IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1825	 62.37	0	1692119..1692490	-	123	78213380	-	Syncc9605_1859	-	hypothetical protein
1826	 61.22	0	1692487..1693368	-	293	78213381	-	Syncc9605_1860	-	acetyl-CoA carboxylase subunit beta
1827	 62.46	0	1694209..1694493	-	94	78213382	-	Syncc9605_1863	-	hypothetical protein
1828	 57.48	0	1694561..1695463	-	300	78213383	-	Syncc9605_1864	-	phosphoribulokinase
1829	 63.78	0	1695528..1696601	-	357	78213384	-	Syncc9605_1865	-	3-isopropylmalate dehydrogenase
1830	 66.11	+1	1696634..1697710	-	358	78213385	-	Syncc9605_1866	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1831	 66.20	+1	1697713..1698786	-	357	78213386	-	Syncc9605_1867	-	gamma-glutamyl kinase
1832	 64.56	0	1698783..1699304	-	173	78213387	-	Syncc9605_1868	-	HAD family phosphatase
1833	 60.18	0	1699292..1699846	-	184	78213388	-	Syncc9605_1869	-	hypothetical protein
1834	 70.23	+1	1699867..1700343	-	158	78213389	-	Syncc9605_1870	-	Holliday junction resolvase YqgF
1835	 65.79	+1	1700343..1701374	-	343	78213390	-	Syncc9605_1871	-	hypothetical protein
1836	 66.93	+1	1701413..1702573	-	386	78213391	-	Syncc9605_1872	-	hypothetical protein
1837	 60.14	0	1702636..1703202	-	188	78213392	-	Syncc9605_1873	-	hypothetical protein
1838	 66.30	+1	1703218..1704837	-	539	78213393	-	Syncc9605_1874	-	hypothetical protein
1839	 62.28	0	1704882..1705337	-	151	78213394	-	Syncc9605_1875	-	ferric uptake regulator family protein
1840	 64.58	0	1705379..1706146	-	255	78213395	-	Syncc9605_1876	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1841	 65.12	0	1706233..1707138	+	301	78213396	-	Syncc9605_1877	-	nucleotide sugar epimerase
1842	 66.48	+1	1707107..1707643	-	178	78213397	-	Syncc9605_1878	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
1843	 62.87	0	1707675..1708148	+	157	78213398	-	Syncc9605_1879	-	CBS
1844	 58.56	0	1708120..1708452	+	110	78213399	-	Syncc9605_1880	-	hypothetical protein
1845	 56.40	0	1708433..1708948	+	171	78213400	-	Syncc9605_1881	-	hypothetical protein
1846	 52.56	-1	1709205..1709516	+	103	78213401	-	Syncc9605_1882	-	ferredoxin (2Fe-2S)
1847	 60.95	0	1710058..1710582	-	174	78213402	-	Syncc9605_1883	-	dCTP deaminase
1848	 53.83	0	1711277..1711720	+	147	78213403	-	Syncc9605_1884	-	hypothetical protein
1849	 51.63	-1	1711720..1712118	+	132	78213404	-	Syncc9605_1885	-	hypothetical protein
1850	 54.57	0	1712389..1712793	-	134	78213405	-	Syncc9605_1886	-	hypothetical protein
1851	 65.26	0	1712914..1713483	-	189	78213406	-	Syncc9605_1887	-	hypothetical protein
1852	 64.26	0	1713487..1714941	-	484	78213407	-	Syncc9605_1888	-	hypothetical protein
1853	 62.07	0	1714938..1715612	-	224	78213408	-	Syncc9605_1889	-	hypothetical protein
1854	 60.53	0	1715654..1715881	+	75	78213409	-	Syncc9605_1890	-	hypothetical protein
1855	 67.51	+1	1717059..1717295	-	78	78213410	-	Syncc9605_1893	-	hypothetical protein
1856	 65.19	0	1717381..1717989	+	202	78213411	-	Syncc9605_1894	-	hypothetical protein
1857	 65.56	0	1717967..1718236	+	89	78213412	-	Syncc9605_1895	-	hypothetical protein
1858	 61.85	0	1718233..1718730	+	165	78213413	-	Syncc9605_1896	-	hypothetical protein
