IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1521	 56.02	0	1428587..1428802	+	71	78213076	-	Syncc9605_1551	-	hypothetical protein
1522	 53.85	0	1429870..1430259	+	129	78213077	-	Syncc9605_1552	-	hypothetical protein
1523	 53.33	0	1430302..1430556	-	84	78213078	-	Syncc9605_1553	-	hypothetical protein
1524	 48.61	-1	1430549..1430836	-	95	78213079	-	Syncc9605_1554	-	hypothetical protein
1525	 62.84	0	1431372..1431554	+	60	78213080	-	Syncc9605_1555	-	hypothetical protein
1526	 52.33	-1	1431730..1432008	-	92	78213081	-	Syncc9605_1556	-	hypothetical protein
1527	 56.63	0	1431986..1432294	-	102	78213082	-	Syncc9605_1557	-	hypothetical protein
1528	 55.99	0	1432988..1433446	+	152	78213083	-	Syncc9605_1558	-	hypothetical protein
1529	 67.01	+1	1433488..1435260	+	590	78213084	-	Syncc9605_1559	-	gamma-glutamyltransferase
1530	 59.78	0	1435277..1435741	-	154	78213085	-	Syncc9605_1560	-	hypothetical protein
1531	 62.44	0	1435838..1436713	+	291	78213086	-	Syncc9605_1561	-	putative ribosomal-protein-alanine acetyltransferase
1532	 64.85	0	1436737..1436901	-	54	78213087	-	Syncc9605_1562	-	hypothetical protein
1533	 53.81	0	1437435..1437854	-	139	78213088	-	Syncc9605_1563	-	hypothetical protein
1534	 57.41	0	1438023..1438238	+	71	78213089	-	Syncc9605_1564	-	hypothetical protein
1535	 53.33	0	1438932..1439111	-	59	78213090	-	Syncc9605_1565	-	hypothetical protein
1536	 54.44	0	1439117..1439386	-	89	78213091	-	Syncc9605_1566	-	hypothetical protein
1537	 58.85	0	1439537..1440316	+	259	78213092	-	Syncc9605_1567	-	hypothetical protein
1538	 59.44	0	1440322..1441137	+	271	78213093	-	Syncc9605_1568	-	hypothetical protein
1539	 59.07	0	1441137..1441847	+	236	78213094	-	Syncc9605_1569	-	hypothetical protein
1540	 58.98	0	1441964..1443082	+	372	78213095	-	Syncc9605_1570	-	hypothetical protein
1541	 58.91	0	1443341..1443598	+	85	78213096	-	Syncc9605_1571	-	hypothetical protein
1542	 56.31	0	1443603..1443824	+	73	78213097	-	Syncc9605_1572	-	hypothetical protein
1543	 59.30	0	1443821..1444105	+	94	78213098	-	Syncc9605_1573	-	hypothetical protein
1544	 38.54	-2	1444972..1445547	+	191	78213099	-	Syncc9605_1574	-	CRP/FNR family transcriptional regulator
1545	 56.70	0	1445936..1447480	+	514	78213100	-	Syncc9605_1575	-	porin
1546	 48.00	-1	1447576..1447800	-	74	78213101	-	Syncc9605_1576	-	hypothetical protein
1547	 47.53	-1	1447878..1448546	-	222	78213102	-	Syncc9605_1577	-	putative hydroxylase
1548	 44.38	-2	1448661..1449665	+	334	78213103	-	Syncc9605_1578	-	putative iron ABC transporter, substrate binding protein
1549	 49.57	-1	1449810..1450394	+	194	78213104	-	Syncc9605_1579	-	ferritin
1550	 42.70	-2	1450878..1451144	+	88	78213105	-	Syncc9605_1580	-	ferredoxin (2Fe-2S)
1551	 35.77	-2	1451138..1451383	+	81	78213106	-	Syncc9605_1581	-	hypothetical protein
1552	 38.41	-2	1451475..1452242	+	255	78213107	-	Syncc9605_1582	-	hypothetical protein
1553	 42.62	-2	1452305..1453198	+	297	78213108	-	Syncc9605_1583	-	thioredoxin-disulfide reductase
1554	 45.10	-2	1453244..1453753	-	169	78213109	-	Syncc9605_1584	-	flavodoxin FldA
