IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1784	 59.75	0	1656033..1656668	-	211	78213339	-	Syncc9605_1818	-	hypothetical protein
1785	 61.64	0	1656773..1660096	+	1107	78213340	carB	Syncc9605_1819	-	carbamoyl phosphate synthase large subunit
1786	 60.96	0	1660132..1660797	+	221	78213341	-	Syncc9605_1820	-	hypothetical protein
1787	 60.40	0	1660803..1662206	+	467	78213342	-	Syncc9605_1821	-	amino acid carrier protein
1788	 59.74	0	1662268..1662498	-	76	78213343	-	Syncc9605_1822	-	hypothetical protein
1789	 61.63	0	1662548..1664293	-	581	78213344	-	Syncc9605_1823	-	ATPase
1790	 57.21	0	1664309..1664530	+	73	78213345	-	Syncc9605_1824	-	RNA-binding S4
1791	 59.71	0	1664548..1665294	+	248	78213346	tpiA	Syncc9605_1825	-	triosephosphate isomerase
1792	 64.54	0	1665272..1666117	+	281	78213347	-	Syncc9605_1826	-	dihydropteroate synthase
1793	 55.49	0	1666114..1667097	+	327	78213348	-	Syncc9605_1827	-	hypothetical protein
1794	 59.84	0	1667168..1671193	-	1341	78213349	-	Syncc9605_1828	-	magnesium chelatase
1795	 64.51	0	1671311..1672144	+	277	78213350	-	Syncc9605_1829	-	dihydrodipicolinate reductase
1796	 64.69	0	1672155..1672811	+	218	78213351	-	Syncc9605_1830	-	hypothetical protein
1797	 65.48	0	1672876..1673127	+	83	78213352	-	Syncc9605_1831	-	high light inducible protein
1798	 64.40	0	1673169..1674314	+	381	78213353	-	Syncc9605_1832	-	2-octaprenyl-6-methoxyphenol 4-monoxygenase UbiH
1799	 59.62	0	1674335..1674547	+	70	78213354	-	Syncc9605_1833	-	hypothetical protein
1800	 62.62	0	1674538..1675056	-	172	78213355	-	Syncc9605_1834	-	adenine phosphoribosyltransferase
1801	 64.85	0	1675100..1675648	+	182	78213356	-	Syncc9605_1835	-	hypothetical protein
1802	 61.79	0	1675656..1676270	+	204	78213357	-	Syncc9605_1836	-	hypothetical protein
1803	 60.98	0	1676330..1676698	+	122	78213358	-	Syncc9605_1837	-	hypothetical protein
1804	 59.16	0	1676695..1677147	-	150	78213359	-	Syncc9605_1838	-	hypothetical protein
1805	 61.85	0	1677242..1678009	+	255	78213360	-	Syncc9605_1839	-	two component transcriptional regulator
1806	 62.22	0	1678011..1679336	+	441	78213361	-	Syncc9605_1840	-	periplasmic sensor signal transduction histidine kinase
1807	 53.50	0	1679363..1680319	+	318	78213362	-	Syncc9605_1841	-	hypothetical protein
1808	 46.79	-2	1680439..1680750	-	103	78213363	-	Syncc9605_1842	-	hypothetical protein
1809	 57.28	0	1680913..1681125	+	70	78213364	-	Syncc9605_1843	-	hypothetical protein
1810	 55.28	0	1681291..1681536	-	81	78213365	-	Syncc9605_1844	-	hypothetical protein
1811	 59.71	0	1681651..1682901	-	416	78213366	-	Syncc9605_1845	-	major facilitator superfamily multidrug-efflux transporter
1812	 60.02	0	1682898..1683920	-	340	78213367	-	Syncc9605_1846	-	glyceraldehyde-3-phosphate dehydrogenase
1813	 62.89	0	1683981..1684298	+	105	78213368	-	Syncc9605_1847	-	ArsR family transcriptional regulator
1814	 58.90	0	1684301..1684918	+	205	78213369	-	Syncc9605_1848	-	hypothetical protein
1815	 42.52	-2	1684974..1685996	+	340	78213370	-	Syncc9605_1849	-	small mechanosensitive ion channel
1816	 57.78	0	1685957..1686271	-	104	78213371	-	Syncc9605_1850	-	hypothetical protein
