IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2333	 57.66	0	2190202..2190534	+	110	78213884	-	Syncc9605_2376	-	hypothetical protein
2334	 63.95	0	2190551..2191213	+	220	78213885	-	Syncc9605_2377	-	ATPase
2335	 61.85	0	2191584..2192372	+	262	78213886	-	Syncc9605_2378	-	two component transcriptional regulator
2336	 65.19	0	2192388..2193332	-	314	78213887	-	Syncc9605_2379	-	DNA polymerase III subunit delta'
2337	 61.27	0	2193329..2193958	-	209	78213888	-	Syncc9605_2380	-	thymidylate kinase
2338	 65.67	0	2193955..2196273	-	772	78213889	-	Syncc9605_2381	-	heavy metal translocating P-type ATPase
2339	 59.58	0	2196368..2196889	+	173	78213890	-	Syncc9605_2382	-	photosystem I assembly protein Ycf3
2340	 65.52	0	2196891..2198288	-	465	78213891	-	Syncc9605_2383	-	DNA repair protein RadA
2341	 60.90	0	2198346..2199125	+	259	78213892	-	Syncc9605_2384	-	two component transcriptional regulator
2342	 63.48	0	2199106..2200425	+	439	78213893	-	Syncc9605_2385	-	putative glycerol-3-phosphate acyltransferase PlsX
2343	 64.22	0	2200453..2201472	+	339	161353759	-	Syncc9605_2386	-	3-oxoacyl-(acyl carrier protein) synthase III
2344	 66.33	+1	2201501..2202397	+	298	78213895	-	Syncc9605_2387	-	malonyl CoA-acyl carrier protein transacylase
2345	 68.65	+1	2202394..2203047	+	217	78213896	-	Syncc9605_2388	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2346	 67.53	+1	2203010..2203585	-	191	78213897	-	Syncc9605_2389	-	hypothetical protein
2347	 66.03	+1	2203585..2204208	-	207	78213898	-	Syncc9605_2390	-	hypothetical protein
2348	 62.30	0	2204205..2204456	-	83	78213899	-	Syncc9605_2391	-	hypothetical protein
2349	 65.91	+1	2204489..2205682	+	397	78213900	-	Syncc9605_2392	-	poly A polymerase family protein
2350	 62.96	0	2205744..2206175	+	143	78213901	-	Syncc9605_2393	-	RNA recognition motif-containing protein
2351	 61.83	0	2206247..2207155	-	302	78213902	-	Syncc9605_2394	-	phytoene synthase
2352	 59.27	0	2207159..2208577	-	472	78213903	-	Syncc9605_2395	-	zeta-carotene desaturase / three-step phytoene desaturase
2353	 60.15	0	2208615..2209013	+	132	78213904	-	Syncc9605_2396	-	NADH dehydrogenase I subunit M
2354	 65.57	0	2209010..2209645	+	211	78213905	-	Syncc9605_2397	-	hypothetical protein
2355	 62.22	0	2209636..2210625	-	329	78213906	-	Syncc9605_2398	-	putative Rubisco transcriptional regulator
2356	 62.16	0	2210707..2211438	+	243	78213907	-	Syncc9605_2399	-	hypothetical protein
2357	 62.89	0	2211473..2213482	+	669	78213908	-	Syncc9605_2400	-	NAD(P)H-quinone oxidoreductase subunit F
2358	 62.23	0	2213611..2215212	+	533	78213909	-	Syncc9605_2401	-	NAD(P)H-quinone oxidoreductase subunit 4
2359	 62.69	0	2215280..2215681	+	133	78213910	-	Syncc9605_2402	-	hypothetical protein
2360	 64.45	0	2215739..2216641	+	300	78213911	-	Syncc9605_2403	-	putative segregation and condensation protein A
2361	 57.51	0	2216688..2217866	+	392	78213912	-	Syncc9605_2404	-	putative sugar-phosphate nucleotidyl transferase
2362	 65.12	0	2217847..2218752	-	301	78213913	-	Syncc9605_2405	-	hypothetical protein
2363	 56.99	0	2218820..2219098	+	92	78213914	-	Syncc9605_2406	-	LuxR family transcriptional regulator
2364	 64.50	0	2219313..2219819	-	168	78213915	-	Syncc9605_2407	-	hypothetical protein