1555	 42.27	-2	1454342..1454632	-	96	78213110	-	Syncc9605_1585	-	hypothetical protein
1556	 54.83	0	1454629..1455177	-	182	78213111	-	Syncc9605_1586	-	cAMP family transcriptional regulator
1557	 43.78	-2	1457775..1457975	+	66	78213112	rpmG	Syncc9605_1587	-	50S ribosomal protein L33
1558	 43.78	-2	1459383..1460081	+	232	78213113	-	Syncc9605_1588	-	hypothetical protein
1559	 37.92	-2	1460307..1460546	+	79	78213114	-	Syncc9605_1589	-	hypothetical protein
1560	 50.39	-1	1460643..1461680	+	345	78213115	-	Syncc9605_1590	-	chlorophyll a/b binding light harvesting protein PcbD
1561	 60.24	0	1461868..1463454	-	528	78213116	-	Syncc9605_1591	-	porin
1562	 64.61	0	1463533..1464165	-	210	78213117	-	Syncc9605_1592	-	putative hydrogenase accessory protein
1563	 64.29	0	1464350..1464601	-	83	78213118	-	Syncc9605_1593	-	hypothetical protein
1564	 61.81	0	1464598..1464906	-	102	78213119	-	Syncc9605_1594	-	hypothetical protein
1565	 62.98	0	1464941..1465645	-	234	78213120	-	Syncc9605_1595	-	hypothetical protein
1566	 59.80	0	1465727..1466032	-	101	78213121	-	Syncc9605_1596	-	hypothetical protein
1567	 58.93	0	1466143..1466646	+	167	78213122	-	Syncc9605_1597	-	hypothetical protein
1568	 59.74	0	1466727..1467029	-	100	78213123	-	Syncc9605_1598	-	hypothetical protein
1569	 66.31	+1	1467036..1470683	-	1215	78213124	-	Syncc9605_1599	-	5-oxoprolinase (ATP-hydrolyzing)
1570	 64.47	0	1470803..1471759	+	318	78213125	-	Syncc9605_1600	-	permease
1571	 63.61	0	1471773..1472426	+	217	78213126	-	Syncc9605_1601	-	hypothetical protein
1572	 64.78	0	1472423..1473745	+	440	78213127	-	Syncc9605_1602	-	hypothetical protein
1573	 52.64	-1	1473823..1474941	-	372	78213128	-	Syncc9605_1603	-	hypothetical protein
1574	 54.15	0	1475150..1476076	-	308	78213129	-	Syncc9605_1604	-	ABC transporter substrate-binding protein
1575	 58.08	0	1476174..1476860	+	228	78213130	-	Syncc9605_1605	-	ATPase
1576	 57.79	0	1476853..1477629	+	258	78213131	-	Syncc9605_1606	-	ABC transporter
1577	 46.41	-2	1477811..1478047	-	78	78213132	-	Syncc9605_1607	-	hypothetical protein
1578	 49.48	-1	1478272..1478463	-	63	78213133	-	Syncc9605_1608	-	hypothetical protein
1579	 60.27	0	1478500..1479672	-	390	78213134	-	Syncc9605_1609	-	hypothetical protein
1580	 63.45	0	1479750..1480745	-	331	78213135	-	Syncc9605_1610	-	ribose-phosphate pyrophosphokinase
1581	 69.06	+1	1480802..1481302	+	166	78213136	-	Syncc9605_1611	-	hypothetical protein
1582	 63.99	0	1481299..1482231	-	310	78213137	-	Syncc9605_1612	-	cell envelope-related function transcriptional attenuator
1583	 63.65	0	1482311..1483339	+	342	78213138	-	Syncc9605_1613	-	hypothetical protein
1584	 64.31	0	1483372..1484940	+	522	78213139	-	Syncc9605_1614	-	4-alpha-glucanotransferase
1585	 65.15	0	1484874..1485794	-	306	78213140	-	Syncc9605_1615	-	hypothetical protein
1586	 65.87	+1	1485785..1486537	-	250	78213141	-	Syncc9605_1616	-	ribosomal large subunit pseudouridine synthase B
1587	 63.57	0	1486534..1487664	-	376	78213142	-	Syncc9605_1617	-	histidine kinase
1588	 59.87	0	1487672..1488436	-	254	78213143	-	Syncc9605_1618	-	two component transcriptional regulator