1817	 63.95	0	1686310..1686714	-	134	78213372	-	Syncc9605_1851	-	hypothetical protein
1818	 63.92	0	1686770..1687024	+	84	78213373	-	Syncc9605_1852	-	phosphoribosylformylglycinamidine synthetase PurS
1819	 63.59	0	1687021..1687671	+	216	78213374	-	Syncc9605_1853	-	phosphoribosylformylglycinamidine synthase subunit I
1820	 63.21	0	1687671..1688624	+	317	78213375	-	Syncc9605_1854	-	hypothetical protein
1821	 60.86	0	1688657..1689310	+	217	78213376	-	Syncc9605_1855	-	hypothetical protein
1822	 58.87	0	1689356..1689817	+	153	78213377	-	Syncc9605_1856	-	hypothetical protein
1823	 62.20	0	1689901..1690974	-	357	78213378	-	Syncc9605_1857	-	fructose-1,6-bisphosphate aldolase
1824	 66.67	+1	1691035..1692117	-	360	78213379	-	Syncc9605_1858	-	putative oxidoreductase
1825	 62.37	0	1692119..1692490	-	123	78213380	-	Syncc9605_1859	-	hypothetical protein
1826	 61.22	0	1692487..1693368	-	293	78213381	-	Syncc9605_1860	-	acetyl-CoA carboxylase subunit beta
1827	 62.46	0	1694209..1694493	-	94	78213382	-	Syncc9605_1863	-	hypothetical protein
1828	 57.48	0	1694561..1695463	-	300	78213383	-	Syncc9605_1864	-	phosphoribulokinase
1829	 63.78	0	1695528..1696601	-	357	78213384	-	Syncc9605_1865	-	3-isopropylmalate dehydrogenase
1830	 66.11	+1	1696634..1697710	-	358	78213385	-	Syncc9605_1866	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1831	 66.20	+1	1697713..1698786	-	357	78213386	-	Syncc9605_1867	-	gamma-glutamyl kinase
1832	 64.56	0	1698783..1699304	-	173	78213387	-	Syncc9605_1868	-	HAD family phosphatase
1833	 60.18	0	1699292..1699846	-	184	78213388	-	Syncc9605_1869	-	hypothetical protein
1834	 70.23	+1	1699867..1700343	-	158	78213389	-	Syncc9605_1870	-	Holliday junction resolvase YqgF
1835	 65.79	+1	1700343..1701374	-	343	78213390	-	Syncc9605_1871	-	hypothetical protein
1836	 66.93	+1	1701413..1702573	-	386	78213391	-	Syncc9605_1872	-	hypothetical protein
1837	 60.14	0	1702636..1703202	-	188	78213392	-	Syncc9605_1873	-	hypothetical protein
1838	 66.30	+1	1703218..1704837	-	539	78213393	-	Syncc9605_1874	-	hypothetical protein
1839	 62.28	0	1704882..1705337	-	151	78213394	-	Syncc9605_1875	-	ferric uptake regulator family protein
1840	 64.58	0	1705379..1706146	-	255	78213395	-	Syncc9605_1876	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1841	 65.12	0	1706233..1707138	+	301	78213396	-	Syncc9605_1877	-	nucleotide sugar epimerase
1842	 66.48	+1	1707107..1707643	-	178	78213397	-	Syncc9605_1878	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
1843	 62.87	0	1707675..1708148	+	157	78213398	-	Syncc9605_1879	-	CBS
1844	 58.56	0	1708120..1708452	+	110	78213399	-	Syncc9605_1880	-	hypothetical protein
1845	 56.40	0	1708433..1708948	+	171	78213400	-	Syncc9605_1881	-	hypothetical protein
1846	 52.56	-1	1709205..1709516	+	103	78213401	-	Syncc9605_1882	-	ferredoxin (2Fe-2S)
1847	 60.95	0	1710058..1710582	-	174	78213402	-	Syncc9605_1883	-	dCTP deaminase
1848	 53.83	0	1711277..1711720	+	147	78213403	-	Syncc9605_1884	-	hypothetical protein
1849	 51.63	-1	1711720..1712118	+	132	78213404	-	Syncc9605_1885	-	hypothetical protein
