IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1640	 54.86	0	1536635..1536922	-	95	78213195	-	Syncc9605_1670	-	hypothetical protein
1641	 53.91	0	1537130..1537372	-	80	78213196	-	Syncc9605_1671	-	hypothetical protein
1642	 59.06	0	1537649..1538200	-	183	78213197	-	Syncc9605_1672	-	hypothetical protein
1643	 58.39	0	1538729..1539139	-	136	78213198	-	Syncc9605_1673	-	hypothetical protein
1644	 57.84	0	1539143..1539346	-	67	78213199	-	Syncc9605_1674	-	hypothetical protein
1645	 57.44	0	1539367..1539756	+	129	78213200	-	Syncc9605_1675	-	hypothetical protein
1646	 60.14	0	1539790..1540080	+	96	78213201	-	Syncc9605_1676	-	hypothetical protein
1647	 56.60	0	1540195..1540512	+	105	78213202	-	Syncc9605_1677	-	hypothetical protein
1648	 61.93	0	1540650..1541135	+	161	78213203	-	Syncc9605_1678	-	hypothetical protein
1649	 62.34	0	1541219..1541773	-	184	78213204	-	Syncc9605_1679	-	hypothetical protein
1650	 58.95	0	1541770..1542054	-	94	78213205	-	Syncc9605_1680	-	hypothetical protein
1651	 62.30	0	1542090..1543646	-	518	78213206	-	Syncc9605_1681	-	carotenoid isomerase
1652	 63.24	0	1543670..1543873	-	67	78213207	-	Syncc9605_1682	-	CDF family cation efflux system protein
1653	 69.05	+1	1543919..1544086	-	55	78213208	-	Syncc9605_1683	-	CDF family cation efflux system protein
1654	 66.67	+1	1544159..1544383	-	74	78213209	-	Syncc9605_1684	-	CDF family cation efflux system protein
1655	 64.29	0	1544384..1544635	-	83	78213210	-	Syncc9605_1685	-	CDF family cation efflux system protein
1656	 63.82	0	1544632..1546002	-	456	78213211	-	Syncc9605_1686	-	tRNA (uracil-5-)-methyltransferase Gid
1657	 61.50	0	1546050..1546262	-	70	78213212	-	Syncc9605_1687	-	hypothetical protein
1658	 65.30	0	1546366..1546878	-	170	78213213	-	Syncc9605_1688	-	carbonic anhydrase
1659	 63.50	0	1547226..1548392	+	388	78213214	-	Syncc9605_1689	-	hypothetical protein
1660	 55.23	0	1548688..1548993	+	101	78213215	-	Syncc9605_1690	-	hypothetical protein
1661	 59.29	0	1549003..1549314	+	103	78213216	-	Syncc9605_1691	-	hypothetical protein
1662	 54.68	0	1549661..1550002	+	113	78213217	-	Syncc9605_1692	-	hypothetical protein
1663	 55.24	0	1550047..1550256	+	69	78213218	-	Syncc9605_1693	-	hypothetical protein
1664	 59.83	0	1550253..1550852	+	199	78213219	-	Syncc9605_1694	-	hypothetical protein
1665	 55.37	0	1550849..1552096	+	415	78213220	-	Syncc9605_1695	-	hypothetical protein
1666	 63.25	0	1552515..1552982	+	155	78213221	-	Syncc9605_1696	-	hypothetical protein
1667	 59.13	0	1553360..1553611	+	83	78213222	-	Syncc9605_1697	-	hypothetical protein
1668	 52.33	-1	1553637..1553936	+	99	78213223	-	Syncc9605_1698	-	hypothetical protein
1669	 56.38	0	1554230..1555804	+	524	78213224	-	Syncc9605_1699	-	hypothetical protein
1670	 48.64	-1	1556112..1557986	+	624	78213225	-	Syncc9605_1700	-	hypothetical protein
1671	 49.46	-1	1558148..1559164	+	338	78213226	-	Syncc9605_1701	-	carbamoyl-phosphate synthase L chain
1672	 57.14	0	1559430..1559975	+	181	78213227	-	Syncc9605_1702	-	hypothetical protein
