IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2152	 57.38	0	2004470..2005018	-	182	78213704	-	Syncc9605_2189	-	F0F1 ATP synthase subunit delta
2153	 61.08	0	2005018..2005500	-	160	78213705	-	Syncc9605_2190	-	F0F1 ATP synthase subunit B
2154	 58.92	0	2005500..2005964	-	154	78213706	-	Syncc9605_2191	-	F0F1 ATP synthase subunit B'
2155	 67.07	+1	2006034..2006282	-	82	78213707	-	Syncc9605_2192	-	F0F1 ATP synthase subunit C
2156	 58.26	0	2006453..2007178	-	241	78213708	-	Syncc9605_2193	-	F0F1 ATP synthase subunit A
2157	 59.00	0	2007203..2007541	-	112	78213709	-	Syncc9605_2194	-	ATP synthase protein 1
2158	 62.84	0	2007588..2008790	-	400	78213710	-	Syncc9605_2195	-	hypothetical protein
2159	 61.21	0	2008904..2011855	+	983	78213711	-	Syncc9605_2196	-	anchor polypeptide LCM
2160	 61.73	0	2012265..2012750	+	161	78213712	-	Syncc9605_2197	-	allophycocyanin alpha chain
2161	 59.51	0	2012790..2013278	+	162	78213713	-	Syncc9605_2198	-	allophycocyanin, beta subunit
2162	 58.71	0	2013284..2013484	+	66	78213714	-	Syncc9605_2199	-	linker polypeptide, allophycocyanin-associated
2163	 61.46	0	2013541..2014347	-	268	78213715	-	Syncc9605_2200	-	hemolysin A
2164	 61.64	0	2014484..2014642	+	52	78213716	-	Syncc9605_2201	-	hypothetical protein
2165	 63.12	0	2014752..2015990	+	412	78213717	-	Syncc9605_2202	-	cell division protein FtsW
2166	 67.93	+1	2016045..2016758	+	237	78213718	-	Syncc9605_2203	-	putative c-type cytochrome biogenesis protein CcdA
2167	 66.67	+1	2016764..2018062	+	432	78213719	-	Syncc9605_2204	-	putative C-type cytochrome biogenesis protein Ccs1
2168	 61.03	0	2018050..2018439	-	129	78213720	-	Syncc9605_2205	-	7-cyano-7-deazaguanine reductase
2169	 58.70	0	2018565..2018903	+	112	78213721	-	Syncc9605_2206	-	nitrogen regulatory protein P-II
2170	 59.80	0	2018925..2019230	-	101	78213722	-	Syncc9605_2207	-	hypothetical protein
2171	 63.00	0	2019202..2019828	-	208	78213723	-	Syncc9605_2208	-	hypothetical protein
2172	 63.12	0	2019936..2021231	+	431	78213724	-	Syncc9605_2209	-	adenylosuccinate lyase
2173	 58.38	0	2021232..2022305	-	357	78213725	-	Syncc9605_2210	-	polysaccharide export outer membrane protein
2174	 58.57	0	2022570..2023508	+	312	78213726	-	Syncc9605_2211	-	hypothetical protein
2175	 55.44	0	2023554..2023838	+	94	78213727	-	Syncc9605_2212	-	acyl carrier protein
2176	 58.46	0	2023880..2025109	+	409	78213728	-	Syncc9605_2213	-	putative 3-oxoacyl-(acyl-carrier-protein) synthase I
2177	 42.63	-2	2025072..2025824	-	250	78213729	-	Syncc9605_2214	-	capsule polysaccharide protein KpsS-like
2178	 52.69	-1	2025856..2027808	-	650	78213730	-	Syncc9605_2215	-	capsule polysaccharide protein KpsS-like
2179	 66.15	+1	2027849..2029801	-	650	78213731	-	Syncc9605_2216	-	polysaccharide export protein
2180	 64.76	0	2029879..2030559	+	226	78213732	-	Syncc9605_2217	-	putative acylneuraminate cytidylyltransferase
2181	 61.31	0	2030586..2031893	+	435	78213733	-	Syncc9605_2218	-	hypothetical protein
2182	 63.56	0	2031890..2032918	+	342	78213734	-	Syncc9605_2219	-	hypothetical protein
2183	 63.11	0	2032915..2034234	+	439	78213735	-	Syncc9605_2220	-	hypothetical protein