1850	 54.57	0	1712389..1712793	-	134	78213405	-	Syncc9605_1886	-	hypothetical protein
1851	 65.26	0	1712914..1713483	-	189	78213406	-	Syncc9605_1887	-	hypothetical protein
1852	 64.26	0	1713487..1714941	-	484	78213407	-	Syncc9605_1888	-	hypothetical protein
1853	 62.07	0	1714938..1715612	-	224	78213408	-	Syncc9605_1889	-	hypothetical protein
1854	 60.53	0	1715654..1715881	+	75	78213409	-	Syncc9605_1890	-	hypothetical protein
1855	 67.51	+1	1717059..1717295	-	78	78213410	-	Syncc9605_1893	-	hypothetical protein
1856	 65.19	0	1717381..1717989	+	202	78213411	-	Syncc9605_1894	-	hypothetical protein
1857	 65.56	0	1717967..1718236	+	89	78213412	-	Syncc9605_1895	-	hypothetical protein
1858	 61.85	0	1718233..1718730	+	165	78213413	-	Syncc9605_1896	-	hypothetical protein
1859	 59.20	0	1718721..1718921	-	66	78213414	-	Syncc9605_1897	-	hypothetical protein
1860	 64.52	0	1718965..1720500	-	511	78213415	-	Syncc9605_1898	-	hypothetical protein
1861	 64.07	0	1720545..1721084	+	179	78213416	-	Syncc9605_1899	-	hypothetical protein
1862	 63.66	0	1721101..1721832	-	243	78213417	-	Syncc9605_1900	-	hypothetical protein
1863	 59.60	0	1722357..1722653	-	98	78213418	-	Syncc9605_1901	-	hypothetical protein
1864	 42.37	-2	1723046..1724329	-	427	78213419	-	Syncc9605_1902	-	Na+/H+ antiporter NhaP
1865	 53.88	0	1725001..1725258	-	85	78213420	-	Syncc9605_1903	-	hypothetical protein
1866	 57.02	0	1725410..1725865	+	151	78213421	-	Syncc9605_1904	-	hypothetical protein
1867	 55.04	0	1726577..1727746	+	389	78213422	-	Syncc9605_1905	-	beta-lactamase class C and other penicillin binding proteins
1868	 59.84	0	1728207..1729670	+	487	78213423	-	Syncc9605_1906	-	amine oxidase (flavin-containing)
1869	 58.33	0	1730207..1730446	-	79	78213424	-	Syncc9605_1907	-	hypothetical protein
1870	 53.88	0	1730647..1731045	+	132	78213425	-	Syncc9605_1908	-	hypothetical protein
1871	 60.49	0	1731817..1732059	+	80	78213426	-	Syncc9605_1909	-	hypothetical protein
1872	 58.15	0	1732068..1732337	+	89	78213427	-	Syncc9605_1910	-	hypothetical protein
1873	 60.95	0	1732393..1732602	+	69	78213428	-	Syncc9605_1911	-	hypothetical protein
1874	 60.87	0	1732592..1735195	-	867	78213429	-	Syncc9605_1912	-	alanyl aminopeptidase
1875	 54.50	0	1735375..1735785	-	136	78213430	-	Syncc9605_1913	-	cAMP phosphodiesterase class-II
1876	 58.17	0	1735880..1736479	-	199	78213431	-	Syncc9605_1914	-	hypothetical protein
1877	 59.06	0	1736504..1737739	+	411	78213432	-	Syncc9605_1915	-	adaptive-response sensory kinase
1878	 57.28	0	1737986..1738507	-	173	78213433	-	Syncc9605_1916	-	hypothetical protein
1879	 59.36	0	1738669..1739859	+	396	78213434	-	Syncc9605_1917	-	ferredoxin--NADP reductase (FNR)
1880	 62.27	0	1740028..1741551	+	507	78213435	-	Syncc9605_1918	-	glucose-6-phosphate 1-dehydrogenase
1881	 65.97	+1	1741610..1742896	+	428	78213436	-	Syncc9605_1919	-	glucose 6-phosphate dehydrogenase effector OpcA
1882	 65.97	+1	1742911..1744338	+	475	78213437	-	Syncc9605_1920	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
1883	 69.05	+1	1744335..1744586	+	83	78213438	-	Syncc9605_1921	-	acylphosphatase
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.