1859	 59.20	0	1718721..1718921	-	66	78213414	-	Syncc9605_1897	-	hypothetical protein
1860	 64.52	0	1718965..1720500	-	511	78213415	-	Syncc9605_1898	-	hypothetical protein
1861	 64.07	0	1720545..1721084	+	179	78213416	-	Syncc9605_1899	-	hypothetical protein
1862	 63.66	0	1721101..1721832	-	243	78213417	-	Syncc9605_1900	-	hypothetical protein
1863	 59.60	0	1722357..1722653	-	98	78213418	-	Syncc9605_1901	-	hypothetical protein
1864	 42.37	-2	1723046..1724329	-	427	78213419	-	Syncc9605_1902	-	Na+/H+ antiporter NhaP
1865	 53.88	0	1725001..1725258	-	85	78213420	-	Syncc9605_1903	-	hypothetical protein
1866	 57.02	0	1725410..1725865	+	151	78213421	-	Syncc9605_1904	-	hypothetical protein
1867	 55.04	0	1726577..1727746	+	389	78213422	-	Syncc9605_1905	-	beta-lactamase class C and other penicillin binding proteins
1868	 59.84	0	1728207..1729670	+	487	78213423	-	Syncc9605_1906	-	amine oxidase (flavin-containing)
1869	 58.33	0	1730207..1730446	-	79	78213424	-	Syncc9605_1907	-	hypothetical protein
1870	 53.88	0	1730647..1731045	+	132	78213425	-	Syncc9605_1908	-	hypothetical protein
1871	 60.49	0	1731817..1732059	+	80	78213426	-	Syncc9605_1909	-	hypothetical protein
1872	 58.15	0	1732068..1732337	+	89	78213427	-	Syncc9605_1910	-	hypothetical protein
1873	 60.95	0	1732393..1732602	+	69	78213428	-	Syncc9605_1911	-	hypothetical protein
1874	 60.87	0	1732592..1735195	-	867	78213429	-	Syncc9605_1912	-	alanyl aminopeptidase
1875	 54.50	0	1735375..1735785	-	136	78213430	-	Syncc9605_1913	-	cAMP phosphodiesterase class-II
1876	 58.17	0	1735880..1736479	-	199	78213431	-	Syncc9605_1914	-	hypothetical protein
1877	 59.06	0	1736504..1737739	+	411	78213432	-	Syncc9605_1915	-	adaptive-response sensory kinase
1878	 57.28	0	1737986..1738507	-	173	78213433	-	Syncc9605_1916	-	hypothetical protein
1879	 59.36	0	1738669..1739859	+	396	78213434	-	Syncc9605_1917	-	ferredoxin--NADP reductase (FNR)
1880	 62.27	0	1740028..1741551	+	507	78213435	-	Syncc9605_1918	-	glucose-6-phosphate 1-dehydrogenase
1881	 65.97	+1	1741610..1742896	+	428	78213436	-	Syncc9605_1919	-	glucose 6-phosphate dehydrogenase effector OpcA
1882	 65.97	+1	1742911..1744338	+	475	78213437	-	Syncc9605_1920	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
1883	 69.05	+1	1744335..1744586	+	83	78213438	-	Syncc9605_1921	-	acylphosphatase
1884	 62.40	0	1744687..1745061	+	124	78213439	-	Syncc9605_1922	-	hypothetical protein
1885	 65.50	0	1745208..1745894	+	228	78213440	-	Syncc9605_1923	-	cytochrome c biogenesis protein trans
1886	 65.84	+1	1745896..1747347	-	483	78213441	-	Syncc9605_1924	-	exodeoxyribonuclease V
1887	 63.94	0	1747344..1747856	-	170	78213442	-	Syncc9605_1925	-	hypothetical protein
1888	 63.97	0	1747853..1748743	-	296	78213443	-	Syncc9605_1926	-	farnesyl-diphosphate synthase
1889	 62.98	0	1748784..1749461	-	225	78213444	-	Syncc9605_1927	-	hypothetical protein
1890	 65.53	0	1749470..1750351	-	293	78213445	-	Syncc9605_1928	-	methenyltetrahydrofolate cyclohydrolase
1891	 64.75	0	1750422..1752512	+	696	78213446	-	Syncc9605_1929	-	metal dependent phosphohydrolase
