IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2084	 64.25	0	1942875..1943783	-	302	78213636	-	Syncc9605_2121	-	hypothetical protein
2085	 67.97	+1	1943842..1945149	+	435	78213637	-	Syncc9605_2122	-	phosphoribosylamine--glycine ligase
2086	 63.23	0	1945146..1947212	+	688	78213638	-	Syncc9605_2123	-	multi-sensor signal transduction histidine kinase
2087	 60.10	0	1947214..1948752	-	512	78213639	-	Syncc9605_2124	-	circadian clock protein KaiC
2088	 56.83	0	1948818..1949183	-	121	78213640	-	Syncc9605_2125	-	circadian clock protein KaiB
2089	 60.68	0	1949180..1950064	-	294	78213641	-	Syncc9605_2126	-	circadian clock protein KaiA
2090	 59.29	0	1950197..1950562	+	121	78213642	rplU	Syncc9605_2127	-	50S ribosomal protein L21
2091	 60.30	0	1950607..1950873	+	88	78213643	rpmA	Syncc9605_2128	-	50S ribosomal protein L27
2092	 58.84	0	1950911..1951357	-	148	78213644	-	Syncc9605_2129	-	hypothetical protein
2093	 62.75	0	1951365..1952129	-	254	78213645	-	Syncc9605_2130	-	hypothetical protein
2094	 67.72	+1	1952132..1953079	+	315	78213646	-	Syncc9605_2131	-	tRNA pseudouridine synthase B
2095	 64.32	0	1953066..1953875	+	269	78213647	-	Syncc9605_2132	-	hypothetical protein
2096	 57.89	0	1954045..1954329	+	94	78213648	-	Syncc9605_2133	-	hypothetical protein
2097	 47.84	-1	1954331..1954654	-	107	78213649	-	Syncc9605_2134	-	hypothetical protein
2098	 49.65	-1	1954730..1955158	+	142	78213650	-	Syncc9605_2135	-	hypothetical protein
2099	 40.02	-2	1956203..1957519	-	438	78213651	-	Syncc9605_2136	-	hypothetical protein
2100	 51.39	-1	1957990..1958205	-	71	78213652	-	Syncc9605_2137	-	hypothetical protein
2101	 55.28	0	1958358..1958717	-	119	78213653	-	Syncc9605_2138	-	hypothetical protein
2102	 56.92	0	1958723..1960651	-	642	78213654	-	Syncc9605_2139	-	ATPase-like protein
2103	 58.42	0	1961621..1961923	-	100	78213655	-	Syncc9605_2140	-	phage integrase family protein
2104	 57.31	0	1962218..1962388	+	56	78213656	-	Syncc9605_2141	-	hypothetical protein
2105	 61.74	0	1962416..1962679	-	87	78213657	-	Syncc9605_2142	-	hypothetical protein
2106	 64.28	0	1962699..1963409	-	236	78213658	-	Syncc9605_2143	-	glucosamine-6-phosphate deaminase
2107	 67.34	+1	1963426..1964913	-	495	78213659	-	Syncc9605_2144	-	stage II sporulation protein D-like
2108	 64.90	0	1964919..1965878	+	319	78213660	-	Syncc9605_2145	-	RNAse Z
2109	 60.61	0	1965904..1966464	+	186	78213661	-	Syncc9605_2146	-	cytochrome c-550
2110	 63.27	0	1966479..1966979	-	166	78213662	-	Syncc9605_2147	-	hypothetical protein
2111	 60.00	0	1967001..1967300	-	99	78213663	-	Syncc9605_2148	-	ferredoxin (2Fe-2S)
2112	 66.89	+1	1967456..1968343	-	295	78213664	-	Syncc9605_2149	-	50S ribosomal protein L11P methyltransferase
2113	 62.76	0	1968343..1969929	-	528	78213665	-	Syncc9605_2150	-	D-3-phosphoglycerate dehydrogenase
2114	 65.07	0	1970037..1970537	+	166	78213666	-	Syncc9605_2151	-	hypothetical protein
2115	 64.86	0	1970537..1971313	+	258	78213667	-	Syncc9605_2152	-	RNA-binding S4
2116	 64.21	0	1971501..1972886	+	461	78213668	murD	Syncc9605_2153	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2117	 59.06	0	1972972..1973418	+	148	78213669	-	Syncc9605_2154	-	hypothetical protein
