IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2254	 45.50	-2	2103540..2103983	+	147	78213806	-	Syncc9605_2298	-	hypothetical protein
2255	 48.93	-1	2104033..2104923	-	296	78213807	-	Syncc9605_2299	-	hypothetical protein
2256	 45.98	-2	2104941..2105375	+	144	78213808	-	Syncc9605_2300	-	hypothetical protein
2257	 56.12	0	2105382..2105675	-	97	78213809	-	Syncc9605_2301	-	hypothetical protein
2258	 59.36	0	2105684..2109106	-	1140	78213810	-	Syncc9605_2302	-	hydrophobe/amphiphile efflux-1 HAE1
2259	 58.47	0	2109116..2110189	-	357	78213811	-	Syncc9605_2303	-	secretion protein HlyD
2260	 63.16	0	2110344..2112509	+	721	78213812	-	Syncc9605_2304	-	fused recombination factor protein RarA/unknown domain-containing protein
2261	 59.69	0	2112558..2113259	-	233	78213813	-	Syncc9605_2305	-	protein phosphatase 2C
2262	 58.59	0	2113744..2114040	-	98	78213814	-	Syncc9605_2306	-	hypothetical protein
2263	 56.20	0	2114094..2114561	+	155	78213815	-	Syncc9605_2307	-	putative bacterioferritin comigratory (BCP) protein
2264	 63.09	0	2114539..2115264	-	241	78213816	-	Syncc9605_2308	-	putative transcriptional regulators
2265	 60.64	0	2115265..2116011	-	248	78213817	-	Syncc9605_2309	-	phosphoadenosine phosphosulfate reductase
2266	 62.13	0	2116100..2117245	+	381	78213818	-	Syncc9605_2310	-	putative NADH dehydrogenase, transport associated
2267	 65.95	+1	2117242..2118918	+	558	78213819	-	Syncc9605_2311	-	putative GTP-binding protein, transporter associated
2268	 63.48	0	2118906..2120723	+	605	78213820	-	Syncc9605_2312	-	DASS family sodium/sulfate transporter
2269	 62.64	0	2120753..2122168	+	471	78213821	-	Syncc9605_2313	-	Trk family sodium transporter
2270	 63.97	0	2122193..2122897	+	234	78213822	-	Syncc9605_2314	-	VIC family potassium channel protein
2271	 67.54	+1	2122902..2124041	+	379	78213823	anmK	Syncc9605_2315	-	anhydro-N-acetylmuramic acid kinase
2272	 67.01	+1	2124038..2124331	-	97	78213824	-	Syncc9605_2316	-	hypothetical protein
2273	 67.00	+1	2124437..2124736	+	99	78213825	-	Syncc9605_2317	-	hypothetical protein
2274	 64.50	0	2124784..2125014	+	76	78213826	-	Syncc9605_2318	-	hypothetical protein
2275	 61.68	0	2125239..2126963	+	574	78213827	-	Syncc9605_2319	-	ATPase
2276	 64.58	0	2127278..2128333	-	351	78213828	-	Syncc9605_2320	-	PDZ/DHR/GLGF
2277	 62.50	0	2128859..2129242	+	127	78213829	-	Syncc9605_2321	-	hypothetical protein
2278	 65.19	0	2129466..2131970	+	834	78213830	-	Syncc9605_2322	-	ATP-dependent helicase HrpB
2279	 63.12	0	2132064..2132204	+	46	78213831	-	Syncc9605_2323	-	high light inducible protein
2280	 61.92	0	2132446..2133645	+	399	78213832	-	Syncc9605_2324	-	exodeoxyribonuclease VII large subunit
2281	 55.56	0	2133645..2133914	+	89	78213833	-	Syncc9605_2325	-	exodeoxyribonuclease VII small subunit
2282	 60.73	0	2133907..2134260	+	117	78213834	-	Syncc9605_2326	-	hypothetical protein
2283	 59.10	0	2134236..2134592	-	118	78213835	-	Syncc9605_2327	-	hypothetical protein
2284	 49.41	-1	2134640..2135572	-	310	78213836	-	Syncc9605_2328	-	serum resistance locus BrkB-like
2285	 58.59	0	2141664..2142455	-	263	78213837	-	Syncc9605_2329	-	inositol monophosphate family protein
2286	 56.81	0	2142461..2144245	-	594	78213838	-	Syncc9605_2330	-	RND family outer membrane efflux protein
