IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2421	 62.29	0	2270233..2271306	-	357	78213972	-	Syncc9605_2464	-	L-threonine O-3-phosphate decarboxylase
2422	 64.13	0	2271382..2272563	-	393	78213973	-	Syncc9605_2465	-	dihydroorotate dehydrogenase 2
2423	 62.85	0	2272572..2273330	-	252	78213974	-	Syncc9605_2466	-	RNase HI
2424	 64.88	0	2273382..2274110	+	242	78213975	-	Syncc9605_2467	-	hypothetical protein
2425	 59.49	0	2274384..2274773	-	129	78213976	rplL	Syncc9605_2468	-	50S ribosomal protein L7/L12
2426	 59.66	0	2274828..2275355	-	175	78213977	rplJ	Syncc9605_2469	-	50S ribosomal protein L10
2427	 61.16	0	2275593..2276300	-	235	78213978	rplA	Syncc9605_2470	-	50S ribosomal protein L1
2428	 59.39	0	2276372..2276797	-	141	78213979	rplK	Syncc9605_2471	-	50S ribosomal protein L11
2429	 62.03	0	2276907..2277575	-	222	78213980	nusG	Syncc9605_2472	-	transcription antitermination protein NusG
2430	 59.45	0	2277597..2277887	-	96	78213981	secE	Syncc9605_2473	-	preprotein translocase subunit SecE
2431	 64.32	0	2277910..2280684	-	924	78213982	-	Syncc9605_2474	-	ATPase
2432	 60.15	0	2280693..2281091	-	132	78213983	-	Syncc9605_2475	-	glyoxalase I
2433	 64.04	0	2281204..2282496	+	430	78213984	-	Syncc9605_2476	-	enolase
2434	 63.34	0	2282514..2284166	-	550	78213985	-	Syncc9605_2477	-	kinase
2435	 63.46	0	2284166..2284477	-	103	78213986	-	Syncc9605_2478	-	hypothetical protein
2436	 63.48	0	2284523..2285149	-	208	78213987	-	Syncc9605_2479	-	hypothetical protein
2437	 40.23	-2	2285545..2286342	-	265	78213988	-	Syncc9605_2480	-	hypothetical protein
2438	 41.45	-2	2286339..2287397	-	352	78213989	-	Syncc9605_2481	-	hypothetical protein
2439	 40.42	-2	2288721..2289101	-	126	78213990	-	Syncc9605_2482	-	hypothetical protein
2440	 43.22	-2	2289108..2289896	+	262	78213991	-	Syncc9605_2483	-	hypothetical protein
2441	 38.57	-2	2290332..2290904	+	190	78213992	-	Syncc9605_2484	-	hypothetical protein
2442	 32.27	-2	2291295..2292701	-	468	78213993	-	Syncc9605_2485	-	hypothetical protein
2443	 37.27	-2	2293326..2293757	-	143	78213994	-	Syncc9605_2486	-	hypothetical protein
2444	 43.36	-2	2293935..2294393	-	152	78213995	-	Syncc9605_2487	-	hypothetical protein
2445	 43.30	-2	2294568..2294918	-	116	78213996	-	Syncc9605_2488	-	hypothetical protein
2446	 63.29	0	2295705..2296949	-	414	78213997	argJ	Syncc9605_2489	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2447	 62.98	0	2296964..2297587	+	207	78213998	-	Syncc9605_2490	-	dephospho-CoA kinase
2448	 57.01	0	2297694..2298221	+	175	78213999	-	Syncc9605_2491	-	hypothetical protein
2449	 58.91	0	2298392..2298958	+	188	78214000	-	Syncc9605_2492	-	hypothetical protein
2450	 58.73	0	2299129..2299695	+	188	78214001	-	Syncc9605_2493	-	hypothetical protein
2451	 47.08	-1	2299757..2300047	+	96	78214002	-	Syncc9605_2494	-	hypothetical protein
2452	 56.15	0	2300091..2300480	+	129	78214003	-	Syncc9605_2495	-	hypothetical protein
2453	 60.98	0	2300482..2301273	-	263	78214004	-	Syncc9605_2496	-	prolyl 4-hydroxylase, alpha subunit
