IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1919	 64.30	0	1774079..1774501	+	140	78213473	-	Syncc9605_1956	-	SufE protein
1920	 64.76	0	1774589..1775896	+	435	78213474	-	Syncc9605_1957	-	homoserine dehydrogenase
1921	 58.62	0	1776060..1776233	+	57	78213475	-	Syncc9605_1958	-	hypothetical protein
1922	 64.30	0	1776274..1777881	+	535	78213476	-	Syncc9605_1959	-	ABC transporter substrate-binding protein
1923	 64.80	0	1777881..1778900	+	339	78213477	-	Syncc9605_1960	-	putative ABC transporter, oligopeptides
1924	 63.81	0	1778894..1780468	-	524	78213478	-	Syncc9605_1961	-	hypothetical protein
1925	 62.01	0	1780606..1781808	+	400	78213479	-	Syncc9605_1962	-	major facilitator superfamily multidrug-efflux transporter
1926	 43.99	-2	1782133..1782723	+	196	78213480	-	Syncc9605_1963	-	hypothetical protein
1927	 58.42	0	1782736..1783827	-	363	78213481	-	Syncc9605_1964	-	translation-associated GTPase
1928	 61.10	0	1783879..1785045	+	388	78213482	-	Syncc9605_1965	-	secretion protein HlyD
1929	 63.73	0	1785070..1788030	+	986	78213483	-	Syncc9605_1966	-	DNA polymerase I
1930	 62.28	0	1788077..1789558	+	493	78213484	-	Syncc9605_1967	-	cysteinyl-tRNA synthetase
1931	 57.61	0	1789579..1789821	+	80	78213485	-	Syncc9605_1968	-	hypothetical protein
1932	 64.77	0	1789843..1791162	-	439	78213486	-	Syncc9605_1969	-	sodium-dependent transporter
1933	 63.86	0	1791242..1792489	+	415	78213487	-	Syncc9605_1970	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1934	 52.07	-1	1792492..1792854	+	120	78213488	-	Syncc9605_1971	-	putative ferredoxin like protein
1935	 57.68	0	1793076..1794221	+	381	78213489	-	Syncc9605_1972	-	Delta(12)-fatty acid dehydrogenase
1936	 65.88	+1	1794257..1795276	-	339	78213490	-	Syncc9605_1973	-	hypothetical protein
1937	 63.22	0	1795288..1796709	-	473	78213491	-	Syncc9605_1974	-	putative nicotinamide nucleotide transhydrogenase, subunit beta
1938	 60.27	0	1796709..1797005	-	98	78213492	-	Syncc9605_1975	-	putative nicotinamide nucleotide transhydrogenase, subunit alpha 2 (A2)
1939	 64.14	0	1797005..1798153	-	382	78213493	-	Syncc9605_1976	-	NAD(P)(+) transhydrogenase (AB-specific)
1940	 62.00	0	1798270..1798848	+	192	78213494	-	Syncc9605_1977	-	hypothetical protein
1941	 61.02	0	1798882..1799058	-	58	78213495	-	Syncc9605_1978	-	hypothetical protein
1942	 64.45	0	1799305..1800612	+	435	78213496	-	Syncc9605_1979	-	hypothetical protein
1943	 55.87	0	1800643..1800957	+	104	78213497	-	Syncc9605_1980	-	hypothetical protein
1944	 61.53	0	1801065..1802447	+	460	78213498	-	Syncc9605_1981	-	thioredoxin reductase
1945	 65.19	0	1802460..1802729	-	89	78213499	-	Syncc9605_1982	-	translation initiation factor 1
1946	 62.77	0	1802886..1803578	+	230	78213500	-	Syncc9605_1983	-	pseudouridine synthase, Rsu
1947	 62.98	0	1803526..1804338	-	270	78213501	-	Syncc9605_1984	-	methyltransferase-like
1948	 61.57	0	1804338..1804553	-	71	78213502	-	Syncc9605_1985	-	hypothetical protein
1949	 60.85	0	1804607..1805569	-	320	78213503	-	Syncc9605_1986	-	putative chaperon-like protein for quinone binding in photosystem II
1950	 54.90	0	1805626..1805727	-	33	109150033	petM	Syncc9605_1986a	-	cytochrome b6-f complex subunit PetM
1951	 66.40	+1	1805756..1806886	-	376	78213504	-	Syncc9605_1987	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
