IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1994	 65.67	0	1846747..1847748	+	333	78213546	-	Syncc9605_2030	-	dihydrouridine synthase TIM-barrel protein nifR3
1995	 62.42	0	1847745..1850756	+	1003	78213547	-	Syncc9605_2031	-	glycosyltransferase
1996	 61.02	0	1850765..1851703	+	312	78213548	-	Syncc9605_2032	-	glucose-1-phosphate thymidylyltransferase
1997	 59.28	0	1851693..1852274	+	193	78213549	-	Syncc9605_2033	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1998	 62.82	0	1852271..1853155	+	294	78213550	-	Syncc9605_2034	-	dTDP-4-dehydrorhamnose reductase
1999	 59.28	0	1853214..1854350	+	378	78213551	-	Syncc9605_2035	-	dTDP-glucose 4,6-dehydratase
2000	 47.55	-1	1854383..1857871	+	1162	78213552	-	Syncc9605_2036	-	lipopolysaccharide biosynthesis protein-like
2001	 46.07	-2	1858108..1859316	-	402	78213553	-	Syncc9605_2037	-	polysaccharide ABC transporter
2002	 40.21	-2	1859363..1860205	-	280	78213554	-	Syncc9605_2038	-	polysaccharide ABC transporter
2003	 42.62	-2	1860208..1860993	-	261	78213555	-	Syncc9605_2039	-	hypothetical protein
2004	 57.19	0	1861051..1861599	-	182	78213556	-	Syncc9605_2040	-	hypothetical protein
2005	 62.90	0	1861627..1863060	+	477	78213557	fumC	Syncc9605_2041	-	fumarate hydratase
2006	 63.89	0	1863063..1865837	-	924	78213558	-	Syncc9605_2042	-	DEAD/DEAH box helicase-like
2007	 64.20	0	1866082..1866324	+	80	78213559	-	Syncc9605_2043	-	hypothetical protein
2008	 58.73	0	1866451..1866702	-	83	78213560	-	Syncc9605_2044	-	hypothetical protein
2009	 58.18	0	1867932..1868096	-	54	78213561	-	Syncc9605_2045	-	hypothetical protein
2010	 47.53	-1	1868142..1868465	+	107	78213562	-	Syncc9605_2046	-	hypothetical protein
2011	 66.02	+1	1868715..1869647	-	310	78213563	-	Syncc9605_2047	-	sodium/bile acid cotransporter family protein
2012	 67.54	+1	1869702..1870841	+	379	78213564	-	Syncc9605_2048	-	8-amino-7-oxononanoate synthase
2013	 67.41	+1	1870856..1871527	+	223	78213565	-	Syncc9605_2049	-	hypothetical protein
2014	 65.62	0	1871509..1872273	+	254	78213566	-	Syncc9605_2050	-	biotin biosynthesis
2015	 63.48	0	1872270..1872929	+	219	78213567	-	Syncc9605_2051	-	dethiobiotin synthase
2016	 66.13	+1	1873378..1874676	+	432	78213568	-	Syncc9605_2052	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2017	 61.20	0	1874688..1874870	-	60	78213569	-	Syncc9605_2053	-	hypothetical protein
2018	 65.74	+1	1874902..1875441	-	179	78213570	-	Syncc9605_2054	-	heat shock protein DnaJ-like
2019	 67.62	+1	1875467..1876198	+	243	78213571	-	Syncc9605_2055	-	methyltransferase GidB
2020	 62.92	0	1876208..1877407	-	399	78213572	-	Syncc9605_2056	-	hypothetical protein
2021	 58.33	0	1877407..1877670	-	87	78213573	-	Syncc9605_2057	-	3Fe-4S ferredoxin
2022	 58.78	0	1877761..1878153	-	130	78213574	-	Syncc9605_2058	-	hypothetical protein
2023	 55.26	0	1878153..1878380	-	75	78213575	-	Syncc9605_2059	-	hypothetical protein
2024	 63.10	0	1878430..1879242	-	270	78213576	-	Syncc9605_2060	-	HEAT repeat-containing PBS lyase
2025	 57.14	0	1879273..1879398	-	41	78213577	-	Syncc9605_2061	-	hypothetical protein
2026	 65.53	0	1879429..1881183	-	584	78213578	-	Syncc9605_2062	-	sodium/solute symporter family protein glucose transporter