2118	 65.18	0	1973393..1974130	+	245	78213670	-	Syncc9605_2155	-	hypothetical protein
2119	 58.13	0	1974082..1974327	-	81	78213671	-	Syncc9605_2156	-	hypothetical protein
2120	 63.44	0	1974641..1975012	-	123	78213672	-	Syncc9605_2157	-	hypothetical protein
2121	 58.33	0	1975022..1975249	-	75	78213673	-	Syncc9605_2158	-	DNA-directed RNA polymerase subunit omega
2122	 61.75	0	1975292..1975576	-	94	78213674	-	Syncc9605_2159	-	hypothetical protein
2123	 66.29	+1	1975639..1977213	+	524	78213675	-	Syncc9605_2160	-	HSP70 family molecular chaperone
2124	 62.53	0	1977301..1978146	+	281	78213676	-	Syncc9605_2161	-	hypothetical protein
2125	 58.75	0	1978159..1978398	+	79	78213677	-	Syncc9605_2162	-	putative ferredoxin-thioredoxin reductase, variable chain
2126	 59.78	0	1978382..1978933	-	183	78213678	-	Syncc9605_2163	-	pyrimidine regulatory protein PyrR
2127	 59.40	0	1979042..1980679	+	545	78213679	-	Syncc9605_2164	-	phosphoglyceromutase
2128	 56.28	0	1980679..1980909	+	76	78213680	secG	Syncc9605_2165	-	preprotein translocase subunit SecG
2129	 41.54	-2	1981647..1982816	+	389	78213681	-	Syncc9605_2166	-	hypothetical protein
2130	 37.77	-2	1983034..1984452	+	472	78213682	-	Syncc9605_2167	-	hypothetical protein
2131	 49.00	-1	1984512..1984862	-	116	78213683	-	Syncc9605_2168	-	hypothetical protein
2132	 61.53	0	1985081..1986715	-	544	78213684	groEL	Syncc9605_2169	-	chaperonin GroEL
2133	 60.26	0	1986793..1987104	-	103	78213685	groES	Syncc9605_2170	-	co-chaperonin GroES
2134	 62.57	0	1987327..1988790	+	487	78213686	-	Syncc9605_2171	-	F0F1 ATP synthase subunit beta
2135	 59.61	0	1988865..1989275	+	136	78213687	atpC	Syncc9605_2172	-	F0F1 ATP synthase subunit epsilon
2136	 62.79	0	1989444..1989959	-	171	78213688	-	Syncc9605_2173	-	hypothetical protein
2137	 61.23	0	1990062..1990760	+	232	78213689	-	Syncc9605_2174	-	HAD family hydrolase
2138	 60.57	0	1990765..1991913	+	382	78213690	-	Syncc9605_2175	-	CaCA family calcium/proton exchanger
2139	 65.42	0	1991910..1993190	-	426	78213691	-	Syncc9605_2176	-	aminopeptidase P
2140	 66.67	+1	1993326..1994324	+	332	78213692	-	Syncc9605_2177	-	hypothetical protein
2141	 67.67	+1	1994321..1995616	+	431	78213693	-	Syncc9605_2178	-	small GTP-binding protein domain-containing protein
2142	 64.60	0	1995618..1996199	+	193	78213694	nadD	Syncc9605_2179	-	nicotinic acid mononucleotide adenylyltransferase
2143	 65.01	0	1996199..1997884	+	561	78213695	-	Syncc9605_2180	-	NH(3)-dependent NAD(+) synthetase
2144	 67.98	+1	1997957..1999096	+	379	78213696	-	Syncc9605_2181	-	L-alanine dehydrogenase
2145	 62.70	0	1999093..1999521	-	142	78213697	-	Syncc9605_2182	-	hypothetical protein
2146	 65.99	+1	1999521..2000558	-	345	78213698	-	Syncc9605_2183	-	hypothetical protein
2147	 60.75	0	2000570..2000755	-	61	78213699	-	Syncc9605_2184	-	hypothetical protein
2148	 60.91	0	2000752..2001081	-	109	78213700	-	Syncc9605_2185	-	ferredoxin (2Fe-2S)
2149	 60.40	0	2001114..2001863	-	249	78213701	-	Syncc9605_2186	-	hypothetical protein
2150	 58.68	0	2001928..2002878	-	316	78213702	-	Syncc9605_2187	-	F0F1 ATP synthase subunit gamma
