IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
146	 60.80	0	153255..155777	-	840	78211704	-	Syncc9605_0152	-	glycogen/starch/alpha-glucan phosphorylase
147	 59.33	0	155990..157366	+	458	78211705	-	Syncc9605_0153	-	CPA2 family Na+/H+ antiporter
148	 62.96	0	157369..157719	-	116	78211706	-	Syncc9605_0154	-	hypothetical protein
149	 62.98	0	157740..158660	+	306	78211707	-	Syncc9605_0155	-	hypothetical protein
150	 63.86	0	158678..159532	+	284	78211708	-	Syncc9605_0156	-	hypothetical protein
151	 67.45	+1	159517..160668	-	383	78211709	-	Syncc9605_0157	-	putative glycolate oxidase subunit GlcE
152	 66.15	+1	160683..162029	+	448	78211710	-	Syncc9605_0158	-	hypothetical protein
153	 66.16	+1	161928..163304	-	458	78211711	-	Syncc9605_0159	-	putative glycolate oxidase subunit (Fe-S) protein
154	 42.32	-2	163572..164294	-	240	78211712	-	Syncc9605_0160	-	hypothetical protein
155	 62.74	0	164316..165740	-	474	78211713	-	Syncc9605_0161	-	isocitrate dehydrogenase
156	 60.78	0	165823..166773	+	316	78211714	-	Syncc9605_0162	-	putative glycosyl transferase family protein
157	 64.06	0	166756..167943	-	395	78211715	-	Syncc9605_0163	-	hypothetical protein
158	 64.95	0	167961..168716	-	251	78211716	-	Syncc9605_0164	-	methylthioadenosine nucleosidase
159	 61.87	0	168821..169237	+	138	78211717	-	Syncc9605_0165	-	hypothetical protein
160	 57.98	0	169313..170026	+	237	78211718	-	Syncc9605_0166	-	Heme oxygenase (decyclizing)
161	 61.85	0	170043..171080	+	345	78211719	-	Syncc9605_0167	-	hypothetical protein
162	 46.44	-2	171147..172985	+	612	78211720	-	Syncc9605_0168	-	ATPase
163	 61.92	0	172985..175240	+	751	78211721	-	Syncc9605_0169	-	glycosyltransferase-like protein
164	 63.29	0	175237..176391	+	384	78211722	-	Syncc9605_0170	-	putative glycosyl transferase, group 1
165	 63.57	0	176384..177643	+	419	78211723	-	Syncc9605_0171	-	glycosyl transferase, group 1
166	 61.96	0	177640..178764	+	374	78211724	-	Syncc9605_0172	-	glycosyl transferase, group 1
167	 62.22	0	178761..179615	+	284	78211725	-	Syncc9605_0173	-	hypothetical protein
168	 59.33	0	179640..180470	-	276	78211726	-	Syncc9605_0174	-	hypothetical protein
169	 58.42	0	180495..181343	-	282	78211727	-	Syncc9605_0175	-	2-dehydro-3-deoxyphosphooctonate aldolase
170	 52.00	-1	181389..182213	-	274	78211728	-	Syncc9605_0176	-	hypothetical protein
171	 57.49	0	182241..183134	-	297	78211729	-	Syncc9605_0177	-	hypothetical protein
172	 62.15	0	183158..185548	+	796	78211730	-	Syncc9605_0178	-	ATP-dependent DNA helicase Rep
173	 60.06	0	185574..186284	+	236	78211731	-	Syncc9605_0179	-	hypothetical protein
174	 62.44	0	186284..187063	+	259	78211732	-	Syncc9605_0180	-	3-deoxy-manno-octulosonate cytidylyltransferase
175	 61.69	0	187138..189327	+	729	78211733	-	Syncc9605_0181	-	catalase/peroxidase HPI
176	 64.13	0	189341..189892	-	183	78211734	-	Syncc9605_0182	-	phosphatase kdsC
177	 62.82	0	189889..190902	-	337	78211735	-	Syncc9605_0183	-	KpsF/GutQ family protein
178	 65.92	+1	190921..192132	+	403	78211736	-	Syncc9605_0184	-	polyA polymerase