2027	 62.97	0	1881238..1882293	-	351	78213579	-	Syncc9605_2063	-	hypothetical protein
2028	 55.73	0	1882290..1882481	-	63	78213580	-	Syncc9605_2064	-	hypothetical protein
2029	 62.31	0	1882478..1886566	-	1362	78213581	-	Syncc9605_2065	-	DNA-directed RNA polymerase subunit beta'
2030	 60.68	0	1886614..1888518	-	634	78213582	-	Syncc9605_2066	-	DNA-directed RNA polymerase subunit gamma
2031	 61.90	0	1888567..1891860	-	1097	78213583	rpoB	Syncc9605_2067	-	DNA-directed RNA polymerase subunit beta
2032	 63.24	0	1892142..1892930	-	262	78213584	-	Syncc9605_2068	-	TatD-related deoxyribonuclease
2033	 61.95	0	1892979..1893275	-	98	78213585	rpsT	Syncc9605_2069	-	30S ribosomal protein S20
2034	 66.97	+1	1893384..1894691	+	435	78213586	-	Syncc9605_2070	-	histidinol dehydrogenase
2035	 61.53	0	1894684..1895403	-	239	78213587	-	Syncc9605_2071	-	ribose-5-phosphate isomerase
2036	 64.94	0	1895442..1896542	-	366	78213588	-	Syncc9605_2072	-	PDZ/DHR/GLGF
2037	 61.90	0	1896691..1897551	+	286	78213589	-	Syncc9605_2073	-	extracellular solute-binding protein
2038	 59.95	0	1897592..1897993	+	133	78213590	-	Syncc9605_2074	-	hypothetical protein
2039	 60.67	0	1897990..1899189	+	399	78213591	-	Syncc9605_2075	-	putative arylsulfatase regulatory protein
2040	 60.24	0	1899231..1899650	+	139	78213592	-	Syncc9605_2076	-	hypothetical protein
2041	 63.70	0	1899696..1899965	+	89	78213593	-	Syncc9605_2077	-	hypothetical protein
2042	 61.54	0	1900076..1900543	+	155	78213594	-	Syncc9605_2078	-	hypothetical protein
2043	 64.25	0	1900599..1902044	+	481	78213595	nusA	Syncc9605_2079	-	transcription elongation factor NusA
2044	 63.08	0	1902041..1902319	+	92	78213596	-	Syncc9605_2080	-	hypothetical protein
2045	 65.85	+1	1902389..1905703	+	1104	78213597	infB	Syncc9605_2081	-	translation initiation factor IF-2
2046	 60.57	0	1905718..1907193	+	491	78213598	-	Syncc9605_2082	-	ATPase
2047	 50.43	-1	1907457..1908146	+	229	78213599	-	Syncc9605_2083	-	hypothetical protein
2048	 55.96	0	1908147..1909136	-	329	78213600	-	Syncc9605_2084	-	hypothetical protein
2049	 54.21	0	1909238..1910128	-	296	78213601	-	Syncc9605_2085	-	hypothetical protein
2050	 64.43	0	1910420..1911046	+	208	78213602	-	Syncc9605_2086	-	succinate dehydrogenase subunit C
2051	 64.74	0	1911043..1912962	+	639	78213603	sdhA	Syncc9605_2087	-	succinate dehydrogenase flavoprotein subunit
2052	 66.94	+1	1912959..1913687	+	242	78213604	-	Syncc9605_2088	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
2053	 50.90	-1	1913989..1914768	+	259	78213605	-	Syncc9605_2089	-	SPFH domain-containing protein/band 7 family protein
2054	 65.52	0	1914778..1915125	-	115	78213606	-	Syncc9605_2090	-	hypothetical protein
2055	 64.06	0	1915523..1916404	-	293	78213607	-	Syncc9605_2091	-	glutamyl-tRNA synthetase-like
2056	 57.61	0	1916472..1916747	-	91	78213608	-	Syncc9605_2092	-	nucleoid protein Hbs
2057	 64.24	0	1916881..1917540	-	219	78213609	-	Syncc9605_2093	-	hypothetical protein
2058	 64.10	0	1917582..1919687	+	701	78213610	-	Syncc9605_2094	-	alpha amylase domain-containing protein
2059	 66.82	+1	1919894..1921222	+	442	78213611	-	Syncc9605_2095	-	GPH family sugar transporter
2060	 65.47	0	1921219..1921968	+	249	78213612	-	Syncc9605_2096	-	hypothetical protein