2151	 61.01	0	2002892..2004412	-	506	78213703	-	Syncc9605_2188	-	F0F1 ATP synthase subunit alpha
2152	 57.38	0	2004470..2005018	-	182	78213704	-	Syncc9605_2189	-	F0F1 ATP synthase subunit delta
2153	 61.08	0	2005018..2005500	-	160	78213705	-	Syncc9605_2190	-	F0F1 ATP synthase subunit B
2154	 58.92	0	2005500..2005964	-	154	78213706	-	Syncc9605_2191	-	F0F1 ATP synthase subunit B'
2155	 67.07	+1	2006034..2006282	-	82	78213707	-	Syncc9605_2192	-	F0F1 ATP synthase subunit C
2156	 58.26	0	2006453..2007178	-	241	78213708	-	Syncc9605_2193	-	F0F1 ATP synthase subunit A
2157	 59.00	0	2007203..2007541	-	112	78213709	-	Syncc9605_2194	-	ATP synthase protein 1
2158	 62.84	0	2007588..2008790	-	400	78213710	-	Syncc9605_2195	-	hypothetical protein
2159	 61.21	0	2008904..2011855	+	983	78213711	-	Syncc9605_2196	-	anchor polypeptide LCM
2160	 61.73	0	2012265..2012750	+	161	78213712	-	Syncc9605_2197	-	allophycocyanin alpha chain
2161	 59.51	0	2012790..2013278	+	162	78213713	-	Syncc9605_2198	-	allophycocyanin, beta subunit
2162	 58.71	0	2013284..2013484	+	66	78213714	-	Syncc9605_2199	-	linker polypeptide, allophycocyanin-associated
2163	 61.46	0	2013541..2014347	-	268	78213715	-	Syncc9605_2200	-	hemolysin A
2164	 61.64	0	2014484..2014642	+	52	78213716	-	Syncc9605_2201	-	hypothetical protein
2165	 63.12	0	2014752..2015990	+	412	78213717	-	Syncc9605_2202	-	cell division protein FtsW
2166	 67.93	+1	2016045..2016758	+	237	78213718	-	Syncc9605_2203	-	putative c-type cytochrome biogenesis protein CcdA
2167	 66.67	+1	2016764..2018062	+	432	78213719	-	Syncc9605_2204	-	putative C-type cytochrome biogenesis protein Ccs1
2168	 61.03	0	2018050..2018439	-	129	78213720	-	Syncc9605_2205	-	7-cyano-7-deazaguanine reductase
2169	 58.70	0	2018565..2018903	+	112	78213721	-	Syncc9605_2206	-	nitrogen regulatory protein P-II
2170	 59.80	0	2018925..2019230	-	101	78213722	-	Syncc9605_2207	-	hypothetical protein
2171	 63.00	0	2019202..2019828	-	208	78213723	-	Syncc9605_2208	-	hypothetical protein
2172	 63.12	0	2019936..2021231	+	431	78213724	-	Syncc9605_2209	-	adenylosuccinate lyase
2173	 58.38	0	2021232..2022305	-	357	78213725	-	Syncc9605_2210	-	polysaccharide export outer membrane protein
2174	 58.57	0	2022570..2023508	+	312	78213726	-	Syncc9605_2211	-	hypothetical protein
2175	 55.44	0	2023554..2023838	+	94	78213727	-	Syncc9605_2212	-	acyl carrier protein
2176	 58.46	0	2023880..2025109	+	409	78213728	-	Syncc9605_2213	-	putative 3-oxoacyl-(acyl-carrier-protein) synthase I
2177	 42.63	-2	2025072..2025824	-	250	78213729	-	Syncc9605_2214	-	capsule polysaccharide protein KpsS-like
2178	 52.69	-1	2025856..2027808	-	650	78213730	-	Syncc9605_2215	-	capsule polysaccharide protein KpsS-like
2179	 66.15	+1	2027849..2029801	-	650	78213731	-	Syncc9605_2216	-	polysaccharide export protein
2180	 64.76	0	2029879..2030559	+	226	78213732	-	Syncc9605_2217	-	putative acylneuraminate cytidylyltransferase
2181	 61.31	0	2030586..2031893	+	435	78213733	-	Syncc9605_2218	-	hypothetical protein
2182	 63.56	0	2031890..2032918	+	342	78213734	-	Syncc9605_2219	-	hypothetical protein
2183	 63.11	0	2032915..2034234	+	439	78213735	-	Syncc9605_2220	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.