IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1560	 50.39	-1	1460643..1461680	+	345	78213115	-	Syncc9605_1590	-	chlorophyll a/b binding light harvesting protein PcbD
1561	 60.24	0	1461868..1463454	-	528	78213116	-	Syncc9605_1591	-	porin
1562	 64.61	0	1463533..1464165	-	210	78213117	-	Syncc9605_1592	-	putative hydrogenase accessory protein
1563	 64.29	0	1464350..1464601	-	83	78213118	-	Syncc9605_1593	-	hypothetical protein
1564	 61.81	0	1464598..1464906	-	102	78213119	-	Syncc9605_1594	-	hypothetical protein
1565	 62.98	0	1464941..1465645	-	234	78213120	-	Syncc9605_1595	-	hypothetical protein
1566	 59.80	0	1465727..1466032	-	101	78213121	-	Syncc9605_1596	-	hypothetical protein
1567	 58.93	0	1466143..1466646	+	167	78213122	-	Syncc9605_1597	-	hypothetical protein
1568	 59.74	0	1466727..1467029	-	100	78213123	-	Syncc9605_1598	-	hypothetical protein
1569	 66.31	+1	1467036..1470683	-	1215	78213124	-	Syncc9605_1599	-	5-oxoprolinase (ATP-hydrolyzing)
1570	 64.47	0	1470803..1471759	+	318	78213125	-	Syncc9605_1600	-	permease
1571	 63.61	0	1471773..1472426	+	217	78213126	-	Syncc9605_1601	-	hypothetical protein
1572	 64.78	0	1472423..1473745	+	440	78213127	-	Syncc9605_1602	-	hypothetical protein
1573	 52.64	-1	1473823..1474941	-	372	78213128	-	Syncc9605_1603	-	hypothetical protein
1574	 54.15	0	1475150..1476076	-	308	78213129	-	Syncc9605_1604	-	ABC transporter substrate-binding protein
1575	 58.08	0	1476174..1476860	+	228	78213130	-	Syncc9605_1605	-	ATPase
1576	 57.79	0	1476853..1477629	+	258	78213131	-	Syncc9605_1606	-	ABC transporter
1577	 46.41	-2	1477811..1478047	-	78	78213132	-	Syncc9605_1607	-	hypothetical protein
1578	 49.48	-1	1478272..1478463	-	63	78213133	-	Syncc9605_1608	-	hypothetical protein
1579	 60.27	0	1478500..1479672	-	390	78213134	-	Syncc9605_1609	-	hypothetical protein
1580	 63.45	0	1479750..1480745	-	331	78213135	-	Syncc9605_1610	-	ribose-phosphate pyrophosphokinase
1581	 69.06	+1	1480802..1481302	+	166	78213136	-	Syncc9605_1611	-	hypothetical protein
1582	 63.99	0	1481299..1482231	-	310	78213137	-	Syncc9605_1612	-	cell envelope-related function transcriptional attenuator
1583	 63.65	0	1482311..1483339	+	342	78213138	-	Syncc9605_1613	-	hypothetical protein
1584	 64.31	0	1483372..1484940	+	522	78213139	-	Syncc9605_1614	-	4-alpha-glucanotransferase
1585	 65.15	0	1484874..1485794	-	306	78213140	-	Syncc9605_1615	-	hypothetical protein
1586	 65.87	+1	1485785..1486537	-	250	78213141	-	Syncc9605_1616	-	ribosomal large subunit pseudouridine synthase B
1587	 63.57	0	1486534..1487664	-	376	78213142	-	Syncc9605_1617	-	histidine kinase
1588	 59.87	0	1487672..1488436	-	254	78213143	-	Syncc9605_1618	-	two component transcriptional regulator
1589	 59.76	0	1488472..1488891	-	139	78213144	-	Syncc9605_1619	-	hypothetical protein
1590	 63.52	0	1488963..1490615	-	550	78213145	-	Syncc9605_1620	-	kinase
1591	 67.95	+1	1490660..1492066	+	468	78213146	-	Syncc9605_1621	-	arginine decarboxylase
1592	 62.03	0	1492113..1492586	+	157	78213147	-	Syncc9605_1622	-	rare lipoprotein A
1593	 64.01	0	1492617..1493483	+	288	78213148	-	Syncc9605_1623	-	putative phosphatidate cytidylyltransferase