2365	 62.57	0	2219823..2220773	-	316	78213916	ppnK	Syncc9605_2408	-	inorganic polyphosphate/ATP-NAD kinase
2366	 58.18	0	2220792..2221121	-	109	78213917	-	Syncc9605_2409	-	NADH dehydrogenase subunit K
2367	 59.67	0	2221121..2221720	-	199	78213918	-	Syncc9605_2410	-	NADH dehydrogenase subunit J
2368	 58.95	0	2221717..2222364	-	215	78213919	-	Syncc9605_2411	-	NADH dehydrogenase subunit I
2369	 60.16	0	2222424..2223545	-	373	78213920	-	Syncc9605_2412	-	NADH dehydrogenase subunit H
2370	 63.99	0	2223570..2224763	-	397	78213921	-	Syncc9605_2413	-	methylcitrate synthase
2371	 63.60	0	2224774..2225262	-	162	78213922	-	Syncc9605_2414	-	phosphohistidine phosphatase, SixA
2372	 66.48	+1	2225240..2226856	-	538	78213923	-	Syncc9605_2415	-	hypothetical protein
2373	 61.62	0	2226874..2227230	+	118	78213924	-	Syncc9605_2416	-	rhodanese-like protein
2374	 66.36	+1	2227230..2228204	+	324	78213925	-	Syncc9605_2417	-	heat-inducible transcription repressor HrcA
2375	 65.00	0	2228215..2229471	-	418	78213926	-	Syncc9605_2418	-	tryptophan synthase subunit beta
2376	 63.30	0	2229571..2229897	+	108	78213927	-	Syncc9605_2419	-	translation initiation factor 1 (eIF-1/SUI1)
2377	 63.88	0	2229929..2230573	+	214	78213928	-	Syncc9605_2420	-	adenylylsulfate kinase
2378	 63.44	0	2230533..2231618	-	361	78213929	-	Syncc9605_2421	-	hypothetical protein
2379	 60.00	0	2231640..2232269	-	209	78213930	-	Syncc9605_2422	-	hypothetical protein
2380	 66.49	+1	2232269..2232820	-	183	78213931	-	Syncc9605_2423	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
2381	 68.43	+1	2232832..2234019	+	395	78213932	-	Syncc9605_2424	-	N-acetylglucosamine 6-phosphate deacetylase
2382	 62.18	0	2234047..2234760	+	237	78213933	-	Syncc9605_2425	-	Mg-protoporphyrin IX methyl transferase
2383	 64.03	0	2234724..2235671	-	315	78213934	-	Syncc9605_2426	-	pseudouridine synthase
2384	 66.12	+1	2235668..2236405	-	245	78213935	-	Syncc9605_2427	-	two component LuxR family transcriptional regulator
2385	 62.32	0	2236445..2236996	-	183	78213936	-	Syncc9605_2428	-	hypothetical protein
2386	 68.83	+1	2237080..2238144	+	354	78213937	-	Syncc9605_2429	-	NifS-like aminotransferase class-V
2387	 62.35	0	2238178..2238987	+	269	78213938	-	Syncc9605_2430	-	hypothetical protein
2388	 65.42	0	2238984..2239868	-	294	78213939	-	Syncc9605_2431	-	methyltransferase
2389	 62.11	0	2239923..2241107	+	394	78213940	-	Syncc9605_2432	-	NAD(P)H-quinone oxidoreductase subunit H
2390	 65.01	0	2241132..2241494	+	120	78213941	-	Syncc9605_2433	-	hypothetical protein
2391	 61.06	0	2241499..2242176	-	225	78213942	-	Syncc9605_2434	-	hypothetical protein
2392	 65.11	0	2242236..2242685	+	149	78213943	-	Syncc9605_2435	-	hypothetical protein
2393	 67.95	+1	2242656..2243822	-	388	78213944	-	Syncc9605_2436	-	O-succinylbenzoate--CoA ligase
2394	 69.97	+1	2243819..2244787	-	322	78213945	-	Syncc9605_2437	-	putative O-succinylbenzoate synthase
2395	 66.35	+1	2244784..2245728	-	314	78213946	-	Syncc9605_2438	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2396	 68.59	+1	2245799..2247205	+	468	78213947	-	Syncc9605_2439	-	isochorismate synthase
2397	 65.15	0	2247172..2248095	-	307	78213948	-	Syncc9605_2440	-	glutathione synthetase
2398	 64.34	0	2248099..2248356	-	85	78213949	-	Syncc9605_2441	-	glutaredoxin GrxC