1673	 61.46	0	1559968..1560984	+	338	78213228	-	Syncc9605_1703	-	hypothetical protein
1674	 63.93	0	1560984..1561166	+	60	78213229	-	Syncc9605_1704	-	hypothetical protein
1675	 60.69	0	1561166..1562203	+	345	78213230	-	Syncc9605_1705	-	hypothetical protein
1676	 60.02	0	1562649..1563821	-	390	78213231	-	Syncc9605_1706	-	phage integrase family protein
1677	 57.91	0	1564571..1564867	+	98	78213232	-	Syncc9605_1707	-	hypothetical protein
1678	 52.81	-1	1564857..1565123	+	88	78213233	-	Syncc9605_1708	-	hypothetical protein
1679	 59.45	0	1565410..1565880	+	156	78213234	-	Syncc9605_1709	-	hypothetical protein
1680	 59.60	0	1565971..1566168	-	65	78213235	-	Syncc9605_1710	-	hypothetical protein
1681	 55.25	0	1566231..1566449	-	72	78213236	-	Syncc9605_1711	-	hypothetical protein
1682	 54.82	0	1567088..1568404	+	438	78213237	-	Syncc9605_1712	-	hypothetical protein
1683	 46.64	-2	1568570..1569967	+	465	78213238	-	Syncc9605_1713	-	hypothetical protein
1684	 58.69	0	1570378..1570941	+	187	78213239	-	Syncc9605_1714	-	hypothetical protein
1685	 46.92	-1	1571318..1573003	+	561	78213240	-	Syncc9605_1715	-	hypothetical protein
1686	 53.33	0	1573143..1573622	+	159	78213241	-	Syncc9605_1716	-	hypothetical protein
1687	 57.64	0	1573622..1574197	+	191	78213242	-	Syncc9605_1717	-	hypothetical protein
1688	 61.36	0	1574210..1574548	+	112	78213243	-	Syncc9605_1718	-	hypothetical protein
1689	 59.24	0	1574577..1575626	+	349	78213244	-	Syncc9605_1719	-	hypothetical protein
1690	 59.16	0	1576311..1577483	-	390	78213245	-	Syncc9605_1720	-	phage integrase family protein
1691	 59.35	0	1578418..1578663	+	81	78213246	-	Syncc9605_1721	-	hypothetical protein
1692	 46.71	-2	1578666..1579166	+	166	78213247	-	Syncc9605_1722	-	hypothetical protein
1693	 40.50	-2	1579999..1580277	-	92	78213248	-	Syncc9605_1723	-	hypothetical protein
1694	 42.07	-2	1580591..1580899	+	102	78213249	-	Syncc9605_1724	-	hypothetical protein
1695	 50.72	-1	1581296..1581847	+	183	78213250	-	Syncc9605_1725	-	hypothetical protein
1696	 36.78	-2	1582118..1582378	-	86	78213251	-	Syncc9605_1726	-	hypothetical protein
1697	 40.71	-2	1582436..1582828	+	130	78213252	-	Syncc9605_1727	-	hypothetical protein
1698	 41.48	-2	1582880..1583149	-	89	78213253	-	Syncc9605_1728	-	hypothetical protein
1699	 51.82	-1	1583497..1584129	-	210	78213254	-	Syncc9605_1729	-	hypothetical protein
1700	 53.82	0	1585034..1585282	-	82	78213255	-	Syncc9605_1730	-	hypothetical protein
1701	 54.49	0	1585556..1586089	+	177	78213256	-	Syncc9605_1731	-	hypothetical protein
1702	 54.60	0	1586384..1586698	-	104	78213257	-	Syncc9605_1732	-	hypothetical protein
1703	 49.82	-1	1586815..1587093	-	92	78213258	-	Syncc9605_1733	-	hypothetical protein
1704	 59.26	0	1587128..1587370	-	80	78213259	-	Syncc9605_1734	-	hypothetical protein
1705	 59.77	0	1588895..1589068	-	57	78213260	-	Syncc9605_1735	-	hypothetical protein
1706	 53.19	0	1589666..1589947	-	93	78213261	-	Syncc9605_1736	-	hypothetical protein
