IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2025	 57.14	0	1879273..1879398	-	41	78213577	-	Syncc9605_2061	-	hypothetical protein
2026	 65.53	0	1879429..1881183	-	584	78213578	-	Syncc9605_2062	-	sodium/solute symporter family protein glucose transporter
2027	 62.97	0	1881238..1882293	-	351	78213579	-	Syncc9605_2063	-	hypothetical protein
2028	 55.73	0	1882290..1882481	-	63	78213580	-	Syncc9605_2064	-	hypothetical protein
2029	 62.31	0	1882478..1886566	-	1362	78213581	-	Syncc9605_2065	-	DNA-directed RNA polymerase subunit beta'
2030	 60.68	0	1886614..1888518	-	634	78213582	-	Syncc9605_2066	-	DNA-directed RNA polymerase subunit gamma
2031	 61.90	0	1888567..1891860	-	1097	78213583	rpoB	Syncc9605_2067	-	DNA-directed RNA polymerase subunit beta
2032	 63.24	0	1892142..1892930	-	262	78213584	-	Syncc9605_2068	-	TatD-related deoxyribonuclease
2033	 61.95	0	1892979..1893275	-	98	78213585	rpsT	Syncc9605_2069	-	30S ribosomal protein S20
2034	 66.97	+1	1893384..1894691	+	435	78213586	-	Syncc9605_2070	-	histidinol dehydrogenase
2035	 61.53	0	1894684..1895403	-	239	78213587	-	Syncc9605_2071	-	ribose-5-phosphate isomerase
2036	 64.94	0	1895442..1896542	-	366	78213588	-	Syncc9605_2072	-	PDZ/DHR/GLGF
2037	 61.90	0	1896691..1897551	+	286	78213589	-	Syncc9605_2073	-	extracellular solute-binding protein
2038	 59.95	0	1897592..1897993	+	133	78213590	-	Syncc9605_2074	-	hypothetical protein
2039	 60.67	0	1897990..1899189	+	399	78213591	-	Syncc9605_2075	-	putative arylsulfatase regulatory protein
2040	 60.24	0	1899231..1899650	+	139	78213592	-	Syncc9605_2076	-	hypothetical protein
2041	 63.70	0	1899696..1899965	+	89	78213593	-	Syncc9605_2077	-	hypothetical protein
2042	 61.54	0	1900076..1900543	+	155	78213594	-	Syncc9605_2078	-	hypothetical protein
2043	 64.25	0	1900599..1902044	+	481	78213595	nusA	Syncc9605_2079	-	transcription elongation factor NusA
2044	 63.08	0	1902041..1902319	+	92	78213596	-	Syncc9605_2080	-	hypothetical protein
2045	 65.85	+1	1902389..1905703	+	1104	78213597	infB	Syncc9605_2081	-	translation initiation factor IF-2
2046	 60.57	0	1905718..1907193	+	491	78213598	-	Syncc9605_2082	-	ATPase
2047	 50.43	-1	1907457..1908146	+	229	78213599	-	Syncc9605_2083	-	hypothetical protein
2048	 55.96	0	1908147..1909136	-	329	78213600	-	Syncc9605_2084	-	hypothetical protein
2049	 54.21	0	1909238..1910128	-	296	78213601	-	Syncc9605_2085	-	hypothetical protein
2050	 64.43	0	1910420..1911046	+	208	78213602	-	Syncc9605_2086	-	succinate dehydrogenase subunit C
2051	 64.74	0	1911043..1912962	+	639	78213603	sdhA	Syncc9605_2087	-	succinate dehydrogenase flavoprotein subunit
2052	 66.94	+1	1912959..1913687	+	242	78213604	-	Syncc9605_2088	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
2053	 50.90	-1	1913989..1914768	+	259	78213605	-	Syncc9605_2089	-	SPFH domain-containing protein/band 7 family protein
2054	 65.52	0	1914778..1915125	-	115	78213606	-	Syncc9605_2090	-	hypothetical protein
2055	 64.06	0	1915523..1916404	-	293	78213607	-	Syncc9605_2091	-	glutamyl-tRNA synthetase-like
2056	 57.61	0	1916472..1916747	-	91	78213608	-	Syncc9605_2092	-	nucleoid protein Hbs
2057	 64.24	0	1916881..1917540	-	219	78213609	-	Syncc9605_2093	-	hypothetical protein