2287	 61.37	0	2144270..2145667	-	465	78213839	-	Syncc9605_2331	-	Fe-S oxidoreductase
2288	 61.11	0	2145687..2146550	-	287	78213840	uppP	Syncc9605_2332	-	undecaprenyl pyrophosphate phosphatase
2289	 63.43	0	2146661..2147371	+	236	78213841	-	Syncc9605_2333	-	hypothetical protein
2290	 58.33	0	2147484..2147891	+	135	78213842	-	Syncc9605_2334	-	photosystem II complex extrinsic protein precursor U
2291	 66.00	+1	2147961..2149619	+	552	78213843	-	Syncc9605_2335	-	L-aspartate oxidase
2292	 63.44	0	2149633..2150562	-	309	78213844	-	Syncc9605_2336	-	thioredoxin domain-containing protein
2293	 63.83	0	2150648..2152024	+	458	78213845	-	Syncc9605_2337	-	hypothetical protein
2294	 60.00	0	2152021..2153250	+	409	78213846	-	Syncc9605_2338	-	putative multidrug efflux MFS transporter
2295	 62.66	0	2153352..2154575	+	407	78213847	-	Syncc9605_2339	-	putative multidrug efflux MFS transporter
2296	 54.84	0	2154568..2154660	-	30	109150031	petL	Syncc9605_2339a	-	cytochrome b6f complex subunit PetL
2297	 60.38	0	2154805..2156379	+	524	78213848	-	Syncc9605_2340	-	Elongator protein 3/MiaB/NifB
2298	 59.31	0	2156383..2156790	-	135	78213849	-	Syncc9605_2341	-	hypothetical protein
2299	 61.22	0	2156800..2157975	-	391	78213850	-	Syncc9605_2342	-	hypothetical protein
2300	 64.07	0	2158009..2158701	-	230	78213851	-	Syncc9605_2343	-	putative riboflavin-specific deaminase
2301	 62.87	0	2158713..2159633	-	306	78213852	-	Syncc9605_2344	-	6-pyruvoyltetrahydropterin synthase
2302	 62.50	0	2159661..2160260	+	199	78213853	aroK	Syncc9605_2345	-	shikimate kinase
2303	 59.85	0	2160263..2160526	-	87	78213854	-	Syncc9605_2346	-	hypothetical protein
2304	 63.94	0	2160543..2161202	+	219	78213855	-	Syncc9605_2347	-	hypothetical protein
2305	 62.89	0	2161168..2161908	-	246	78213856	-	Syncc9605_2348	-	putative glutathione S-transferase
2306	 61.84	0	2161953..2162159	+	68	78213857	-	Syncc9605_2349	-	hypothetical protein
2307	 63.12	0	2162159..2162581	+	140	78213858	-	Syncc9605_2350	-	ribosome-binding factor A
2308	 66.05	+1	2162562..2164178	+	538	78213859	-	Syncc9605_2351	-	putative beta-glucosidase
2309	 64.92	0	2164244..2165446	+	400	78213860	-	Syncc9605_2352	-	hypothetical protein
2310	 65.91	+1	2165443..2166240	+	265	78213861	-	Syncc9605_2353	-	uroporphyrinogen-III synthase
2311	 63.58	0	2166216..2166668	-	150	78213862	-	Syncc9605_2354	-	hypothetical protein
2312	 62.10	0	2166697..2167134	-	145	78213863	-	Syncc9605_2355	-	hypothetical protein
2313	 62.17	0	2167134..2168600	-	488	78213864	-	Syncc9605_2356	-	zeta-carotene desaturase
2314	 62.34	0	2168671..2169063	+	130	78213865	-	Syncc9605_2357	-	HesB/YadR/YfhF
2315	 61.47	0	2169110..2169532	+	140	78213866	-	Syncc9605_2358	-	hypothetical protein
2316	 64.70	0	2169751..2170920	+	389	78213867	-	Syncc9605_2359	-	hypothetical protein
2317	 62.27	0	2170917..2171189	+	90	78213868	-	Syncc9605_2360	-	hypothetical protein
2318	 63.33	0	2171137..2172066	-	309	78213869	-	Syncc9605_2361	-	hypothetical protein
2319	 62.75	0	2172149..2172403	+	84	78213870	-	Syncc9605_2362	-	hypothetical protein
2320	 66.23	+1	2172382..2174448	-	688	78213871	-	Syncc9605_2363	-	hypothetical protein