1952	 68.74	+1	1806924..1807889	+	321	78213505	-	Syncc9605_1988	-	alpha/beta hydrolase superfamily protein
1953	 62.90	0	1807861..1808391	+	176	78213506	ilvH	Syncc9605_1989	-	acetolactate synthase 3 regulatory subunit
1954	 62.35	0	1808394..1809065	-	223	78213507	-	Syncc9605_1990	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1955	 61.68	0	1809070..1809630	-	186	78213508	-	Syncc9605_1991	-	photosystem I assembly protein Ycf4
1956	 60.23	0	1809795..1810850	+	351	78213509	-	Syncc9605_1992	-	photosystem II D2 protein (photosystem q(a) protein)
1957	 61.48	0	1810834..1812222	+	462	78213510	-	Syncc9605_1993	-	photosystem II 44 kDa subunit reaction center protein
1958	 64.13	0	1812332..1813474	+	380	78213511	-	Syncc9605_1994	-	cystathionine gamma-synthase
1959	 64.80	0	1813471..1814967	+	498	78213512	-	Syncc9605_1995	-	cystathionine gamma-synthase
1960	 61.70	0	1815022..1816008	+	328	78213513	-	Syncc9605_1996	-	cysteine synthase
1961	 50.37	-1	1816149..1816694	+	181	78213514	-	Syncc9605_1997	-	hypothetical protein
1962	 44.94	-2	1816751..1817353	+	200	78213515	-	Syncc9605_1998	-	hypothetical protein
1963	 47.04	-1	1817373..1819481	-	702	78213516	-	Syncc9605_1999	-	hypothetical protein
1964	 47.43	-1	1819491..1820015	-	174	78213517	-	Syncc9605_2000	-	hypothetical protein
1965	 50.12	-1	1820018..1822507	-	829	78213518	-	Syncc9605_2001	-	heavy metal translocating P-type ATPase
1966	 47.95	-1	1822558..1822899	-	113	78213519	-	Syncc9605_2002	-	hypothetical protein
1967	 40.09	-2	1822973..1824142	+	389	78213520	-	Syncc9605_2003	-	hypothetical protein
1968	 48.22	-1	1824441..1824749	-	102	78213521	-	Syncc9605_2004	-	hypothetical protein
1969	 40.72	-2	1824883..1825545	-	220	78213522	-	Syncc9605_2005	-	membrane protein-like
1970	 41.19	-2	1825549..1826961	-	470	78213523	-	Syncc9605_2006	-	hypothetical protein
1971	 53.24	0	1827095..1827742	+	215	78213524	-	Syncc9605_2007	-	carbonic anhydrase-like
1972	 62.13	0	1827727..1828827	-	366	78213525	-	Syncc9605_2008	-	queuosine biosynthesis protein
1973	 64.79	0	1828840..1830171	-	443	78213526	-	Syncc9605_2009	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1974	 60.86	0	1830228..1830692	-	154	78213527	-	Syncc9605_2010	-	hypothetical protein
1975	 65.88	+1	1830764..1832677	-	637	78213528	-	Syncc9605_2011	-	putative long-chain-fatty-acid--CoA ligase
1976	 64.66	0	1832706..1833404	-	232	78213529	-	Syncc9605_2012	-	lipoate-protein ligase B
1977	 61.90	0	1833416..1834003	+	195	78213530	-	Syncc9605_2013	-	sigma 54 modulation protein / SSU ribosomal protein S30P
1978	 66.67	+1	1834018..1834698	+	226	78213531	-	Syncc9605_2014	-	deoxyribose-phosphate aldolase
1979	 68.09	+1	1834699..1835472	+	257	78213532	-	Syncc9605_2015	-	DNA replication and repair protein RecO
1980	 64.20	0	1835501..1836880	+	459	78213533	-	Syncc9605_2016	-	MFS superfamily transporter
1981	 64.62	0	1836913..1838082	+	389	78213534	-	Syncc9605_2017	-	glycosyltransferase
1982	 64.35	0	1838091..1838609	-	172	78213535	-	Syncc9605_2018	-	hypothetical protein
1983	 57.71	0	1838986..1839264	+	92	78213536	-	Syncc9605_2019	-	hypothetical protein
1984	 65.75	+1	1839371..1839697	-	108	78213537	-	Syncc9605_2020	-	hypothetical protein
