IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2049	 54.21	0	1909238..1910128	-	296	78213601	-	Syncc9605_2085	-	hypothetical protein
2050	 64.43	0	1910420..1911046	+	208	78213602	-	Syncc9605_2086	-	succinate dehydrogenase subunit C
2051	 64.74	0	1911043..1912962	+	639	78213603	sdhA	Syncc9605_2087	-	succinate dehydrogenase flavoprotein subunit
2052	 66.94	+1	1912959..1913687	+	242	78213604	-	Syncc9605_2088	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
2053	 50.90	-1	1913989..1914768	+	259	78213605	-	Syncc9605_2089	-	SPFH domain-containing protein/band 7 family protein
2054	 65.52	0	1914778..1915125	-	115	78213606	-	Syncc9605_2090	-	hypothetical protein
2055	 64.06	0	1915523..1916404	-	293	78213607	-	Syncc9605_2091	-	glutamyl-tRNA synthetase-like
2056	 57.61	0	1916472..1916747	-	91	78213608	-	Syncc9605_2092	-	nucleoid protein Hbs
2057	 64.24	0	1916881..1917540	-	219	78213609	-	Syncc9605_2093	-	hypothetical protein
2058	 64.10	0	1917582..1919687	+	701	78213610	-	Syncc9605_2094	-	alpha amylase domain-containing protein
2059	 66.82	+1	1919894..1921222	+	442	78213611	-	Syncc9605_2095	-	GPH family sugar transporter
2060	 65.47	0	1921219..1921968	+	249	78213612	-	Syncc9605_2096	-	hypothetical protein
2061	 63.62	0	1921965..1922390	+	141	78213613	-	Syncc9605_2097	-	hypothetical protein
2062	 68.92	+1	1922498..1923517	+	339	78213614	-	Syncc9605_2098	-	hypothetical protein
2063	 65.69	+1	1923514..1924125	+	203	78213615	-	Syncc9605_2099	-	acyl-phosphate glycerol-3-phosphate acyltransferase
2064	 68.32	+1	1924176..1924901	-	241	78213616	-	Syncc9605_2100	-	orotidine-5'-phosphate decarboxylase
2065	 50.79	-1	1924961..1925974	-	337	78213617	-	Syncc9605_2101	-	aminoglycoside phosphotransferase-like
2066	 65.38	0	1926025..1927272	-	415	78213618	-	Syncc9605_2102	-	tyrosyl-tRNA synthetase
2067	 57.58	0	1927333..1927662	-	109	78213619	-	Syncc9605_2103	-	hypothetical protein
2068	 65.53	0	1927864..1928565	+	233	78213620	-	Syncc9605_2104	-	two component LuxR family transcriptional regulator
2069	 59.37	0	1928609..1928923	+	104	78213621	-	Syncc9605_2105	-	hypothetical protein
2070	 68.77	+1	1928971..1929540	+	189	78213622	-	Syncc9605_2106	-	hypothetical protein
2071	 67.19	+1	1929540..1930112	+	190	78213623	-	Syncc9605_2107	-	hypothetical protein
2072	 66.05	+1	1930168..1931637	+	489	78213624	-	Syncc9605_2108	-	leucyl aminopeptidase
2073	 62.45	0	1931634..1931870	+	78	78213625	-	Syncc9605_2109	-	hypothetical protein
2074	 59.11	0	1932417..1932641	-	74	78213626	-	Syncc9605_2110	-	hypothetical protein
2075	 59.74	0	1932666..1932896	-	76	78213627	-	Syncc9605_2111	-	hypothetical protein
2076	 58.58	0	1932991..1933398	-	135	78213628	-	Syncc9605_2112	-	hypothetical protein
2077	 61.90	0	1935984..1936613	-	209	78213629	-	Syncc9605_2114	-	peptide methionine sulfoxide reductase
2078	 66.16	+1	1936610..1937791	-	393	78213630	lpxB	Syncc9605_2115	-	lipid-A-disaccharide synthase
2079	 64.48	0	1937791..1938615	-	274	78213631	-	Syncc9605_2116	-	UDP-N-acetylglucosamine acyltransferase
2080	 61.84	0	1938621..1939076	-	151	78213632	fabZ	Syncc9605_2117	-	(3R)-hydroxymyristoyl-ACP dehydratase