2184	 60.76	0	2034274..2036559	+	761	78213736	-	Syncc9605_2221	-	N-acetylneuraminate synthase
2185	 54.23	0	2036742..2037473	+	243	78213737	-	Syncc9605_2222	-	hypothetical protein
2186	 52.51	-1	2037477..2038253	+	258	78213738	-	Syncc9605_2223	-	hypothetical protein
2187	 61.86	0	2038254..2038940	-	228	78213739	-	Syncc9605_2224	-	hypothetical protein
2188	 57.41	0	2039030..2039245	+	71	78213740	-	Syncc9605_2225	-	hypothetical protein
2189	 54.12	0	2039526..2040035	-	169	78213741	-	Syncc9605_2226	-	hypothetical protein
2190	 58.77	0	2040133..2040474	-	113	78213742	-	Syncc9605_2227	-	hypothetical protein
2191	 35.92	-2	2041159..2041584	+	141	78213743	-	Syncc9605_2228	-	hypothetical protein
2192	 51.37	-1	2042275..2042784	-	169	78213744	-	Syncc9605_2229	-	hypothetical protein
2193	 52.95	-1	2045128..2045856	+	242	78213745	-	Syncc9605_2230	-	hypothetical protein
2194	 59.84	0	2045981..2046346	-	121	78213746	-	Syncc9605_2231	-	hypothetical protein
2195	 46.62	-2	2046702..2047160	+	152	78213747	-	Syncc9605_2232	-	hypothetical protein
2196	 47.74	-1	2048779..2049021	+	80	78213748	-	Syncc9605_2235	-	hypothetical protein
2197	 43.64	-2	2049325..2049819	-	164	78213749	-	Syncc9605_2236	-	hypothetical protein
2198	 60.47	0	2050037..2050714	-	225	78213750	-	Syncc9605_2237	-	site-specific recombinase XerD-like
2199	 51.97	-1	2050892..2051170	+	92	78213751	-	Syncc9605_2238	-	hypothetical protein
2200	 38.69	-2	2051589..2052242	-	217	78213752	-	Syncc9605_2239	-	Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like
2201	 42.81	-2	2052247..2052816	-	189	78213753	-	Syncc9605_2240	-	hypothetical protein
2202	 42.56	-2	2053101..2053718	+	205	78213754	-	Syncc9605_2241	-	hypothetical protein
2203	 61.05	0	2054833..2055117	+	94	78213755	-	Syncc9605_2242	-	hypothetical protein
2204	 55.72	0	2055286..2056500	+	404	78213756	-	Syncc9605_2243	-	phage integrase family protein
2205	 53.75	0	2056987..2057226	+	79	78213757	-	Syncc9605_2244	-	hypothetical protein
2206	 55.33	0	2057274..2059169	+	631	78213758	-	Syncc9605_2245	-	hypothetical protein
2207	 53.33	0	2059169..2060023	+	284	78213759	-	Syncc9605_2246	-	hypothetical protein
2208	 39.17	-2	2060302..2061621	+	439	78213760	-	Syncc9605_2247	-	demethylmenaquinone methyltransferase-like
2209	 38.06	-2	2061661..2062569	+	302	78213761	-	Syncc9605_2248	-	hypothetical protein
2210	 56.76	0	2062753..2063085	-	110	78213762	-	Syncc9605_2249	-	hypothetical protein
2211	 63.25	0	2063650..2064792	+	380	78213763	-	Syncc9605_2250	-	putative RNA methylase
2212	 46.48	-2	2064774..2065541	-	255	78213764	-	Syncc9605_2251	-	hypothetical protein
2213	 61.24	0	2065697..2066083	-	128	78213765	-	Syncc9605_2252	-	hypothetical protein
2214	 61.70	0	2066083..2066505	-	140	78213766	-	Syncc9605_2253	-	hypothetical protein
2215	 62.75	0	2066565..2066921	+	118	78213767	-	Syncc9605_2254	-	hypothetical protein
2216	 66.67	+1	2066972..2070580	+	1202	78213768	-	Syncc9605_2255	-	condensin subunit Smc
2217	 63.90	0	2070671..2071756	+	361	78213769	-	Syncc9605_2256	-	hypothetical protein
2218	 61.44	0	2071782..2072183	-	133	78213770	-	Syncc9605_2257	-	methionine sulfoxide reductase B