1594	 62.96	0	1493490..1494110	-	206	78213149	-	Syncc9605_1624	-	hypothetical protein
1595	 63.55	0	1494103..1494969	-	288	78213150	-	Syncc9605_1625	-	putative 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
1596	 63.67	0	1494966..1496066	-	366	78213151	-	Syncc9605_1626	-	putative glycerol dehydrogenase
1597	 59.78	0	1496066..1498606	-	846	78213152	-	Syncc9605_1627	-	ATPase
1598	 65.50	0	1498780..1499295	-	171	78213153	-	Syncc9605_1628	-	ribosomal-protein-alanine acetyltransferase
1599	 63.77	0	1499299..1500678	+	459	78213154	-	Syncc9605_1629	-	diaminopimelate decarboxylase
1600	 62.45	0	1500701..1501531	+	276	78213155	-	Syncc9605_1630	-	hypothetical protein
1601	 63.73	0	1501528..1502310	+	260	78213156	-	Syncc9605_1631	-	undecaprenyl pyrophosphate synthetase
1602	 65.06	0	1502307..1503302	+	331	78213157	-	Syncc9605_1632	-	biotin synthase
1603	 60.56	0	1503358..1503783	+	141	78213158	-	Syncc9605_1633	-	hypothetical protein
1604	 56.80	0	1504311..1504685	+	124	78213159	-	Syncc9605_1634	-	hypothetical protein
1605	 61.89	0	1504753..1505736	+	327	78213160	-	Syncc9605_1635	-	rhodanese-like protein
1606	 65.64	0	1505785..1506756	+	323	78213161	-	Syncc9605_1636	-	glutathione S-transferase domain-containing protein
1607	 68.79	+1	1506767..1507285	+	172	78213162	-	Syncc9605_1637	-	hypothetical protein
1608	 66.78	+1	1507270..1508169	-	299	78213163	-	Syncc9605_1638	-	lipoyl synthase
1609	 62.73	0	1508166..1508825	-	219	78213164	-	Syncc9605_1639	-	DNA replication and repair protein RecR
1610	 63.23	0	1508849..1509430	+	193	78213165	-	Syncc9605_1640	-	putative photosystem II oxygen-evolving complex 23K protein PsbP
1611	 62.54	0	1509431..1510375	-	314	78213166	-	Syncc9605_1641	-	cell envelope-related function transcriptional attenuator
1612	 65.24	0	1510442..1512541	-	699	78213167	-	Syncc9605_1642	-	CPA2 family Na(+)/H(+) antiporter
1613	 63.73	0	1512604..1514409	-	601	78213168	-	Syncc9605_1643	-	ATPase
1614	 62.05	0	1514463..1514657	+	64	78213169	-	Syncc9605_1644	-	hypothetical protein
1615	 62.85	0	1514661..1514948	-	95	78213170	-	Syncc9605_1645	-	RNA recognition motif-containing protein
1616	 56.92	0	1515146..1515340	+	64	78213171	-	Syncc9605_1646	-	hypothetical protein
1617	 63.05	0	1515360..1515608	-	82	78213172	-	Syncc9605_1647	-	hypothetical protein
1618	 62.28	0	1515608..1517431	-	607	78213173	-	Syncc9605_1648	-	DEAD/DEAH box helicase-like
1619	 60.82	0	1517494..1517835	-	113	78213174	-	Syncc9605_1649	-	mannose-6-phosphate isomerase WbpW-like
1620	 67.30	+1	1517849..1519429	-	526	78213175	-	Syncc9605_1650	-	DNA helicase/exodeoxyribonuclease V, alpha subunit
1621	 66.67	+1	1519426..1523106	-	1226	78213176	-	Syncc9605_1651	-	DNA helicase/exodeoxyribonuclease V, beta subunit
1622	 59.01	0	1523253..1523474	+	73	78213177	-	Syncc9605_1652	-	hypothetical protein
1623	 67.34	+1	1523471..1526716	-	1081	78213178	-	Syncc9605_1653	-	DNA helicase/exodeoxyribonuclease V, gamma subunit
1624	 63.29	0	1526710..1527330	-	206	78213179	-	Syncc9605_1654	-	serine/threonine specific protein phosphatase
1625	 61.31	0	1527398..1527733	-	111	78213180	-	Syncc9605_1655	-	hypothetical protein