2081	 62.56	0	1939073..1939900	-	275	78213633	lpxC	Syncc9605_2118	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2082	 58.53	0	1939900..1942110	-	736	78213634	-	Syncc9605_2119	-	outer envelope membrane protein-like
2083	 60.16	0	1942126..1942878	-	250	78213635	-	Syncc9605_2120	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2084	 64.25	0	1942875..1943783	-	302	78213636	-	Syncc9605_2121	-	hypothetical protein
2085	 67.97	+1	1943842..1945149	+	435	78213637	-	Syncc9605_2122	-	phosphoribosylamine--glycine ligase
2086	 63.23	0	1945146..1947212	+	688	78213638	-	Syncc9605_2123	-	multi-sensor signal transduction histidine kinase
2087	 60.10	0	1947214..1948752	-	512	78213639	-	Syncc9605_2124	-	circadian clock protein KaiC
2088	 56.83	0	1948818..1949183	-	121	78213640	-	Syncc9605_2125	-	circadian clock protein KaiB
2089	 60.68	0	1949180..1950064	-	294	78213641	-	Syncc9605_2126	-	circadian clock protein KaiA
2090	 59.29	0	1950197..1950562	+	121	78213642	rplU	Syncc9605_2127	-	50S ribosomal protein L21
2091	 60.30	0	1950607..1950873	+	88	78213643	rpmA	Syncc9605_2128	-	50S ribosomal protein L27
2092	 58.84	0	1950911..1951357	-	148	78213644	-	Syncc9605_2129	-	hypothetical protein
2093	 62.75	0	1951365..1952129	-	254	78213645	-	Syncc9605_2130	-	hypothetical protein
2094	 67.72	+1	1952132..1953079	+	315	78213646	-	Syncc9605_2131	-	tRNA pseudouridine synthase B
2095	 64.32	0	1953066..1953875	+	269	78213647	-	Syncc9605_2132	-	hypothetical protein
2096	 57.89	0	1954045..1954329	+	94	78213648	-	Syncc9605_2133	-	hypothetical protein
2097	 47.84	-1	1954331..1954654	-	107	78213649	-	Syncc9605_2134	-	hypothetical protein
2098	 49.65	-1	1954730..1955158	+	142	78213650	-	Syncc9605_2135	-	hypothetical protein
2099	 40.02	-2	1956203..1957519	-	438	78213651	-	Syncc9605_2136	-	hypothetical protein
2100	 51.39	-1	1957990..1958205	-	71	78213652	-	Syncc9605_2137	-	hypothetical protein
2101	 55.28	0	1958358..1958717	-	119	78213653	-	Syncc9605_2138	-	hypothetical protein
2102	 56.92	0	1958723..1960651	-	642	78213654	-	Syncc9605_2139	-	ATPase-like protein
2103	 58.42	0	1961621..1961923	-	100	78213655	-	Syncc9605_2140	-	phage integrase family protein
2104	 57.31	0	1962218..1962388	+	56	78213656	-	Syncc9605_2141	-	hypothetical protein
2105	 61.74	0	1962416..1962679	-	87	78213657	-	Syncc9605_2142	-	hypothetical protein
2106	 64.28	0	1962699..1963409	-	236	78213658	-	Syncc9605_2143	-	glucosamine-6-phosphate deaminase
2107	 67.34	+1	1963426..1964913	-	495	78213659	-	Syncc9605_2144	-	stage II sporulation protein D-like
2108	 64.90	0	1964919..1965878	+	319	78213660	-	Syncc9605_2145	-	RNAse Z
2109	 60.61	0	1965904..1966464	+	186	78213661	-	Syncc9605_2146	-	cytochrome c-550
2110	 63.27	0	1966479..1966979	-	166	78213662	-	Syncc9605_2147	-	hypothetical protein
2111	 60.00	0	1967001..1967300	-	99	78213663	-	Syncc9605_2148	-	ferredoxin (2Fe-2S)
2112	 66.89	+1	1967456..1968343	-	295	78213664	-	Syncc9605_2149	-	50S ribosomal protein L11P methyltransferase
2113	 62.76	0	1968343..1969929	-	528	78213665	-	Syncc9605_2150	-	D-3-phosphoglycerate dehydrogenase
2114	 65.07	0	1970037..1970537	+	166	78213666	-	Syncc9605_2151	-	hypothetical protein
2115	 64.86	0	1970537..1971313	+	258	78213667	-	Syncc9605_2152	-	RNA-binding S4