2321	 64.28	0	2174445..2175113	-	222	78213872	-	Syncc9605_2364	-	heat shock protein DnaJ-like
2322	 65.12	0	2175110..2176078	-	322	78213873	-	Syncc9605_2365	-	cysteine synthase
2323	 58.01	0	2176193..2177878	-	561	78213874	-	Syncc9605_2366	-	porin
2324	 58.15	0	2178101..2179603	-	500	78213875	-	Syncc9605_2367	-	porin
2325	 67.23	+1	2180036..2181631	+	531	78213876	-	Syncc9605_2368	-	hypothetical protein
2326	 62.42	0	2181655..2182785	+	376	78213877	-	Syncc9605_2369	-	putative glycosyl transferase
2327	 65.18	0	2182808..2184283	+	491	78213878	-	Syncc9605_2370	-	dolichyl-phosphate-mannose-protein mannosyltransferase
2328	 65.29	0	2184261..2185709	+	482	78213879	-	Syncc9605_2371	-	hypothetical protein
2329	 62.93	0	2185576..2187207	-	543	78213880	-	Syncc9605_2372	-	hypothetical protein
2330	 60.70	0	2187237..2188175	-	312	78213881	-	Syncc9605_2373	-	pectate lyase
2331	 59.70	0	2188341..2189000	+	219	78213882	-	Syncc9605_2374	-	hypothetical protein
2332	 60.42	0	2189051..2190106	-	351	78213883	-	Syncc9605_2375	-	photosystem II D2 protein (photosystem q(a) protein)
2333	 57.66	0	2190202..2190534	+	110	78213884	-	Syncc9605_2376	-	hypothetical protein
2334	 63.95	0	2190551..2191213	+	220	78213885	-	Syncc9605_2377	-	ATPase
2335	 61.85	0	2191584..2192372	+	262	78213886	-	Syncc9605_2378	-	two component transcriptional regulator
2336	 65.19	0	2192388..2193332	-	314	78213887	-	Syncc9605_2379	-	DNA polymerase III subunit delta'
2337	 61.27	0	2193329..2193958	-	209	78213888	-	Syncc9605_2380	-	thymidylate kinase
2338	 65.67	0	2193955..2196273	-	772	78213889	-	Syncc9605_2381	-	heavy metal translocating P-type ATPase
2339	 59.58	0	2196368..2196889	+	173	78213890	-	Syncc9605_2382	-	photosystem I assembly protein Ycf3
2340	 65.52	0	2196891..2198288	-	465	78213891	-	Syncc9605_2383	-	DNA repair protein RadA
2341	 60.90	0	2198346..2199125	+	259	78213892	-	Syncc9605_2384	-	two component transcriptional regulator
2342	 63.48	0	2199106..2200425	+	439	78213893	-	Syncc9605_2385	-	putative glycerol-3-phosphate acyltransferase PlsX
2343	 64.22	0	2200453..2201472	+	339	161353759	-	Syncc9605_2386	-	3-oxoacyl-(acyl carrier protein) synthase III
2344	 66.33	+1	2201501..2202397	+	298	78213895	-	Syncc9605_2387	-	malonyl CoA-acyl carrier protein transacylase
2345	 68.65	+1	2202394..2203047	+	217	78213896	-	Syncc9605_2388	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2346	 67.53	+1	2203010..2203585	-	191	78213897	-	Syncc9605_2389	-	hypothetical protein
2347	 66.03	+1	2203585..2204208	-	207	78213898	-	Syncc9605_2390	-	hypothetical protein
2348	 62.30	0	2204205..2204456	-	83	78213899	-	Syncc9605_2391	-	hypothetical protein
2349	 65.91	+1	2204489..2205682	+	397	78213900	-	Syncc9605_2392	-	poly A polymerase family protein
2350	 62.96	0	2205744..2206175	+	143	78213901	-	Syncc9605_2393	-	RNA recognition motif-containing protein
2351	 61.83	0	2206247..2207155	-	302	78213902	-	Syncc9605_2394	-	phytoene synthase
2352	 59.27	0	2207159..2208577	-	472	78213903	-	Syncc9605_2395	-	zeta-carotene desaturase / three-step phytoene desaturase
2353	 60.15	0	2208615..2209013	+	132	78213904	-	Syncc9605_2396	-	NADH dehydrogenase I subunit M
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.