2219	 67.21	+1	2072212..2073495	-	427	78213771	-	Syncc9605_2258	-	hypothetical protein
2220	 63.18	0	2073706..2075052	+	448	78213772	-	Syncc9605_2259	-	acetyl-CoA carboxylase biotin carboxylase subunit
2221	 63.64	0	2075055..2075384	-	109	78213773	-	Syncc9605_2260	-	hypothetical protein
2222	 60.16	0	2075465..2075587	+	40	78213774	-	Syncc9605_2261	-	photosystem II PsbX protein
2223	 66.45	+1	2075637..2076569	+	310	78213775	-	Syncc9605_2262	-	hypothetical protein
2224	 68.55	+1	2076575..2077105	+	176	78213776	-	Syncc9605_2263	-	hypothetical protein
2225	 67.51	+1	2077102..2077578	+	158	78213777	-	Syncc9605_2264	-	hypothetical protein
2226	 64.68	0	2077579..2077779	-	66	78213778	-	Syncc9605_2265	-	high light inducible protein
2227	 58.88	0	2077789..2079765	-	658	78213779	-	Syncc9605_2266	-	ATPase
2228	 64.04	0	2079821..2080162	-	113	78213780	-	Syncc9605_2267	-	HIT (histidine triad) family protein
2229	 61.33	0	2081492..2081641	-	49	78213781	-	Syncc9605_2271	-	hypothetical protein
2230	 62.38	0	2081722..2082351	-	209	78213782	-	Syncc9605_2272	-	hypothetical protein
2231	 60.10	0	2082402..2082599	-	65	78213783	-	Syncc9605_2273	-	hypothetical protein
2232	 60.89	0	2082603..2083208	-	201	78213784	def	Syncc9605_2274	-	peptide deformylase
2233	 66.88	+1	2083258..2085165	+	635	78213785	-	Syncc9605_2275	-	putative peptidase
2234	 64.06	0	2085162..2086736	-	524	78213786	-	Syncc9605_2276	-	putative protease
2235	 55.76	0	2086902..2087231	+	109	78213787	-	Syncc9605_2277	-	large-conductive mechanosensitive channel
2236	 62.07	0	2087432..2087605	+	57	78213788	-	Syncc9605_2278	-	hypothetical protein
2237	 62.30	0	2087612..2088892	-	426	78213789	-	Syncc9605_2279	-	cysteine desulfurase
2238	 65.82	+1	2088889..2090067	-	392	78213790	-	Syncc9605_2280	-	Iron-regulated ABC transporter permease protein SufD
2239	 60.46	0	2090070..2090858	-	262	78213791	-	Syncc9605_2281	-	FeS assembly ATPase SufC
2240	 58.54	0	2090901..2092340	-	479	78213792	-	Syncc9605_2282	-	cysteine desulfurase activator complex subunit SufB
2241	 60.22	0	2092346..2092702	-	118	78213793	-	Syncc9605_2283	-	ferredoxin thioredoxin reductase, catalytic beta chain
2242	 69.46	+1	2092861..2093505	+	214	78213794	-	Syncc9605_2284	-	transcriptional regulator
2243	 62.54	0	2093505..2093843	+	112	78213795	-	Syncc9605_2285	-	hypothetical protein
2244	 62.96	0	2093924..2094517	+	197	78213796	-	Syncc9605_2286	-	hypothetical protein
2245	 58.05	0	2094608..2095396	+	262	78213797	-	Syncc9605_2287	-	phycobilisome rod-core linker polypeptide cpcG (L-RC 28.5)
2246	 61.55	0	2095581..2096654	+	357	78213798	-	Syncc9605_2288	-	hypothetical protein
2247	 61.35	0	2096645..2096851	+	68	78213799	-	Syncc9605_2289	-	hypothetical protein
2248	 59.14	0	2096891..2097169	+	92	78213800	-	Syncc9605_2290	-	hypothetical protein
2249	 45.62	-2	2098482..2100377	+	631	78213801	-	Syncc9605_2293	-	hypothetical protein
2250	 52.69	-1	2100474..2100974	+	166	78213802	-	Syncc9605_2294	-	hypothetical protein
2251	 57.26	0	2100989..2101105	-	38	78213803	-	Syncc9605_2295	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.