IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1693	 40.50	-2	1579999..1580277	-	92	78213248	-	Syncc9605_1723	-	hypothetical protein
1694	 42.07	-2	1580591..1580899	+	102	78213249	-	Syncc9605_1724	-	hypothetical protein
1695	 50.72	-1	1581296..1581847	+	183	78213250	-	Syncc9605_1725	-	hypothetical protein
1696	 36.78	-2	1582118..1582378	-	86	78213251	-	Syncc9605_1726	-	hypothetical protein
1697	 40.71	-2	1582436..1582828	+	130	78213252	-	Syncc9605_1727	-	hypothetical protein
1698	 41.48	-2	1582880..1583149	-	89	78213253	-	Syncc9605_1728	-	hypothetical protein
1699	 51.82	-1	1583497..1584129	-	210	78213254	-	Syncc9605_1729	-	hypothetical protein
1700	 53.82	0	1585034..1585282	-	82	78213255	-	Syncc9605_1730	-	hypothetical protein
1701	 54.49	0	1585556..1586089	+	177	78213256	-	Syncc9605_1731	-	hypothetical protein
1702	 54.60	0	1586384..1586698	-	104	78213257	-	Syncc9605_1732	-	hypothetical protein
1703	 49.82	-1	1586815..1587093	-	92	78213258	-	Syncc9605_1733	-	hypothetical protein
1704	 59.26	0	1587128..1587370	-	80	78213259	-	Syncc9605_1734	-	hypothetical protein
1705	 59.77	0	1588895..1589068	-	57	78213260	-	Syncc9605_1735	-	hypothetical protein
1706	 53.19	0	1589666..1589947	-	93	78213261	-	Syncc9605_1736	-	hypothetical protein
1707	 55.00	0	1589919..1590518	-	199	78213262	-	Syncc9605_1737	-	hypothetical protein
1708	 44.87	-2	1591162..1591395	+	77	78213263	-	Syncc9605_1738	-	hypothetical protein
1709	 38.00	-2	1592989..1593888	+	299	78213264	-	Syncc9605_1741	-	hypothetical protein
1710	 51.58	-1	1594101..1594544	-	147	78213265	-	Syncc9605_1742	-	hypothetical protein
1711	 42.36	-2	1595237..1595524	+	95	78213266	-	Syncc9605_1743	-	hypothetical protein
1712	 53.96	0	1595899..1596378	+	159	78213267	-	Syncc9605_1744	-	hypothetical protein
1713	 45.74	-2	1596401..1596811	-	136	78213268	-	Syncc9605_1745	-	hypothetical protein
1714	 62.05	0	1597084..1597950	-	288	78213269	-	Syncc9605_1746	-	pfkB family carbohydrate kinase
1715	 54.26	0	1598066..1598323	+	85	78213270	-	Syncc9605_1747	-	hypothetical protein
1716	 57.54	0	1598551..1598835	-	94	78213271	-	Syncc9605_1748	-	hypothetical protein
1717	 60.49	0	1599037..1599279	+	80	78213272	-	Syncc9605_1749	-	hypothetical protein
1718	 48.39	-1	1599283..1599561	+	92	78213273	-	Syncc9605_1750	-	hypothetical protein
1719	 54.60	0	1599599..1599946	-	115	78213274	-	Syncc9605_1751	-	hypothetical protein
1720	 48.62	-1	1602219..1602944	+	241	78213275	-	Syncc9605_1752	-	pectate lyase
1721	 49.65	-1	1603050..1603190	+	46	78213276	-	Syncc9605_1753	-	hypothetical protein
1722	 51.31	-1	1603548..1603814	-	88	78213277	-	Syncc9605_1754	-	hypothetical protein
1723	 64.04	0	1603851..1604117	-	88	78213278	-	Syncc9605_1755	-	hypothetical protein
1724	 60.61	0	1604226..1604423	+	65	78213279	-	Syncc9605_1756	-	high light inducible protein
1725	 56.31	0	1604819..1605301	-	160	78213280	-	Syncc9605_1757	-	hypothetical protein
1726	 60.90	0	1605305..1605703	-	132	78213281	-	Syncc9605_1758	-	hypothetical protein