2454	 60.27	0	2301273..2302757	-	494	78214005	gatB	Syncc9605_2497	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2455	 62.45	0	2302913..2303980	+	355	78214006	-	Syncc9605_2498	-	putative thiamine biosynthesis oxidoreductase
2456	 58.63	0	2304025..2304360	+	111	78214007	-	Syncc9605_2499	-	hypothetical protein
2457	 59.22	0	2304689..2307442	+	917	78214008	-	Syncc9605_2501	-	ATPase
2458	 56.24	0	2307439..2308560	+	373	78214009	-	Syncc9605_2502	-	hypothetical protein
2459	 56.42	0	2308560..2310707	+	715	78214010	-	Syncc9605_2503	-	ATPase
2460	 41.64	-2	2311073..2311867	+	264	78214011	-	Syncc9605_2504	-	hypothetical protein
2461	 42.35	-2	2311864..2313072	+	402	78214012	-	Syncc9605_2505	-	diaminopimelate decarboxylase
2462	 41.84	-2	2313085..2313660	+	191	78214013	-	Syncc9605_2506	-	acetyltransferase-like
2463	 42.67	-2	2314474..2315490	+	338	78214014	-	Syncc9605_2507	-	ThiF family protein
2464	 35.56	-2	2315589..2315993	-	134	78214015	-	Syncc9605_2508	-	hypothetical protein
2465	 32.34	-2	2315994..2316194	-	66	78214016	-	Syncc9605_2509	-	hypothetical protein
2466	 61.40	0	2317013..2317867	-	284	78214017	-	Syncc9605_2510	-	regulatory protein
2467	 61.40	0	2318506..2318961	-	151	78214018	-	Syncc9605_2512	-	nucleoside diphosphate kinase
2468	 60.86	0	2319084..2321012	+	642	78214019	-	Syncc9605_2513	-	arginine decarboxylase
2469	 59.05	0	2321003..2321698	-	231	78214020	-	Syncc9605_2514	-	Crp/FNR family transcriptional regulator
2470	 58.22	0	2321887..2323839	+	650	78214021	-	Syncc9605_2515	-	adenylyl cyclase class-3/4/guanylyl cyclase
2471	 56.13	0	2323863..2325704	+	613	78214022	-	Syncc9605_2516	-	hypothetical protein
2472	 47.20	-1	2326477..2327370	+	297	78214023	-	Syncc9605_2517	-	cyclic nucleotide-binding domain-containing protein
2473	 64.57	0	2327433..2330102	-	889	78214024	alaS	Syncc9605_2518	-	alanyl-tRNA synthetase
2474	 65.95	+1	2330128..2330544	+	138	78214025	-	Syncc9605_2519	-	hypothetical protein
2475	 65.48	0	2330541..2333738	+	1065	78214026	-	Syncc9605_2520	-	DEAD/DEAH box helicase-like
2476	 63.54	0	2334642..2335121	+	159	78214027	-	Syncc9605_2523	-	hypothetical protein
2477	 53.38	0	2335890..2339321	+	1143	78214028	-	Syncc9605_2524	-	VCBS
2478	 61.07	0	2339526..2339918	+	130	78214029	-	Syncc9605_2525	-	putative small heat shock protein
2479	 56.38	0	2340075..2341328	-	417	78214030	-	Syncc9605_2526	-	leukotoxin secretion protein
2480	 59.84	0	2341328..2344258	-	976	78214031	-	Syncc9605_2527	-	Type I secretion system ATPase, HlyB
2481	 59.92	0	2344255..2345040	-	261	78214032	-	Syncc9605_2528	-	hypothetical protein
2482	 62.50	0	2345136..2346431	-	431	78214033	-	Syncc9605_2529	-	putative putative integral membrane protein
2483	 63.12	0	2346514..2348262	+	582	78214034	-	Syncc9605_2530	-	flavoprotein
2484	 61.94	0	2348256..2349356	-	366	78214035	-	Syncc9605_2531	-	hypothetical protein
2485	 66.56	+1	2349413..2351206	+	597	78214036	-	Syncc9605_2532	-	putative flavoprotein
2486	 63.17	0	2351300..2352013	+	237	78214037	-	Syncc9605_2533	-	rubrerythrin
2487	 64.34	0	2352050..2352565	+	171	78214038	-	Syncc9605_2534	-	reductase