1707	 55.00	0	1589919..1590518	-	199	78213262	-	Syncc9605_1737	-	hypothetical protein
1708	 44.87	-2	1591162..1591395	+	77	78213263	-	Syncc9605_1738	-	hypothetical protein
1709	 38.00	-2	1592989..1593888	+	299	78213264	-	Syncc9605_1741	-	hypothetical protein
1710	 51.58	-1	1594101..1594544	-	147	78213265	-	Syncc9605_1742	-	hypothetical protein
1711	 42.36	-2	1595237..1595524	+	95	78213266	-	Syncc9605_1743	-	hypothetical protein
1712	 53.96	0	1595899..1596378	+	159	78213267	-	Syncc9605_1744	-	hypothetical protein
1713	 45.74	-2	1596401..1596811	-	136	78213268	-	Syncc9605_1745	-	hypothetical protein
1714	 62.05	0	1597084..1597950	-	288	78213269	-	Syncc9605_1746	-	pfkB family carbohydrate kinase
1715	 54.26	0	1598066..1598323	+	85	78213270	-	Syncc9605_1747	-	hypothetical protein
1716	 57.54	0	1598551..1598835	-	94	78213271	-	Syncc9605_1748	-	hypothetical protein
1717	 60.49	0	1599037..1599279	+	80	78213272	-	Syncc9605_1749	-	hypothetical protein
1718	 48.39	-1	1599283..1599561	+	92	78213273	-	Syncc9605_1750	-	hypothetical protein
1719	 54.60	0	1599599..1599946	-	115	78213274	-	Syncc9605_1751	-	hypothetical protein
1720	 48.62	-1	1602219..1602944	+	241	78213275	-	Syncc9605_1752	-	pectate lyase
1721	 49.65	-1	1603050..1603190	+	46	78213276	-	Syncc9605_1753	-	hypothetical protein
1722	 51.31	-1	1603548..1603814	-	88	78213277	-	Syncc9605_1754	-	hypothetical protein
1723	 64.04	0	1603851..1604117	-	88	78213278	-	Syncc9605_1755	-	hypothetical protein
1724	 60.61	0	1604226..1604423	+	65	78213279	-	Syncc9605_1756	-	high light inducible protein
1725	 56.31	0	1604819..1605301	-	160	78213280	-	Syncc9605_1757	-	hypothetical protein
1726	 60.90	0	1605305..1605703	-	132	78213281	-	Syncc9605_1758	-	hypothetical protein
1727	 56.35	0	1606085..1606336	+	83	78213282	-	Syncc9605_1759	-	hypothetical protein
1728	 50.00	-1	1607210..1607527	-	105	78213283	-	Syncc9605_1760	-	hypothetical protein
1729	 50.20	-1	1608069..1608572	-	167	78213284	-	Syncc9605_1761	-	hypothetical protein
1730	 52.05	-1	1608787..1609176	-	129	78213285	-	Syncc9605_1762	-	hypothetical protein
1731	 51.79	-1	1609461..1609655	-	64	78213286	-	Syncc9605_1763	-	hypothetical protein
1732	 64.46	0	1610308..1611258	+	316	78213287	-	Syncc9605_1764	-	putative histone deacetylase/AcuC/AphA family protein
1733	 64.08	0	1611255..1611833	+	192	78213288	-	Syncc9605_1765	-	hypothetical protein
1734	 63.64	0	1611840..1612169	-	109	78213289	-	Syncc9605_1766	-	hypothetical protein
1735	 64.47	0	1613631..1614131	-	166	78213290	-	Syncc9605_1769	-	hypothetical protein
1736	 62.46	0	1614199..1614912	+	237	78213291	-	Syncc9605_1770	-	hypothetical protein
1737	 60.71	0	1614955..1615206	+	83	78213292	-	Syncc9605_1771	-	hypothetical protein
1738	 65.35	0	1615209..1615970	-	253	78213293	-	Syncc9605_1772	-	ICC (3',5'-cyclic-nucleotide phosphodiesterase) protein
1739	 63.68	0	1615948..1616181	-	77	78213294	-	Syncc9605_1773	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.