179	 63.72	0	192129..193553	+	474	78211737	-	Syncc9605_0185	-	hypothetical protein
180	 65.04	0	193498..195525	-	675	78211738	-	Syncc9605_0186	-	selenide,water dikinase
181	 64.25	0	195522..196556	-	344	78211739	-	Syncc9605_0187	-	UDP-galactose 4-epimerase
182	 62.33	0	196613..197950	+	445	78211740	hisS	Syncc9605_0188	-	histidyl-tRNA synthetase
183	 59.73	0	197953..198903	+	316	78211741	-	Syncc9605_0189	-	putative nucleoside-diphosphate sugar epimerase
184	 59.26	0	198900..200303	+	467	78211742	-	Syncc9605_0190	-	UDP-glucose 6-dehydrogenase
185	 53.63	0	200303..201322	+	339	78211743	-	Syncc9605_0191	-	putative nucleotide sugar epimerase
186	 37.60	-2	201515..201772	-	85	78211744	-	Syncc9605_0192	-	hypothetical protein
187	 39.65	-2	202312..204084	+	590	78211745	-	Syncc9605_0193	-	hypothetical protein
188	 34.89	-2	204725..207817	+	1030	78211746	-	Syncc9605_0194	-	lipopolysaccharide biosynthesis protein-like
189	 37.23	-2	208010..208291	+	93	78211747	-	Syncc9605_0195	-	hypothetical protein
190	 35.67	-2	208383..208682	+	99	78211748	-	Syncc9605_0196	-	hypothetical protein
191	 56.22	0	208764..208964	-	66	78211749	-	Syncc9605_0197	-	photosystem II reaction center protein J
192	 52.50	-1	208975..209094	-	39	78211750	-	Syncc9605_0198	-	photosystem II reaction center L
193	 59.57	0	209102..209242	-	46	78211751	-	Syncc9605_0199	-	cytochrome b559 subunit beta
194	 57.83	0	209246..209494	-	82	78211752	-	Syncc9605_0200	-	cytochrome b559 subunit alpha
195	 62.97	0	209566..210567	-	333	78211753	-	Syncc9605_0201	-	Ycf48-like protein
196	 58.10	0	210577..210996	-	139	78211754	-	Syncc9605_0202	-	rubredoxin
197	 55.92	0	211080..211442	+	120	78211755	-	Syncc9605_0203	-	NADH dehydrogenase subunit A
198	 59.38	0	211445..212185	+	246	78211756	-	Syncc9605_0204	-	NADH dehydrogenase subunit B
199	 55.91	0	212182..212748	+	188	78211757	-	Syncc9605_0205	-	NADH dehydrogenase subunit J
200	 62.98	0	212756..214111	-	451	78211758	-	Syncc9605_0206	-	hypothetical protein
201	 62.12	0	214273..215019	+	248	78211759	-	Syncc9605_0207	-	ATPase
202	 61.90	0	215025..215885	+	286	78211760	-	Syncc9605_0208	-	ABC transporter
203	 64.58	0	215936..218041	-	701	78211761	-	Syncc9605_0209	-	protoporphyrin IX magnesium-chelatase
204	 39.80	-2	218050..219456	-	468	78211762	-	Syncc9605_0210	-	hypothetical protein
205	 60.44	0	219542..220039	+	165	78211763	-	Syncc9605_0211	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
206	 65.60	0	220058..220618	+	186	78211764	-	Syncc9605_0212	-	NUDIX hydrolase
207	 63.67	0	220618..222051	+	477	78211765	-	Syncc9605_0213	-	deoxyribodipyrimidine photo-lyase type I
208	 62.88	0	222030..223271	-	413	78211766	-	Syncc9605_0214	-	putative pleiotropic regulatory protein
209	 63.42	0	223291..223875	-	194	78211767	-	Syncc9605_0215	-	hypothetical protein
210	 63.78	0	223933..224451	+	172	78211768	-	Syncc9605_0216	-	hypothetical protein
211	 63.72	0	224433..224873	-	146	78211769	-	Syncc9605_0217	-	hypothetical protein
212	 64.80	0	224889..225800	-	303	78211770	-	Syncc9605_0218	-	deoxyribodipyrimidine photo-lyase family protein