2488	 64.81	0	2352573..2353328	+	251	78214039	-	Syncc9605_2535	-	hypothetical protein
2489	 61.35	0	2353418..2353624	+	68	78214040	-	Syncc9605_2536	-	hypothetical protein
2490	 61.18	0	2353627..2353881	-	84	78214041	-	Syncc9605_2537	-	hypothetical protein
2491	 66.04	+1	2354011..2356893	-	960	78214042	-	Syncc9605_2538	-	glycine dehydrogenase
2492	 63.85	0	2356952..2357341	-	129	78214043	-	Syncc9605_2539	-	glycine cleavage system protein H
2493	 66.20	+1	2357352..2358644	-	430	78214044	-	Syncc9605_2540	-	hypothetical protein
2494	 64.36	0	2358792..2359703	+	303	78214045	-	Syncc9605_2541	-	Delta-9 acyl-phospholipid desaturase
2495	 59.69	0	2359782..2360240	+	152	78214046	rplI	Syncc9605_2542	-	50S ribosomal protein L9
2496	 63.68	0	2360312..2361718	+	468	78214047	-	Syncc9605_2543	-	primary replicative DNA helicase
2497	 61.39	0	2361804..2362106	+	100	78214048	-	Syncc9605_2544	-	hypothetical protein
2498	 65.27	0	2362180..2364111	+	643	78214049	-	Syncc9605_2545	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2499	 63.86	0	2364136..2364813	+	225	78214050	-	Syncc9605_2546	-	hypothetical protein
2500	 65.18	0	2364873..2365409	+	178	78214051	-	Syncc9605_2547	-	hypothetical protein
2501	 65.28	0	2365434..2365937	+	167	78214052	-	Syncc9605_2548	-	hypothetical protein
2502	 68.16	+1	2365934..2366467	-	177	78214053	-	Syncc9605_2549	-	hypothetical protein
2503	 68.23	+1	2366573..2367148	-	191	78214054	-	Syncc9605_2550	-	hypothetical protein
2504	 60.95	0	2367193..2367612	+	139	78214055	-	Syncc9605_2551	-	hypothetical protein
2505	 66.67	+1	2367605..2369647	+	680	78214056	ligA	Syncc9605_2552	-	NAD-dependent DNA ligase LigA
2506	 64.52	0	2369644..2369829	+	61	78214057	-	Syncc9605_2553	-	hypothetical protein
2507	 66.35	+1	2369805..2370428	-	207	78214058	-	Syncc9605_2554	-	hypothetical protein
2508	 62.61	0	2370463..2371251	-	262	78214059	-	Syncc9605_2555	-	membrane protein, multidrug efflux associated
2509	 63.78	0	2371251..2372048	-	265	78214060	-	Syncc9605_2556	-	putative multidrug efflux ABC transporter
2510	 66.15	+1	2372048..2373022	-	324	78214061	-	Syncc9605_2557	-	ATPase
2511	 65.32	0	2373027..2375771	-	914	78214062	valS	Syncc9605_2558	-	valyl-tRNA synthetase
2512	 54.84	0	2375860..2377110	+	416	78214063	-	Syncc9605_2559	-	ABC-type sugar transport system periplasmic component-like
2513	 60.92	0	2377107..2378429	+	440	78214064	-	Syncc9605_2560	-	small-conductance mechanosensitive channel-like
2514	 62.18	0	2378409..2379032	-	207	78214065	-	Syncc9605_2561	-	hypothetical protein
2515	 62.67	0	2379029..2379478	-	149	78214066	-	Syncc9605_2562	-	protein phosphatase 2A
2516	 61.24	0	2379533..2379790	+	85	78214067	-	Syncc9605_2563	-	hypothetical protein
2517	 66.34	+1	2379811..2380719	+	302	78214068	-	Syncc9605_2564	-	short-chain dehydrogenase/reductase
2518	 62.24	0	2380697..2382685	+	662	78214069	-	Syncc9605_2565	-	sigma-54 factor
2519	 62.77	0	2382690..2383100	+	136	78214070	-	Syncc9605_2566	-	ferric uptake regulator family protein
2520	 64.63	0	2383097..2383834	+	245	78214071	-	Syncc9605_2567	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.