2061	 63.62	0	1921965..1922390	+	141	78213613	-	Syncc9605_2097	-	hypothetical protein
2062	 68.92	+1	1922498..1923517	+	339	78213614	-	Syncc9605_2098	-	hypothetical protein
2063	 65.69	+1	1923514..1924125	+	203	78213615	-	Syncc9605_2099	-	acyl-phosphate glycerol-3-phosphate acyltransferase
2064	 68.32	+1	1924176..1924901	-	241	78213616	-	Syncc9605_2100	-	orotidine-5'-phosphate decarboxylase
2065	 50.79	-1	1924961..1925974	-	337	78213617	-	Syncc9605_2101	-	aminoglycoside phosphotransferase-like
2066	 65.38	0	1926025..1927272	-	415	78213618	-	Syncc9605_2102	-	tyrosyl-tRNA synthetase
2067	 57.58	0	1927333..1927662	-	109	78213619	-	Syncc9605_2103	-	hypothetical protein
2068	 65.53	0	1927864..1928565	+	233	78213620	-	Syncc9605_2104	-	two component LuxR family transcriptional regulator
2069	 59.37	0	1928609..1928923	+	104	78213621	-	Syncc9605_2105	-	hypothetical protein
2070	 68.77	+1	1928971..1929540	+	189	78213622	-	Syncc9605_2106	-	hypothetical protein
2071	 67.19	+1	1929540..1930112	+	190	78213623	-	Syncc9605_2107	-	hypothetical protein
2072	 66.05	+1	1930168..1931637	+	489	78213624	-	Syncc9605_2108	-	leucyl aminopeptidase
2073	 62.45	0	1931634..1931870	+	78	78213625	-	Syncc9605_2109	-	hypothetical protein
2074	 59.11	0	1932417..1932641	-	74	78213626	-	Syncc9605_2110	-	hypothetical protein
2075	 59.74	0	1932666..1932896	-	76	78213627	-	Syncc9605_2111	-	hypothetical protein
2076	 58.58	0	1932991..1933398	-	135	78213628	-	Syncc9605_2112	-	hypothetical protein
2077	 61.90	0	1935984..1936613	-	209	78213629	-	Syncc9605_2114	-	peptide methionine sulfoxide reductase
2078	 66.16	+1	1936610..1937791	-	393	78213630	lpxB	Syncc9605_2115	-	lipid-A-disaccharide synthase
2079	 64.48	0	1937791..1938615	-	274	78213631	-	Syncc9605_2116	-	UDP-N-acetylglucosamine acyltransferase
2080	 61.84	0	1938621..1939076	-	151	78213632	fabZ	Syncc9605_2117	-	(3R)-hydroxymyristoyl-ACP dehydratase
2081	 62.56	0	1939073..1939900	-	275	78213633	lpxC	Syncc9605_2118	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2082	 58.53	0	1939900..1942110	-	736	78213634	-	Syncc9605_2119	-	outer envelope membrane protein-like
2083	 60.16	0	1942126..1942878	-	250	78213635	-	Syncc9605_2120	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2084	 64.25	0	1942875..1943783	-	302	78213636	-	Syncc9605_2121	-	hypothetical protein
2085	 67.97	+1	1943842..1945149	+	435	78213637	-	Syncc9605_2122	-	phosphoribosylamine--glycine ligase
2086	 63.23	0	1945146..1947212	+	688	78213638	-	Syncc9605_2123	-	multi-sensor signal transduction histidine kinase
2087	 60.10	0	1947214..1948752	-	512	78213639	-	Syncc9605_2124	-	circadian clock protein KaiC
2088	 56.83	0	1948818..1949183	-	121	78213640	-	Syncc9605_2125	-	circadian clock protein KaiB
2089	 60.68	0	1949180..1950064	-	294	78213641	-	Syncc9605_2126	-	circadian clock protein KaiA
2090	 59.29	0	1950197..1950562	+	121	78213642	rplU	Syncc9605_2127	-	50S ribosomal protein L21
2091	 60.30	0	1950607..1950873	+	88	78213643	rpmA	Syncc9605_2128	-	50S ribosomal protein L27
2092	 58.84	0	1950911..1951357	-	148	78213644	-	Syncc9605_2129	-	hypothetical protein
2093	 62.75	0	1951365..1952129	-	254	78213645	-	Syncc9605_2130	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.