1626	 60.12	0	1527733..1528053	-	106	78213181	-	Syncc9605_1656	-	hypothetical protein
1627	 63.33	0	1528050..1528799	-	249	78213182	-	Syncc9605_1657	-	pyridoxal phosphate biosynthetic protein PdxJ
1628	 64.15	0	1528826..1529581	+	251	78213183	-	Syncc9605_1658	-	phospholipid/glycerol acyltransferase
1629	 63.35	0	1529625..1530137	+	170	78213184	-	Syncc9605_1659	-	hypothetical protein
1630	 59.44	0	1530186..1530434	+	82	78213185	-	Syncc9605_1660	-	BolA family protein
1631	 50.93	-1	1530455..1530778	+	107	78213186	-	Syncc9605_1661	-	glutaredoxin-like protein
1632	 56.03	0	1530780..1531061	-	93	78213187	-	Syncc9605_1662	-	hypothetical protein
1633	 65.89	+1	1531127..1531894	+	255	78213188	-	Syncc9605_1663	-	two component transcriptional regulator
1634	 49.44	-1	1532982..1533341	+	119	78213189	-	Syncc9605_1664	-	hypothetical protein
1635	 57.82	0	1533375..1533668	+	97	78213190	-	Syncc9605_1665	-	hypothetical protein
1636	 47.92	-1	1533848..1534135	+	95	78213191	-	Syncc9605_1666	-	hypothetical protein
1637	 56.49	0	1534449..1534733	+	94	78213192	-	Syncc9605_1667	-	hypothetical protein
1638	 58.33	0	1535097..1536224	+	375	78213193	-	Syncc9605_1668	-	hypothetical protein
1639	 61.90	0	1536298..1536528	+	76	78213194	-	Syncc9605_1669	-	hypothetical protein
1640	 54.86	0	1536635..1536922	-	95	78213195	-	Syncc9605_1670	-	hypothetical protein
1641	 53.91	0	1537130..1537372	-	80	78213196	-	Syncc9605_1671	-	hypothetical protein
1642	 59.06	0	1537649..1538200	-	183	78213197	-	Syncc9605_1672	-	hypothetical protein
1643	 58.39	0	1538729..1539139	-	136	78213198	-	Syncc9605_1673	-	hypothetical protein
1644	 57.84	0	1539143..1539346	-	67	78213199	-	Syncc9605_1674	-	hypothetical protein
1645	 57.44	0	1539367..1539756	+	129	78213200	-	Syncc9605_1675	-	hypothetical protein
1646	 60.14	0	1539790..1540080	+	96	78213201	-	Syncc9605_1676	-	hypothetical protein
1647	 56.60	0	1540195..1540512	+	105	78213202	-	Syncc9605_1677	-	hypothetical protein
1648	 61.93	0	1540650..1541135	+	161	78213203	-	Syncc9605_1678	-	hypothetical protein
1649	 62.34	0	1541219..1541773	-	184	78213204	-	Syncc9605_1679	-	hypothetical protein
1650	 58.95	0	1541770..1542054	-	94	78213205	-	Syncc9605_1680	-	hypothetical protein
1651	 62.30	0	1542090..1543646	-	518	78213206	-	Syncc9605_1681	-	carotenoid isomerase
1652	 63.24	0	1543670..1543873	-	67	78213207	-	Syncc9605_1682	-	CDF family cation efflux system protein
1653	 69.05	+1	1543919..1544086	-	55	78213208	-	Syncc9605_1683	-	CDF family cation efflux system protein
1654	 66.67	+1	1544159..1544383	-	74	78213209	-	Syncc9605_1684	-	CDF family cation efflux system protein
1655	 64.29	0	1544384..1544635	-	83	78213210	-	Syncc9605_1685	-	CDF family cation efflux system protein
1656	 63.82	0	1544632..1546002	-	456	78213211	-	Syncc9605_1686	-	tRNA (uracil-5-)-methyltransferase Gid
1657	 61.50	0	1546050..1546262	-	70	78213212	-	Syncc9605_1687	-	hypothetical protein
1658	 65.30	0	1546366..1546878	-	170	78213213	-	Syncc9605_1688	-	carbonic anhydrase
1659	 63.50	0	1547226..1548392	+	388	78213214	-	Syncc9605_1689	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.