1985	 61.68	0	1839719..1840279	-	186	78213538	-	Syncc9605_2021	-	methionine salvage pathway enzyme E-2/E-2'-like
1986	 67.93	+1	1840348..1841058	+	236	78213539	-	Syncc9605_2022	-	cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase
1987	 64.82	0	1841055..1841867	-	270	78213540	-	Syncc9605_2023	-	pyrroline-5-carboxylate reductase
1988	 60.85	0	1841876..1842442	-	188	78213541	-	Syncc9605_2024	-	hypothetical protein
1989	 62.29	0	1842518..1843180	-	220	78213542	-	Syncc9605_2025	-	hypothetical protein
1990	 60.35	0	1843185..1843469	-	94	78213543	-	Syncc9605_2026	-	hypothetical protein
1991	 64.91	0	1843466..1844374	-	302	78213544	-	Syncc9605_2027	-	cobalt ABC transporter permease
1992	 61.62	0	1844378..1845745	-	455	78213545	engA	Syncc9605_2028	-	GTP-binding protein EngA
1993	 64.53	0	1846273..1846740	-	155	109150037	-	Syncc9605_2029a	-	hypothetical protein
1994	 65.67	0	1846747..1847748	+	333	78213546	-	Syncc9605_2030	-	dihydrouridine synthase TIM-barrel protein nifR3
1995	 62.42	0	1847745..1850756	+	1003	78213547	-	Syncc9605_2031	-	glycosyltransferase
1996	 61.02	0	1850765..1851703	+	312	78213548	-	Syncc9605_2032	-	glucose-1-phosphate thymidylyltransferase
1997	 59.28	0	1851693..1852274	+	193	78213549	-	Syncc9605_2033	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1998	 62.82	0	1852271..1853155	+	294	78213550	-	Syncc9605_2034	-	dTDP-4-dehydrorhamnose reductase
1999	 59.28	0	1853214..1854350	+	378	78213551	-	Syncc9605_2035	-	dTDP-glucose 4,6-dehydratase
2000	 47.55	-1	1854383..1857871	+	1162	78213552	-	Syncc9605_2036	-	lipopolysaccharide biosynthesis protein-like
2001	 46.07	-2	1858108..1859316	-	402	78213553	-	Syncc9605_2037	-	polysaccharide ABC transporter
2002	 40.21	-2	1859363..1860205	-	280	78213554	-	Syncc9605_2038	-	polysaccharide ABC transporter
2003	 42.62	-2	1860208..1860993	-	261	78213555	-	Syncc9605_2039	-	hypothetical protein
2004	 57.19	0	1861051..1861599	-	182	78213556	-	Syncc9605_2040	-	hypothetical protein
2005	 62.90	0	1861627..1863060	+	477	78213557	fumC	Syncc9605_2041	-	fumarate hydratase
2006	 63.89	0	1863063..1865837	-	924	78213558	-	Syncc9605_2042	-	DEAD/DEAH box helicase-like
2007	 64.20	0	1866082..1866324	+	80	78213559	-	Syncc9605_2043	-	hypothetical protein
2008	 58.73	0	1866451..1866702	-	83	78213560	-	Syncc9605_2044	-	hypothetical protein
2009	 58.18	0	1867932..1868096	-	54	78213561	-	Syncc9605_2045	-	hypothetical protein
2010	 47.53	-1	1868142..1868465	+	107	78213562	-	Syncc9605_2046	-	hypothetical protein
2011	 66.02	+1	1868715..1869647	-	310	78213563	-	Syncc9605_2047	-	sodium/bile acid cotransporter family protein
2012	 67.54	+1	1869702..1870841	+	379	78213564	-	Syncc9605_2048	-	8-amino-7-oxononanoate synthase
2013	 67.41	+1	1870856..1871527	+	223	78213565	-	Syncc9605_2049	-	hypothetical protein
2014	 65.62	0	1871509..1872273	+	254	78213566	-	Syncc9605_2050	-	biotin biosynthesis
2015	 63.48	0	1872270..1872929	+	219	78213567	-	Syncc9605_2051	-	dethiobiotin synthase
2016	 66.13	+1	1873378..1874676	+	432	78213568	-	Syncc9605_2052	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2017	 61.20	0	1874688..1874870	-	60	78213569	-	Syncc9605_2053	-	hypothetical protein
2018	 65.74	+1	1874902..1875441	-	179	78213570	-	Syncc9605_2054	-	heat shock protein DnaJ-like
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.