2058	 64.10	0	1917582..1919687	+	701	78213610	-	Syncc9605_2094	-	alpha amylase domain-containing protein
2059	 66.82	+1	1919894..1921222	+	442	78213611	-	Syncc9605_2095	-	GPH family sugar transporter
2060	 65.47	0	1921219..1921968	+	249	78213612	-	Syncc9605_2096	-	hypothetical protein
2061	 63.62	0	1921965..1922390	+	141	78213613	-	Syncc9605_2097	-	hypothetical protein
2062	 68.92	+1	1922498..1923517	+	339	78213614	-	Syncc9605_2098	-	hypothetical protein
2063	 65.69	+1	1923514..1924125	+	203	78213615	-	Syncc9605_2099	-	acyl-phosphate glycerol-3-phosphate acyltransferase
2064	 68.32	+1	1924176..1924901	-	241	78213616	-	Syncc9605_2100	-	orotidine-5'-phosphate decarboxylase
2065	 50.79	-1	1924961..1925974	-	337	78213617	-	Syncc9605_2101	-	aminoglycoside phosphotransferase-like
2066	 65.38	0	1926025..1927272	-	415	78213618	-	Syncc9605_2102	-	tyrosyl-tRNA synthetase
2067	 57.58	0	1927333..1927662	-	109	78213619	-	Syncc9605_2103	-	hypothetical protein
2068	 65.53	0	1927864..1928565	+	233	78213620	-	Syncc9605_2104	-	two component LuxR family transcriptional regulator
2069	 59.37	0	1928609..1928923	+	104	78213621	-	Syncc9605_2105	-	hypothetical protein
2070	 68.77	+1	1928971..1929540	+	189	78213622	-	Syncc9605_2106	-	hypothetical protein
2071	 67.19	+1	1929540..1930112	+	190	78213623	-	Syncc9605_2107	-	hypothetical protein
2072	 66.05	+1	1930168..1931637	+	489	78213624	-	Syncc9605_2108	-	leucyl aminopeptidase
2073	 62.45	0	1931634..1931870	+	78	78213625	-	Syncc9605_2109	-	hypothetical protein
2074	 59.11	0	1932417..1932641	-	74	78213626	-	Syncc9605_2110	-	hypothetical protein
2075	 59.74	0	1932666..1932896	-	76	78213627	-	Syncc9605_2111	-	hypothetical protein
2076	 58.58	0	1932991..1933398	-	135	78213628	-	Syncc9605_2112	-	hypothetical protein
2077	 61.90	0	1935984..1936613	-	209	78213629	-	Syncc9605_2114	-	peptide methionine sulfoxide reductase
2078	 66.16	+1	1936610..1937791	-	393	78213630	lpxB	Syncc9605_2115	-	lipid-A-disaccharide synthase
2079	 64.48	0	1937791..1938615	-	274	78213631	-	Syncc9605_2116	-	UDP-N-acetylglucosamine acyltransferase
2080	 61.84	0	1938621..1939076	-	151	78213632	fabZ	Syncc9605_2117	-	(3R)-hydroxymyristoyl-ACP dehydratase
2081	 62.56	0	1939073..1939900	-	275	78213633	lpxC	Syncc9605_2118	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2082	 58.53	0	1939900..1942110	-	736	78213634	-	Syncc9605_2119	-	outer envelope membrane protein-like
2083	 60.16	0	1942126..1942878	-	250	78213635	-	Syncc9605_2120	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2084	 64.25	0	1942875..1943783	-	302	78213636	-	Syncc9605_2121	-	hypothetical protein
2085	 67.97	+1	1943842..1945149	+	435	78213637	-	Syncc9605_2122	-	phosphoribosylamine--glycine ligase
2086	 63.23	0	1945146..1947212	+	688	78213638	-	Syncc9605_2123	-	multi-sensor signal transduction histidine kinase
2087	 60.10	0	1947214..1948752	-	512	78213639	-	Syncc9605_2124	-	circadian clock protein KaiC
2088	 56.83	0	1948818..1949183	-	121	78213640	-	Syncc9605_2125	-	circadian clock protein KaiB
2089	 60.68	0	1949180..1950064	-	294	78213641	-	Syncc9605_2126	-	circadian clock protein KaiA
