	0	2403167..2404042	+	291	78214095	-	Syncc9605_2591	-	agmatinase
2545	 58.59	0	2404039..2404434	-	131	78214096	-	Syncc9605_2592	-	cyclic nucleotide-binding domain-containing protein
2546	 62.91	0	2404519..2404731	-	70	78214097	-	Syncc9605_2593	-	hypothetical protein
2547	 64.54	0	2404838..2405965	+	375	78214098	-	Syncc9605_2594	-	glycine cleavage system aminomethyltransferase T
2548	 64.86	0	2406015..2407844	+	609	78214099	aspS	Syncc9605_2595	-	aspartyl-tRNA synthetase
2549	 63.40	0	2407948..2409081	+	377	78214100	-	Syncc9605_2596	-	type II alternative RNA polymerase sigma factor
2550	 60.42	0	2409329..2410978	+	549	78214101	-	Syncc9605_2598	-	CTP synthetase
2551	 62.14	0	2410988..2411605	+	205	78214102	-	Syncc9605_2599	-	organic radical activating protein
2552	 51.29	-1	2411856..2415803	+	1315	78214103	-	Syncc9605_2600	-	subtilisin-like serine protease-like
2553	 56.73	0	2415821..2416675	+	284	78214104	-	Syncc9605_2601	-	3-hydroxyacid dehydrogenase
2554	 65.64	0	2416672..2417352	+	226	78214105	-	Syncc9605_2602	-	ExsB
2555	 64.36	0	2417349..2418647	+	432	78214106	-	Syncc9605_2603	-	anthranilate synthase
2556	 63.96	0	2418644..2419456	+	270	78214107	-	Syncc9605_2604	-	aminotransferase class IV
2557	 64.39	0	2419476..2420267	-	263	78214108	-	Syncc9605_2605	-	mannosyl-3-phosphoglycerate phosphatase
2558	 61.40	0	2420264..2421991	-	575	78214109	-	Syncc9605_2606	-	alpha amylase domain-containing protein
2559	 59.71	0	2422019..2423311	+	430	78214110	-	Syncc9605_2607	-	hypothetical protein
2560	 50.20	-1	2423769..2424023	+	84	78214111	-	Syncc9605_2608	-	hypothetical protein
2561	 61.87	0	2424052..2424468	-	138	78214112	-	Syncc9605_2609	-	hypothetical protein
2562	 59.79	0	2424691..2425170	+	159	78214113	-	Syncc9605_2610	-	hypothetical protein
2563	 51.33	-1	2425289..2426338	+	349	78214114	amiF	Syncc9605_2611	-	formamidase
2564	 56.52	0	2426508..2427128	+	206	78214115	-	Syncc9605_2612	-	formamidase
2565	 51.81	-1	2427798..2428073	+	91	78214116	-	Syncc9605_2615	-	hypothetical protein
2566	 47.09	-1	2428139..2428894	-	251	78214117	-	Syncc9605_2616	-	ATPase
2567	 48.53	-1	2428916..2429665	-	249	78214118	-	Syncc9605_2617	-	putative ATP-binding subunit of urea ABC transport system
2568	 44.56	-2	2429697..2430845	-	382	78214119	-	Syncc9605_2618	-	putative membrane protein of urea ABC transport system
2569	 48.66	-1	2430867..2432027	-	386	78214120	-	Syncc9605_2619	-	putative urea ABC transporter
2570	 53.04	-1	2432101..2433399	-	432	78214121	-	Syncc9605_2620	-	putative urea ABC transporter, substrate binding protein
2571	 60.07	0	2433517..2434122	-	201	78214122	-	Syncc9605_2621	-	urease accessory protein UreG
2572	 63.54	0	2434122..2434793	-	223	78214123	-	Syncc9605_2622	-	urease accessory protein F
2573	 62.22	0	2434790..2435239	-	149	78214124	ureE	Syncc9605_2623	-	urease accessory protein UreE
2574	 65.75	+1	2435300..2436283	+	327	78214125	-	Syncc9605_2624	-	urease accessory protein D
2575	 63.37	0	2436302..2436604	+	100	78214126	ureA	Syncc9605_2625	-	urease subunit gamma
2576	 64.80	0	2436615..2436935	+	106	78214127	ureB	Syncc9605_2626	-	urease subunit beta
2577	 65.44	0	2436939..2438648	+	569	78214128	ureC	Syncc9605_2627	-	urease subunit alpha
2578	 63.50	0	2438645..2439403	+	252	78214129	-	Syncc9605_2628	-	glutamine amidotransferase class-I
2579	 60.71	0	2439595..2439762	+	55	78214130	-	Syncc9605_2629	-	hypothetical protein
2580	 58.90	0	2439843..2440061	+	72	78214131	-	Syncc9605_2630	-	hypothetical protein
2581	 61.33	0	2440144..2440818	-	224	78214132	-	Syncc9605_2631	-	hypothetical protein
2582	 63.41	0	2440815..2442104	-	429	78214133	-	Syncc9605_2632	-	allantoate amidohydrolase
2583	 63.01	0	2442199..2444223	-	674	78214134	-	Syncc9605_2633	-	asparagine synthase (glutamine-hydrolysing)
2584	 58.05	0	2444233..2445288	-	351	78214135	-	Syncc9605_2634	-	aspartate carbamoyltransferase
2585	 63.17	0	2445656..2447086	-	476	78214136	-	Syncc9605_2635	-	sodium/solute transporter family urea transporter
2586	 63.40	0	2447379..2448878	+	499	78214137	-	Syncc9605_2636	-	hypothetical protein
2587	 60.24	0	2448872..2449867	+	331	78214138	-	Syncc9605_2637	-	hypothetical protein
2588	 63.11	0	2449840..2450739	+	299	78214139	-	Syncc9605_2638	-	transglutaminase-like
2589	 61.75	0	2450727..2451275	-	182	78214140	-	Syncc9605_2639	-	hypothetical protein
2590	 65.33	0	2451298..2452341	-	347	78214141	-	Syncc9605_2640	-	GTP cyclohydrolase subunit MoaA
2591	 65.24	0	2452338..2452898	-	186	78214142	-	Syncc9605_2641	-	molybdenum cofactor guanylyltransferase
2592	 61.80	0	2453197..2454738	+	513	78214143	-	Syncc9605_2642	-	nitrate transporter
2593	 64.34	0	2454821..2457052	+	743	78214144	-	Syncc9605_2643	-	assimilatory nitrate reductase (ferredoxin) precursor
2594	 62.39	0	2457033..2457500	-	155	78214145	-	Syncc9605_2644	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.