2116	 64.21	0	1971501..1972886	+	461	78213668	murD	Syncc9605_2153	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2117	 59.06	0	1972972..1973418	+	148	78213669	-	Syncc9605_2154	-	hypothetical protein
2118	 65.18	0	1973393..1974130	+	245	78213670	-	Syncc9605_2155	-	hypothetical protein
2119	 58.13	0	1974082..1974327	-	81	78213671	-	Syncc9605_2156	-	hypothetical protein
2120	 63.44	0	1974641..1975012	-	123	78213672	-	Syncc9605_2157	-	hypothetical protein
2121	 58.33	0	1975022..1975249	-	75	78213673	-	Syncc9605_2158	-	DNA-directed RNA polymerase subunit omega
2122	 61.75	0	1975292..1975576	-	94	78213674	-	Syncc9605_2159	-	hypothetical protein
2123	 66.29	+1	1975639..1977213	+	524	78213675	-	Syncc9605_2160	-	HSP70 family molecular chaperone
2124	 62.53	0	1977301..1978146	+	281	78213676	-	Syncc9605_2161	-	hypothetical protein
2125	 58.75	0	1978159..1978398	+	79	78213677	-	Syncc9605_2162	-	putative ferredoxin-thioredoxin reductase, variable chain
2126	 59.78	0	1978382..1978933	-	183	78213678	-	Syncc9605_2163	-	pyrimidine regulatory protein PyrR
2127	 59.40	0	1979042..1980679	+	545	78213679	-	Syncc9605_2164	-	phosphoglyceromutase
2128	 56.28	0	1980679..1980909	+	76	78213680	secG	Syncc9605_2165	-	preprotein translocase subunit SecG
2129	 41.54	-2	1981647..1982816	+	389	78213681	-	Syncc9605_2166	-	hypothetical protein
2130	 37.77	-2	1983034..1984452	+	472	78213682	-	Syncc9605_2167	-	hypothetical protein
2131	 49.00	-1	1984512..1984862	-	116	78213683	-	Syncc9605_2168	-	hypothetical protein
2132	 61.53	0	1985081..1986715	-	544	78213684	groEL	Syncc9605_2169	-	chaperonin GroEL
2133	 60.26	0	1986793..1987104	-	103	78213685	groES	Syncc9605_2170	-	co-chaperonin GroES
2134	 62.57	0	1987327..1988790	+	487	78213686	-	Syncc9605_2171	-	F0F1 ATP synthase subunit beta
2135	 59.61	0	1988865..1989275	+	136	78213687	atpC	Syncc9605_2172	-	F0F1 ATP synthase subunit epsilon
2136	 62.79	0	1989444..1989959	-	171	78213688	-	Syncc9605_2173	-	hypothetical protein
2137	 61.23	0	1990062..1990760	+	232	78213689	-	Syncc9605_2174	-	HAD family hydrolase
2138	 60.57	0	1990765..1991913	+	382	78213690	-	Syncc9605_2175	-	CaCA family calcium/proton exchanger
2139	 65.42	0	1991910..1993190	-	426	78213691	-	Syncc9605_2176	-	aminopeptidase P
2140	 66.67	+1	1993326..1994324	+	332	78213692	-	Syncc9605_2177	-	hypothetical protein
2141	 67.67	+1	1994321..1995616	+	431	78213693	-	Syncc9605_2178	-	small GTP-binding protein domain-containing protein
2142	 64.60	0	1995618..1996199	+	193	78213694	nadD	Syncc9605_2179	-	nicotinic acid mononucleotide adenylyltransferase
2143	 65.01	0	1996199..1997884	+	561	78213695	-	Syncc9605_2180	-	NH(3)-dependent NAD(+) synthetase
2144	 67.98	+1	1997957..1999096	+	379	78213696	-	Syncc9605_2181	-	L-alanine dehydrogenase
2145	 62.70	0	1999093..1999521	-	142	78213697	-	Syncc9605_2182	-	hypothetical protein
2146	 65.99	+1	1999521..2000558	-	345	78213698	-	Syncc9605_2183	-	hypothetical protein
2147	 60.75	0	2000570..2000755	-	61	78213699	-	Syncc9605_2184	-	hypothetical protein
2148	 60.91	0	2000752..2001081	-	109	78213700	-	Syncc9605_2185	-	ferredoxin (2Fe-2S)
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.