1727	 56.35	0	1606085..1606336	+	83	78213282	-	Syncc9605_1759	-	hypothetical protein
1728	 50.00	-1	1607210..1607527	-	105	78213283	-	Syncc9605_1760	-	hypothetical protein
1729	 50.20	-1	1608069..1608572	-	167	78213284	-	Syncc9605_1761	-	hypothetical protein
1730	 52.05	-1	1608787..1609176	-	129	78213285	-	Syncc9605_1762	-	hypothetical protein
1731	 51.79	-1	1609461..1609655	-	64	78213286	-	Syncc9605_1763	-	hypothetical protein
1732	 64.46	0	1610308..1611258	+	316	78213287	-	Syncc9605_1764	-	putative histone deacetylase/AcuC/AphA family protein
1733	 64.08	0	1611255..1611833	+	192	78213288	-	Syncc9605_1765	-	hypothetical protein
1734	 63.64	0	1611840..1612169	-	109	78213289	-	Syncc9605_1766	-	hypothetical protein
1735	 64.47	0	1613631..1614131	-	166	78213290	-	Syncc9605_1769	-	hypothetical protein
1736	 62.46	0	1614199..1614912	+	237	78213291	-	Syncc9605_1770	-	hypothetical protein
1737	 60.71	0	1614955..1615206	+	83	78213292	-	Syncc9605_1771	-	hypothetical protein
1738	 65.35	0	1615209..1615970	-	253	78213293	-	Syncc9605_1772	-	ICC (3',5'-cyclic-nucleotide phosphodiesterase) protein
1739	 63.68	0	1615948..1616181	-	77	78213294	-	Syncc9605_1773	-	hypothetical protein
1740	 58.43	0	1616181..1616447	-	88	78213295	-	Syncc9605_1774	-	hypothetical protein
1741	 61.84	0	1616594..1617049	+	151	78213296	-	Syncc9605_1775	-	ferric uptake regulator family protein
1742	 52.06	-1	1617065..1617331	-	88	78213297	-	Syncc9605_1776	-	hypothetical protein
1743	 60.35	0	1617370..1617765	-	131	78213298	-	Syncc9605_1777	-	hypothetical protein
1744	 60.42	0	1617769..1618008	-	79	78213299	-	Syncc9605_1778	-	hypothetical protein
1745	 59.96	0	1618033..1618986	-	317	78213300	-	Syncc9605_1779	-	L-asparaginase II
1746	 61.70	0	1619062..1620270	-	402	78213301	-	Syncc9605_1780	-	glucosylglycerol 3-phosphatase
1747	 65.13	0	1620384..1621754	+	456	78213302	-	Syncc9605_1781	-	cell death suppressor protein Lls1-like
1748	 61.81	0	1621755..1622186	-	143	78213303	-	Syncc9605_1782	-	hypothetical protein
1749	 49.29	-1	1622471..1623034	+	187	78213304	-	Syncc9605_1783	-	putative glutathione S-transferase
1750	 61.39	0	1623251..1624765	+	504	78213305	-	Syncc9605_1784	-	hypothetical protein
1751	 48.28	-1	1625004..1626482	+	492	78213306	-	Syncc9605_1785	-	hypothetical protein
1752	 42.68	-2	1627035..1627280	-	81	78213307	-	Syncc9605_1786	-	hypothetical protein
1753	 45.17	-2	1627578..1628084	-	168	78213308	-	Syncc9605_1787	-	hypothetical protein
1754	 48.61	-1	1628097..1628384	-	95	78213309	-	Syncc9605_1788	-	hypothetical protein
1755	 42.65	-2	1628381..1628659	-	92	78213310	-	Syncc9605_1789	-	hypothetical protein
1756	 44.72	-2	1628700..1628945	-	81	78213311	-	Syncc9605_1790	-	hypothetical protein
1757	 42.32	-2	1629301..1629567	-	88	78213312	-	Syncc9605_1791	-	hypothetical protein
1758	 42.51	-2	1629636..1630583	-	315	78213313	-	Syncc9605_1792	-	hypothetical protein
1759	 44.30	-2	1632379..1632606	+	75	78213314	-	Syncc9605_1793	-	hypothetical protein