1589	 59.76	0	1488472..1488891	-	139	78213144	-	Syncc9605_1619	-	hypothetical protein
1590	 63.52	0	1488963..1490615	-	550	78213145	-	Syncc9605_1620	-	kinase
1591	 67.95	+1	1490660..1492066	+	468	78213146	-	Syncc9605_1621	-	arginine decarboxylase
1592	 62.03	0	1492113..1492586	+	157	78213147	-	Syncc9605_1622	-	rare lipoprotein A
1593	 64.01	0	1492617..1493483	+	288	78213148	-	Syncc9605_1623	-	putative phosphatidate cytidylyltransferase
1594	 62.96	0	1493490..1494110	-	206	78213149	-	Syncc9605_1624	-	hypothetical protein
1595	 63.55	0	1494103..1494969	-	288	78213150	-	Syncc9605_1625	-	putative 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
1596	 63.67	0	1494966..1496066	-	366	78213151	-	Syncc9605_1626	-	putative glycerol dehydrogenase
1597	 59.78	0	1496066..1498606	-	846	78213152	-	Syncc9605_1627	-	ATPase
1598	 65.50	0	1498780..1499295	-	171	78213153	-	Syncc9605_1628	-	ribosomal-protein-alanine acetyltransferase
1599	 63.77	0	1499299..1500678	+	459	78213154	-	Syncc9605_1629	-	diaminopimelate decarboxylase
1600	 62.45	0	1500701..1501531	+	276	78213155	-	Syncc9605_1630	-	hypothetical protein
1601	 63.73	0	1501528..1502310	+	260	78213156	-	Syncc9605_1631	-	undecaprenyl pyrophosphate synthetase
1602	 65.06	0	1502307..1503302	+	331	78213157	-	Syncc9605_1632	-	biotin synthase
1603	 60.56	0	1503358..1503783	+	141	78213158	-	Syncc9605_1633	-	hypothetical protein
1604	 56.80	0	1504311..1504685	+	124	78213159	-	Syncc9605_1634	-	hypothetical protein
1605	 61.89	0	1504753..1505736	+	327	78213160	-	Syncc9605_1635	-	rhodanese-like protein
1606	 65.64	0	1505785..1506756	+	323	78213161	-	Syncc9605_1636	-	glutathione S-transferase domain-containing protein
1607	 68.79	+1	1506767..1507285	+	172	78213162	-	Syncc9605_1637	-	hypothetical protein
1608	 66.78	+1	1507270..1508169	-	299	78213163	-	Syncc9605_1638	-	lipoyl synthase
1609	 62.73	0	1508166..1508825	-	219	78213164	-	Syncc9605_1639	-	DNA replication and repair protein RecR
1610	 63.23	0	1508849..1509430	+	193	78213165	-	Syncc9605_1640	-	putative photosystem II oxygen-evolving complex 23K protein PsbP
1611	 62.54	0	1509431..1510375	-	314	78213166	-	Syncc9605_1641	-	cell envelope-related function transcriptional attenuator
1612	 65.24	0	1510442..1512541	-	699	78213167	-	Syncc9605_1642	-	CPA2 family Na(+)/H(+) antiporter
1613	 63.73	0	1512604..1514409	-	601	78213168	-	Syncc9605_1643	-	ATPase
1614	 62.05	0	1514463..1514657	+	64	78213169	-	Syncc9605_1644	-	hypothetical protein
1615	 62.85	0	1514661..1514948	-	95	78213170	-	Syncc9605_1645	-	RNA recognition motif-containing protein
1616	 56.92	0	1515146..1515340	+	64	78213171	-	Syncc9605_1646	-	hypothetical protein
1617	 63.05	0	1515360..1515608	-	82	78213172	-	Syncc9605_1647	-	hypothetical protein
1618	 62.28	0	1515608..1517431	-	607	78213173	-	Syncc9605_1648	-	DEAD/DEAH box helicase-like
1619	 60.82	0	1517494..1517835	-	113	78213174	-	Syncc9605_1649	-	mannose-6-phosphate isomerase WbpW-like
1620	 67.30	+1	1517849..1519429	-	526	78213175	-	Syncc9605_1650	-	DNA helicase/exodeoxyribonuclease V, alpha subunit
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.