IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1728	 50.00	-1	1607210..1607527	-	105	78213283	-	Syncc9605_1760	-	hypothetical protein
1729	 50.20	-1	1608069..1608572	-	167	78213284	-	Syncc9605_1761	-	hypothetical protein
1730	 52.05	-1	1608787..1609176	-	129	78213285	-	Syncc9605_1762	-	hypothetical protein
1731	 51.79	-1	1609461..1609655	-	64	78213286	-	Syncc9605_1763	-	hypothetical protein
1732	 64.46	0	1610308..1611258	+	316	78213287	-	Syncc9605_1764	-	putative histone deacetylase/AcuC/AphA family protein
1733	 64.08	0	1611255..1611833	+	192	78213288	-	Syncc9605_1765	-	hypothetical protein
1734	 63.64	0	1611840..1612169	-	109	78213289	-	Syncc9605_1766	-	hypothetical protein
1735	 64.47	0	1613631..1614131	-	166	78213290	-	Syncc9605_1769	-	hypothetical protein
1736	 62.46	0	1614199..1614912	+	237	78213291	-	Syncc9605_1770	-	hypothetical protein
1737	 60.71	0	1614955..1615206	+	83	78213292	-	Syncc9605_1771	-	hypothetical protein
1738	 65.35	0	1615209..1615970	-	253	78213293	-	Syncc9605_1772	-	ICC (3',5'-cyclic-nucleotide phosphodiesterase) protein
1739	 63.68	0	1615948..1616181	-	77	78213294	-	Syncc9605_1773	-	hypothetical protein
1740	 58.43	0	1616181..1616447	-	88	78213295	-	Syncc9605_1774	-	hypothetical protein
1741	 61.84	0	1616594..1617049	+	151	78213296	-	Syncc9605_1775	-	ferric uptake regulator family protein
1742	 52.06	-1	1617065..1617331	-	88	78213297	-	Syncc9605_1776	-	hypothetical protein
1743	 60.35	0	1617370..1617765	-	131	78213298	-	Syncc9605_1777	-	hypothetical protein
1744	 60.42	0	1617769..1618008	-	79	78213299	-	Syncc9605_1778	-	hypothetical protein
1745	 59.96	0	1618033..1618986	-	317	78213300	-	Syncc9605_1779	-	L-asparaginase II
1746	 61.70	0	1619062..1620270	-	402	78213301	-	Syncc9605_1780	-	glucosylglycerol 3-phosphatase
1747	 65.13	0	1620384..1621754	+	456	78213302	-	Syncc9605_1781	-	cell death suppressor protein Lls1-like
1748	 61.81	0	1621755..1622186	-	143	78213303	-	Syncc9605_1782	-	hypothetical protein
1749	 49.29	-1	1622471..1623034	+	187	78213304	-	Syncc9605_1783	-	putative glutathione S-transferase
1750	 61.39	0	1623251..1624765	+	504	78213305	-	Syncc9605_1784	-	hypothetical protein
1751	 48.28	-1	1625004..1626482	+	492	78213306	-	Syncc9605_1785	-	hypothetical protein
1752	 42.68	-2	1627035..1627280	-	81	78213307	-	Syncc9605_1786	-	hypothetical protein
1753	 45.17	-2	1627578..1628084	-	168	78213308	-	Syncc9605_1787	-	hypothetical protein
1754	 48.61	-1	1628097..1628384	-	95	78213309	-	Syncc9605_1788	-	hypothetical protein
1755	 42.65	-2	1628381..1628659	-	92	78213310	-	Syncc9605_1789	-	hypothetical protein
1756	 44.72	-2	1628700..1628945	-	81	78213311	-	Syncc9605_1790	-	hypothetical protein
1757	 42.32	-2	1629301..1629567	-	88	78213312	-	Syncc9605_1791	-	hypothetical protein
1758	 42.51	-2	1629636..1630583	-	315	78213313	-	Syncc9605_1792	-	hypothetical protein
1759	 44.30	-2	1632379..1632606	+	75	78213314	-	Syncc9605_1793	-	hypothetical protein
1760	 53.25	0	1634078..1634308	-	76	78213315	-	Syncc9605_1794	-	hypothetical protein
1761	 61.98	0	1634768..1635898	+	376	78213316	-	Syncc9605_1795	-	hypothetical protein