1892	 59.00	0	1752522..1752782	-	86	78213447	-	Syncc9605_1930	-	hypothetical protein
1893	 66.67	+1	1752766..1753353	-	195	78213448	-	Syncc9605_1931	-	ribosomal large subunit pseudouridine synthase A
1894	 61.76	0	1753380..1753868	-	162	78213449	-	Syncc9605_1932	-	hypothetical protein
1895	 64.03	0	1753950..1754252	-	100	78213450	-	Syncc9605_1933	-	hypothetical protein
1896	 63.05	0	1754252..1754500	-	82	78213451	-	Syncc9605_1934	-	hypothetical protein
1897	 61.07	0	1754591..1755037	+	148	78213452	-	Syncc9605_1935	-	hypothetical protein
1898	 60.95	0	1755108..1755317	+	69	78213453	-	Syncc9605_1936	-	hypothetical protein
1899	 60.98	0	1755360..1755605	-	81	78213454	-	Syncc9605_1937	-	hypothetical protein
1900	 62.42	0	1755919..1756743	-	274	78213455	-	Syncc9605_1938	-	putative permease protein of sugar ABC transporter
1901	 63.83	0	1756754..1758376	-	540	78213456	-	Syncc9605_1939	-	2-isopropylmalate synthase
1902	 66.10	+1	1758486..1760081	+	531	78213457	-	Syncc9605_1940	-	hypothetical protein
1903	 61.74	0	1760196..1761434	-	412	78213458	-	Syncc9605_1941	-	lycopene cyclase (CrtL-type)
1904	 64.36	0	1761437..1764034	-	865	78213459	-	Syncc9605_1942	-	DNA gyrase subunit A
1905	 65.56	0	1764126..1764668	+	180	78213460	-	Syncc9605_1943	-	hypothetical protein
1906	 65.64	0	1764732..1765895	+	387	78213461	-	Syncc9605_1944	-	inositol-5-monophosphate dehydrogenase
1907	 56.80	0	1766025..1766399	+	124	78213462	-	Syncc9605_1945	-	thioredoxin
1908	 62.31	0	1766426..1767067	+	213	78213463	-	Syncc9605_1946	-	imidazole glycerol phosphate synthase subunit hisH
1909	 63.61	0	1767064..1767684	+	206	78213464	-	Syncc9605_1947	-	hypothetical protein
1910	 59.83	0	1767614..1767730	-	38	109150035	petG	Syncc9605_1947a	-	cytochrome b6-f complex subunit PetG
1911	 63.77	0	1767787..1768200	+	137	78213465	-	Syncc9605_1948	-	cytochrome cM
1912	 67.76	+1	1768225..1768956	+	243	78213466	-	Syncc9605_1949	-	RNA methyltransferase TrmH, group 1
1913	 64.31	0	1768985..1770130	+	381	78213467	-	Syncc9605_1950	-	beta-lactamase family protein
1914	 66.30	+1	1770127..1771479	+	450	78213468	-	Syncc9605_1951	-	hypothetical protein
1915	 65.56	0	1771500..1772588	+	362	78213469	-	Syncc9605_1952	-	protoporphyrin IX magnesium-chelatase
1916	 63.23	0	1772607..1773071	+	154	78213470	-	Syncc9605_1953	-	Holliday junction endonuclease RuvC
1917	 67.76	+1	1773068..1773616	+	182	78213471	-	Syncc9605_1954	-	hypothetical protein
1918	 61.26	0	1773628..1774071	+	147	78213472	-	Syncc9605_1955	-	hypothetical protein
1919	 64.30	0	1774079..1774501	+	140	78213473	-	Syncc9605_1956	-	SufE protein
1920	 64.76	0	1774589..1775896	+	435	78213474	-	Syncc9605_1957	-	homoserine dehydrogenase
1921	 58.62	0	1776060..1776233	+	57	78213475	-	Syncc9605_1958	-	hypothetical protein
1922	 64.30	0	1776274..1777881	+	535	78213476	-	Syncc9605_1959	-	ABC transporter substrate-binding protein
1923	 64.80	0	1777881..1778900	+	339	78213477	-	Syncc9605_1960	-	putative ABC transporter, oligopeptides
1924	 63.81	0	1778894..1780468	-	524	78213478	-	Syncc9605_1961	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.