213	 62.40	0	225824..226666	+	280	78211771	-	Syncc9605_0219	-	enoyl-(acyl carrier protein) reductase
214	 62.89	0	226696..227304	+	202	78211772	hisB	Syncc9605_0220	-	imidazoleglycerol-phosphate dehydratase
215	 63.60	0	227365..228831	+	488	78211773	-	Syncc9605_0221	-	lignostilbene-alpha,beta-dioxygenase and related enzyme-like
216	 61.11	0	228919..229620	+	233	78211774	-	Syncc9605_0222	-	hypothetical protein
217	 64.48	0	229605..231161	-	518	78211775	-	Syncc9605_0223	-	BCCT family glycine betaine transporter
218	 65.58	0	231180..232370	-	396	78211776	-	Syncc9605_0224	-	putative sarcosine oxidase
219	 65.15	0	232367..233422	-	351	78211777	-	Syncc9605_0225	-	glutamate dehydrogenase/leucine dehydrogenase-like
220	 63.68	0	233422..234459	-	345	78211778	-	Syncc9605_0226	-	hypothetical protein
221	 65.29	0	234529..235110	-	193	78211779	-	Syncc9605_0227	-	Ham1-like protein
222	 66.12	+1	235107..236570	-	487	78211780	-	Syncc9605_0228	-	phosphoglucomutase/phosphomannomutase family protein
223	 66.33	+1	236624..238099	+	491	78211781	-	Syncc9605_0229	-	hypothetical protein
224	 62.52	0	238081..238875	-	264	78211782	-	Syncc9605_0230	-	hypothetical protein
225	 63.87	0	238872..239444	-	190	78211783	-	Syncc9605_0231	-	orotate phosphoribosyltransferase
226	 63.43	0	239477..240001	+	174	78211784	-	Syncc9605_0232	-	occludin/ELL family
227	 64.56	0	240099..241382	+	427	78211785	-	Syncc9605_0233	-	hypothetical protein
228	 62.50	0	241420..242427	+	335	78211786	-	Syncc9605_0234	-	oxidoreductase
229	 61.91	0	242443..245619	-	1058	78211787	-	Syncc9605_0235	-	putative phosphorylase kinase
230	 63.40	0	245667..246401	+	244	78211788	-	Syncc9605_0236	-	N-acetylmannosaminyltransferase
231	 60.78	0	246406..246558	-	50	78211789	-	Syncc9605_0237	-	photosystem II reaction center protein K
232	 64.43	0	246581..247699	-	372	78211790	-	Syncc9605_0238	-	queuine tRNA-ribosyltransferase
233	 66.54	+1	247729..248499	+	256	78211791	-	Syncc9605_0239	-	cobalamin-5'-phosphate synthase
234	 65.60	0	248459..249580	-	373	78211792	-	Syncc9605_0240	-	histidine kinase
235	 58.27	0	249918..250286	+	122	78211793	-	Syncc9605_0241	-	hypothetical protein
236	 61.43	0	250287..250859	-	190	78211794	-	Syncc9605_0242	-	esterase
237	 64.24	0	250916..252478	+	520	78211795	-	Syncc9605_0243	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
238	 61.44	0	252533..252991	+	152	78211796	-	Syncc9605_0244	-	hypothetical protein
239	 61.00	0	252999..253598	-	199	78211797	-	Syncc9605_0245	-	hypothetical protein
240	 59.08	0	253668..254867	-	399	78211798	-	Syncc9605_0246	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
241	 62.12	0	254978..256450	-	490	78211799	-	Syncc9605_0247	-	ammonium transporter
242	 64.18	0	256553..257317	-	254	78211800	-	Syncc9605_0248	-	sugar fermentation stimulation protein
243	 63.87	0	257386..258993	+	535	78211801	-	Syncc9605_0249	-	integral membrane protein MviN
244	 56.44	0	258980..259243	-	87	78211802	-	Syncc9605_0250	-	hypothetical protein
245	 62.20	0	259271..259561	-	96	78211803	-	Syncc9605_0251	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.