1762	 63.54	0	1635900..1636475	+	191	78213317	-	Syncc9605_1796	-	hypothetical protein
1763	 62.79	0	1636515..1637519	+	334	78213318	-	Syncc9605_1797	-	hypothetical protein
1764	 61.16	0	1637563..1638234	+	223	78213319	-	Syncc9605_1798	-	hypothetical protein
1765	 60.78	0	1638263..1639588	+	441	78213320	-	Syncc9605_1799	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1766	 59.73	0	1639605..1640498	+	297	78213321	-	Syncc9605_1800	-	homoserine O-succinyltransferase
1767	 55.97	0	1640524..1640841	-	105	78213322	-	Syncc9605_1801	-	hypothetical protein
1768	 56.58	0	1640901..1641485	+	194	78213323	-	Syncc9605_1802	-	DNA-N1-methyladenine dioxygenase
1769	 61.42	0	1641476..1642390	-	304	78213324	-	Syncc9605_1803	-	AEC family transporter
1770	 52.08	-1	1642479..1642670	+	63	78213325	-	Syncc9605_1804	-	hypothetical protein
1771	 55.38	0	1642863..1643252	+	129	78213326	-	Syncc9605_1805	-	hypothetical protein
1772	 60.62	0	1643714..1644457	-	247	78213327	-	Syncc9605_1806	-	ATPase
1773	 61.54	0	1644454..1645428	-	324	78213328	-	Syncc9605_1807	-	amino acid ABC transporter permease
1774	 59.26	0	1645428..1646318	-	296	78213329	-	Syncc9605_1808	-	amino acid ABC transporter permease
1775	 60.92	0	1646318..1647379	-	353	78213330	-	Syncc9605_1809	-	extracellular solute-binding protein
1776	 60.78	0	1647772..1649334	-	520	78213331	-	Syncc9605_1810	-	putative sulfate transporter
1777	 64.10	0	1649365..1650570	-	401	78213332	-	Syncc9605_1811	-	hypothetical protein
1778	 62.66	0	1650619..1651716	+	365	78213333	-	Syncc9605_1812	-	hypothetical protein
1779	 57.02	0	1652045..1652386	+	113	78213334	-	Syncc9605_1813	-	hypothetical protein
1780	 62.53	0	1652367..1654010	-	547	78213335	-	Syncc9605_1814	-	oxidoreductase
1781	 60.89	0	1654192..1655160	-	322	78213336	-	Syncc9605_1815	-	hypothetical protein
1782	 63.23	0	1655178..1655672	-	164	78213337	-	Syncc9605_1816	-	hypothetical protein
1783	 58.82	0	1655684..1656040	-	118	78213338	-	Syncc9605_1817	-	Iojap-related protein
1784	 59.75	0	1656033..1656668	-	211	78213339	-	Syncc9605_1818	-	hypothetical protein
1785	 61.64	0	1656773..1660096	+	1107	78213340	carB	Syncc9605_1819	-	carbamoyl phosphate synthase large subunit
1786	 60.96	0	1660132..1660797	+	221	78213341	-	Syncc9605_1820	-	hypothetical protein
1787	 60.40	0	1660803..1662206	+	467	78213342	-	Syncc9605_1821	-	amino acid carrier protein
1788	 59.74	0	1662268..1662498	-	76	78213343	-	Syncc9605_1822	-	hypothetical protein
1789	 61.63	0	1662548..1664293	-	581	78213344	-	Syncc9605_1823	-	ATPase
1790	 57.21	0	1664309..1664530	+	73	78213345	-	Syncc9605_1824	-	RNA-binding S4
1791	 59.71	0	1664548..1665294	+	248	78213346	tpiA	Syncc9605_1825	-	triosephosphate isomerase
1792	 64.54	0	1665272..1666117	+	281	78213347	-	Syncc9605_1826	-	dihydropteroate synthase
1793	 55.49	0	1666114..1667097	+	327	78213348	-	Syncc9605_1827	-	hypothetical protein
1794	 59.84	0	1667168..1671193	-	1341	78213349	-	Syncc9605_1828	-	magnesium chelatase
1795	 64.51	0	1671311..1672144	+	277	78213350	-	Syncc9605_1829	-	dihydrodipicolinate reductase