2399	 61.34	0	2248492..2249562	+	356	78213950	prfB	Syncc9605_2442	-	peptide chain release factor 2
2400	 61.75	0	2249549..2249731	+	60	78213951	-	Syncc9605_2443	-	hypothetical protein
2401	 62.48	0	2249734..2250234	+	166	78213952	-	Syncc9605_2444	-	hypothetical protein
2402	 64.73	0	2250300..2250764	+	154	78213953	-	Syncc9605_2445	-	diacylglycerol kinase
2403	 64.48	0	2250779..2251372	+	197	78213954	-	Syncc9605_2446	-	anthranilate synthase, component II
2404	 59.20	0	2251387..2252457	+	356	78213955	-	Syncc9605_2447	-	hypothetical protein
2405	 66.67	+1	2252484..2253206	+	240	78213956	-	Syncc9605_2448	-	hypothetical protein
2406	 65.14	0	2253190..2254173	-	327	78213957	-	Syncc9605_2449	-	asparaginase
2407	 64.16	0	2254170..2255288	-	372	78213958	-	Syncc9605_2450	-	histidinol phosphate aminotransferase
2408	 64.75	0	2255285..2257057	-	590	78213959	argS	Syncc9605_2451	-	arginyl-tRNA synthetase
2409	 67.98	+1	2257101..2257940	-	279	78213960	-	Syncc9605_2452	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
2410	 70.07	+1	2257964..2259316	-	450	78213961	trmE	Syncc9605_2453	-	tRNA modification GTPase TrmE
2411	 66.21	+1	2259404..2259844	+	146	78213962	-	Syncc9605_2454	-	hypothetical protein
2412	 62.41	0	2259841..2262117	-	758	78213963	-	Syncc9605_2455	-	metal dependent phosphohydrolase
2413	 66.67	+1	2262195..2263835	+	546	78213964	-	Syncc9605_2456	-	ATPase
2414	 63.67	0	2263840..2264841	-	333	78213965	-	Syncc9605_2457	-	ribosomal large subunit pseudouridine synthase D
2415	 65.97	+1	2264838..2265704	-	288	78213966	rbgA	Syncc9605_2458	-	ribosomal biogenesis GTPase
2416	 64.76	0	2265823..2267028	+	401	78213967	pgk	Syncc9605_2459	-	phosphoglycerate kinase
2417	 61.25	0	2267037..2267405	-	122	78213968	-	Syncc9605_2460	-	hypothetical protein
2418	 64.30	0	2267475..2268362	+	295	78213969	-	Syncc9605_2461	-	3-hydroxyisobutyrate dehydrogenase
2419	 62.25	0	2268359..2269060	-	233	78213970	-	Syncc9605_2462	-	hypothetical protein
2420	 66.48	+1	2269155..2270231	+	358	78213971	-	Syncc9605_2463	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2421	 62.29	0	2270233..2271306	-	357	78213972	-	Syncc9605_2464	-	L-threonine O-3-phosphate decarboxylase
2422	 64.13	0	2271382..2272563	-	393	78213973	-	Syncc9605_2465	-	dihydroorotate dehydrogenase 2
2423	 62.85	0	2272572..2273330	-	252	78213974	-	Syncc9605_2466	-	RNase HI
2424	 64.88	0	2273382..2274110	+	242	78213975	-	Syncc9605_2467	-	hypothetical protein
2425	 59.49	0	2274384..2274773	-	129	78213976	rplL	Syncc9605_2468	-	50S ribosomal protein L7/L12
2426	 59.66	0	2274828..2275355	-	175	78213977	rplJ	Syncc9605_2469	-	50S ribosomal protein L10
2427	 61.16	0	2275593..2276300	-	235	78213978	rplA	Syncc9605_2470	-	50S ribosomal protein L1
2428	 59.39	0	2276372..2276797	-	141	78213979	rplK	Syncc9605_2471	-	50S ribosomal protein L11
2429	 62.03	0	2276907..2277575	-	222	78213980	nusG	Syncc9605_2472	-	transcription antitermination protein NusG
2430	 59.45	0	2277597..2277887	-	96	78213981	secE	Syncc9605_2473	-	preprotein translocase subunit SecE
2431	 64.32	0	2277910..2280684	-	924	78213982	-	Syncc9605_2474	-	ATPase
2432	 60.15	0	2280693..2281091	-	132	78213983	-	Syncc9605_2475	-	glyoxalase I
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.