2090	 59.29	0	1950197..1950562	+	121	78213642	rplU	Syncc9605_2127	-	50S ribosomal protein L21
2091	 60.30	0	1950607..1950873	+	88	78213643	rpmA	Syncc9605_2128	-	50S ribosomal protein L27
2092	 58.84	0	1950911..1951357	-	148	78213644	-	Syncc9605_2129	-	hypothetical protein
2093	 62.75	0	1951365..1952129	-	254	78213645	-	Syncc9605_2130	-	hypothetical protein
2094	 67.72	+1	1952132..1953079	+	315	78213646	-	Syncc9605_2131	-	tRNA pseudouridine synthase B
2095	 64.32	0	1953066..1953875	+	269	78213647	-	Syncc9605_2132	-	hypothetical protein
2096	 57.89	0	1954045..1954329	+	94	78213648	-	Syncc9605_2133	-	hypothetical protein
2097	 47.84	-1	1954331..1954654	-	107	78213649	-	Syncc9605_2134	-	hypothetical protein
2098	 49.65	-1	1954730..1955158	+	142	78213650	-	Syncc9605_2135	-	hypothetical protein
2099	 40.02	-2	1956203..1957519	-	438	78213651	-	Syncc9605_2136	-	hypothetical protein
2100	 51.39	-1	1957990..1958205	-	71	78213652	-	Syncc9605_2137	-	hypothetical protein
2101	 55.28	0	1958358..1958717	-	119	78213653	-	Syncc9605_2138	-	hypothetical protein
2102	 56.92	0	1958723..1960651	-	642	78213654	-	Syncc9605_2139	-	ATPase-like protein
2103	 58.42	0	1961621..1961923	-	100	78213655	-	Syncc9605_2140	-	phage integrase family protein
2104	 57.31	0	1962218..1962388	+	56	78213656	-	Syncc9605_2141	-	hypothetical protein
2105	 61.74	0	1962416..1962679	-	87	78213657	-	Syncc9605_2142	-	hypothetical protein
2106	 64.28	0	1962699..1963409	-	236	78213658	-	Syncc9605_2143	-	glucosamine-6-phosphate deaminase
2107	 67.34	+1	1963426..1964913	-	495	78213659	-	Syncc9605_2144	-	stage II sporulation protein D-like
2108	 64.90	0	1964919..1965878	+	319	78213660	-	Syncc9605_2145	-	RNAse Z
2109	 60.61	0	1965904..1966464	+	186	78213661	-	Syncc9605_2146	-	cytochrome c-550
2110	 63.27	0	1966479..1966979	-	166	78213662	-	Syncc9605_2147	-	hypothetical protein
2111	 60.00	0	1967001..1967300	-	99	78213663	-	Syncc9605_2148	-	ferredoxin (2Fe-2S)
2112	 66.89	+1	1967456..1968343	-	295	78213664	-	Syncc9605_2149	-	50S ribosomal protein L11P methyltransferase
2113	 62.76	0	1968343..1969929	-	528	78213665	-	Syncc9605_2150	-	D-3-phosphoglycerate dehydrogenase
2114	 65.07	0	1970037..1970537	+	166	78213666	-	Syncc9605_2151	-	hypothetical protein
2115	 64.86	0	1970537..1971313	+	258	78213667	-	Syncc9605_2152	-	RNA-binding S4
2116	 64.21	0	1971501..1972886	+	461	78213668	murD	Syncc9605_2153	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2117	 59.06	0	1972972..1973418	+	148	78213669	-	Syncc9605_2154	-	hypothetical protein
2118	 65.18	0	1973393..1974130	+	245	78213670	-	Syncc9605_2155	-	hypothetical protein
2119	 58.13	0	1974082..1974327	-	81	78213671	-	Syncc9605_2156	-	hypothetical protein
2120	 63.44	0	1974641..1975012	-	123	78213672	-	Syncc9605_2157	-	hypothetical protein
2121	 58.33	0	1975022..1975249	-	75	78213673	-	Syncc9605_2158	-	DNA-directed RNA polymerase subunit omega
2122	 61.75	0	1975292..1975576	-	94	78213674	-	Syncc9605_2159	-	hypothetical protein
2123	 66.29	+1	1975639..1977213	+	524	78213675	-	Syncc9605_2160	-	HSP70 family molecular chaperone
2124	 62.53	0	1977301..1978146	+	281	78213676	-	Syncc9605_2161	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.