1760	 53.25	0	1634078..1634308	-	76	78213315	-	Syncc9605_1794	-	hypothetical protein
1761	 61.98	0	1634768..1635898	+	376	78213316	-	Syncc9605_1795	-	hypothetical protein
1762	 63.54	0	1635900..1636475	+	191	78213317	-	Syncc9605_1796	-	hypothetical protein
1763	 62.79	0	1636515..1637519	+	334	78213318	-	Syncc9605_1797	-	hypothetical protein
1764	 61.16	0	1637563..1638234	+	223	78213319	-	Syncc9605_1798	-	hypothetical protein
1765	 60.78	0	1638263..1639588	+	441	78213320	-	Syncc9605_1799	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1766	 59.73	0	1639605..1640498	+	297	78213321	-	Syncc9605_1800	-	homoserine O-succinyltransferase
1767	 55.97	0	1640524..1640841	-	105	78213322	-	Syncc9605_1801	-	hypothetical protein
1768	 56.58	0	1640901..1641485	+	194	78213323	-	Syncc9605_1802	-	DNA-N1-methyladenine dioxygenase
1769	 61.42	0	1641476..1642390	-	304	78213324	-	Syncc9605_1803	-	AEC family transporter
1770	 52.08	-1	1642479..1642670	+	63	78213325	-	Syncc9605_1804	-	hypothetical protein
1771	 55.38	0	1642863..1643252	+	129	78213326	-	Syncc9605_1805	-	hypothetical protein
1772	 60.62	0	1643714..1644457	-	247	78213327	-	Syncc9605_1806	-	ATPase
1773	 61.54	0	1644454..1645428	-	324	78213328	-	Syncc9605_1807	-	amino acid ABC transporter permease
1774	 59.26	0	1645428..1646318	-	296	78213329	-	Syncc9605_1808	-	amino acid ABC transporter permease
1775	 60.92	0	1646318..1647379	-	353	78213330	-	Syncc9605_1809	-	extracellular solute-binding protein
1776	 60.78	0	1647772..1649334	-	520	78213331	-	Syncc9605_1810	-	putative sulfate transporter
1777	 64.10	0	1649365..1650570	-	401	78213332	-	Syncc9605_1811	-	hypothetical protein
1778	 62.66	0	1650619..1651716	+	365	78213333	-	Syncc9605_1812	-	hypothetical protein
1779	 57.02	0	1652045..1652386	+	113	78213334	-	Syncc9605_1813	-	hypothetical protein
1780	 62.53	0	1652367..1654010	-	547	78213335	-	Syncc9605_1814	-	oxidoreductase
1781	 60.89	0	1654192..1655160	-	322	78213336	-	Syncc9605_1815	-	hypothetical protein
1782	 63.23	0	1655178..1655672	-	164	78213337	-	Syncc9605_1816	-	hypothetical protein
1783	 58.82	0	1655684..1656040	-	118	78213338	-	Syncc9605_1817	-	Iojap-related protein
1784	 59.75	0	1656033..1656668	-	211	78213339	-	Syncc9605_1818	-	hypothetical protein
1785	 61.64	0	1656773..1660096	+	1107	78213340	carB	Syncc9605_1819	-	carbamoyl phosphate synthase large subunit
1786	 60.96	0	1660132..1660797	+	221	78213341	-	Syncc9605_1820	-	hypothetical protein
1787	 60.40	0	1660803..1662206	+	467	78213342	-	Syncc9605_1821	-	amino acid carrier protein
1788	 59.74	0	1662268..1662498	-	76	78213343	-	Syncc9605_1822	-	hypothetical protein
1789	 61.63	0	1662548..1664293	-	581	78213344	-	Syncc9605_1823	-	ATPase
1790	 57.21	0	1664309..1664530	+	73	78213345	-	Syncc9605_1824	-	RNA-binding S4
1791	 59.71	0	1664548..1665294	+	248	78213346	tpiA	Syncc9605_1825	-	triosephosphate isomerase
1792	 64.54	0	1665272..1666117	+	281	78213347	-	Syncc9605_1826	-	dihydropteroate synthase
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.