1796	 64.69	0	1672155..1672811	+	218	78213351	-	Syncc9605_1830	-	hypothetical protein
1797	 65.48	0	1672876..1673127	+	83	78213352	-	Syncc9605_1831	-	high light inducible protein
1798	 64.40	0	1673169..1674314	+	381	78213353	-	Syncc9605_1832	-	2-octaprenyl-6-methoxyphenol 4-monoxygenase UbiH
1799	 59.62	0	1674335..1674547	+	70	78213354	-	Syncc9605_1833	-	hypothetical protein
1800	 62.62	0	1674538..1675056	-	172	78213355	-	Syncc9605_1834	-	adenine phosphoribosyltransferase
1801	 64.85	0	1675100..1675648	+	182	78213356	-	Syncc9605_1835	-	hypothetical protein
1802	 61.79	0	1675656..1676270	+	204	78213357	-	Syncc9605_1836	-	hypothetical protein
1803	 60.98	0	1676330..1676698	+	122	78213358	-	Syncc9605_1837	-	hypothetical protein
1804	 59.16	0	1676695..1677147	-	150	78213359	-	Syncc9605_1838	-	hypothetical protein
1805	 61.85	0	1677242..1678009	+	255	78213360	-	Syncc9605_1839	-	two component transcriptional regulator
1806	 62.22	0	1678011..1679336	+	441	78213361	-	Syncc9605_1840	-	periplasmic sensor signal transduction histidine kinase
1807	 53.50	0	1679363..1680319	+	318	78213362	-	Syncc9605_1841	-	hypothetical protein
1808	 46.79	-2	1680439..1680750	-	103	78213363	-	Syncc9605_1842	-	hypothetical protein
1809	 57.28	0	1680913..1681125	+	70	78213364	-	Syncc9605_1843	-	hypothetical protein
1810	 55.28	0	1681291..1681536	-	81	78213365	-	Syncc9605_1844	-	hypothetical protein
1811	 59.71	0	1681651..1682901	-	416	78213366	-	Syncc9605_1845	-	major facilitator superfamily multidrug-efflux transporter
1812	 60.02	0	1682898..1683920	-	340	78213367	-	Syncc9605_1846	-	glyceraldehyde-3-phosphate dehydrogenase
1813	 62.89	0	1683981..1684298	+	105	78213368	-	Syncc9605_1847	-	ArsR family transcriptional regulator
1814	 58.90	0	1684301..1684918	+	205	78213369	-	Syncc9605_1848	-	hypothetical protein
1815	 42.52	-2	1684974..1685996	+	340	78213370	-	Syncc9605_1849	-	small mechanosensitive ion channel
1816	 57.78	0	1685957..1686271	-	104	78213371	-	Syncc9605_1850	-	hypothetical protein
1817	 63.95	0	1686310..1686714	-	134	78213372	-	Syncc9605_1851	-	hypothetical protein
1818	 63.92	0	1686770..1687024	+	84	78213373	-	Syncc9605_1852	-	phosphoribosylformylglycinamidine synthetase PurS
1819	 63.59	0	1687021..1687671	+	216	78213374	-	Syncc9605_1853	-	phosphoribosylformylglycinamidine synthase subunit I
1820	 63.21	0	1687671..1688624	+	317	78213375	-	Syncc9605_1854	-	hypothetical protein
1821	 60.86	0	1688657..1689310	+	217	78213376	-	Syncc9605_1855	-	hypothetical protein
1822	 58.87	0	1689356..1689817	+	153	78213377	-	Syncc9605_1856	-	hypothetical protein
1823	 62.20	0	1689901..1690974	-	357	78213378	-	Syncc9605_1857	-	fructose-1,6-bisphosphate aldolase
1824	 66.67	+1	1691035..1692117	-	360	78213379	-	Syncc9605_1858	-	putative oxidoreductase
1825	 62.37	0	1692119..1692490	-	123	78213380	-	Syncc9605_1859	-	hypothetical protein
1826	 61.22	0	1692487..1693368	-	293	78213381	-	Syncc9605_1860	-	acetyl-CoA carboxylase subunit beta
1827	 62.46	0	1694209..1694493	-	94	78213382	-	Syncc9605_1863	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.