IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1469	 55.15	0	1393780..1394109	+	109	78213024	-	Syncc9605_1498	-	hypothetical protein
1470	 59.37	0	1394122..1394436	-	104	78213025	-	Syncc9605_1499	-	hypothetical protein
1471	 62.53	0	1394490..1394876	+	128	78213026	-	Syncc9605_1500	-	hypothetical protein
1472	 61.18	0	1395010..1395246	+	78	78213027	-	Syncc9605_1501	-	hypothetical protein
1473	 54.42	0	1395231..1395524	-	97	78213028	-	Syncc9605_1502	-	hypothetical protein
1474	 59.35	0	1395839..1396699	-	286	78213029	-	Syncc9605_1503	-	hypothetical protein
1475	 62.96	0	1396765..1397169	+	134	78213030	-	Syncc9605_1504	-	hypothetical protein
1476	 60.17	0	1397187..1397540	-	117	78213031	-	Syncc9605_1505	-	hypothetical protein
1477	 56.96	0	1398031..1398267	-	78	78213032	-	Syncc9605_1506	-	hypothetical protein
1478	 64.06	0	1398353..1398889	+	178	78213033	-	Syncc9605_1507	-	superoxide dismutase precursor (Cu-Zn)
1479	 62.22	0	1399101..1399280	-	59	78213034	-	Syncc9605_1508	-	hypothetical protein
1480	 54.31	0	1399369..1399635	+	88	78213035	-	Syncc9605_1509	-	hypothetical protein
1481	 58.94	0	1399660..1399905	-	81	78213036	-	Syncc9605_1510	-	RNA recognition motif-containing protein
1482	 60.92	0	1400098..1400271	+	57	78213037	-	Syncc9605_1511	-	hypothetical protein
1483	 62.23	0	1400268..1401461	-	397	78213038	-	Syncc9605_1512	-	glycosyl transferase family protein
1484	 58.81	0	1401492..1401809	-	105	78213039	-	Syncc9605_1513	-	hypothetical protein
1485	 64.46	0	1402958..1403500	-	180	78213040	-	Syncc9605_1515	-	hypothetical protein
1486	 63.68	0	1403497..1405170	-	557	78213041	-	Syncc9605_1516	-	hypothetical protein
1487	 61.33	0	1405279..1405428	+	49	78213042	-	Syncc9605_1517	-	hypothetical protein
1488	 60.78	0	1405871..1406074	-	67	78213043	-	Syncc9605_1518	-	hypothetical protein
1489	 57.41	0	1406171..1406332	+	53	78213044	-	Syncc9605_1519	-	hypothetical protein
1490	 64.10	0	1406444..1406872	+	142	78213045	-	Syncc9605_1520	-	hypothetical protein
1491	 56.44	0	1406858..1407160	-	100	78213046	-	Syncc9605_1521	-	hypothetical protein
1492	 56.38	0	1407275..1407517	+	80	78213047	-	Syncc9605_1522	-	hypothetical protein
1493	 55.95	0	1407633..1407800	-	55	78213048	-	Syncc9605_1523	-	hypothetical protein
1494	 51.04	-1	1407849..1408040	-	63	78213049	-	Syncc9605_1524	-	hypothetical protein
1495	 53.23	0	1408112..1408498	-	128	78213050	-	Syncc9605_1525	-	hypothetical protein
1496	 55.91	0	1408689..1408874	+	61	78213051	-	Syncc9605_1526	-	hypothetical protein
1497	 60.09	0	1409043..1409498	+	151	78213052	-	Syncc9605_1527	-	hypothetical protein
1498	 58.78	0	1409517..1409795	-	92	78213053	-	Syncc9605_1528	-	hypothetical protein
1499	 65.29	0	1409857..1411095	+	412	78213054	-	Syncc9605_1529	-	cytochrome P450 family protein
1500	 65.49	0	1411077..1411331	-	84	78213055	-	Syncc9605_1530	-	hypothetical protein
1501	 58.67	0	1411397..1411621	-	74	78213056	-	Syncc9605_1531	-	hypothetical protein
1502	 65.19	0	1411634..1412242	-	202	78213057	-	Syncc9605_1532	-	hypothetical protein
1503	 47.56	-1	1412314..1412559	-	81	78213058	-	Syncc9605_1533	-	hypothetical protein
1504	 57.73	0	1412687..1413559	-	290	78213059	-	Syncc9605_1534	-	phycobilisome linker polypeptide
1505	 63.64	0	1413759..1413857	-	32	78213060	-	Syncc9605_1535	-	phosphate-binding protein
1506	 65.73	+1	1414287..1414715	-	142	78213061	-	Syncc9605_1536	-	response regulator receiver domain-containing protein
1507	 60.85	0	1415152..1415409	+	85	78213062	-	Syncc9605_1537	-	superfamily I DNA/RNA helicase
1508	 57.78	0	1415406..1415765	+	119	78213063	-	Syncc9605_1538	-	hypothetical protein
1509	 63.26	0	1415809..1416072	+	87	78213064	-	Syncc9605_1539	-	hypothetical protein
1510	 54.69	0	1417198..1417389	+	63	78213065	-	Syncc9605_1540	-	hypothetical protein
1511	 53.93	0	1417375..1417641	-	88	78213066	-	Syncc9605_1541	-	hypothetical protein
1512	 56.39	0	1417660..1418574	-	304	78213067	-	Syncc9605_1542	-	hypothetical protein
1513	 58.75	0	1418617..1420005	-	462	78213068	-	Syncc9605_1543	-	nucleotide binding protein, PINc
1514	 58.97	0	1420932..1421243	+	103	78213069	-	Syncc9605_1544	-	hypothetical protein
1515	 57.09	0	1422507..1422767	+	86	78213070	-	Syncc9605_1545	-	hypothetical protein
1516	 53.73	0	1423226..1423480	-	84	78213071	-	Syncc9605_1546	-	hypothetical protein
1517	 55.78	0	1424072..1424374	+	100	78213072	-	Syncc9605_1547	-	hypothetical protein
1518	 55.82	0	1425389..1425637	-	82	78213073	-	Syncc9605_1548	-	hypothetical protein
1519	 54.37	0	1425784..1426035	-	83	78213074	-	Syncc9605_1549	-	hypothetical protein
1520	 48.89	-1	1427917..1428411	-	164	78213075	-	Syncc9605_1550	-	hypothetical protein
1521	 56.02	0	1428587..1428802	+	71	78213076	-	Syncc9605_1551	-	hypothetical protein
1522	 53.85	0	1429870..1430259	+	129	78213077	-	Syncc9605_1552	-	hypothetical protein
1523	 53.33	0	1430302..1430556	-	84	78213078	-	Syncc9605_1553	-	hypothetical protein
1524	 48.61	-1	1430549..1430836	-	95	78213079	-	Syncc9605_1554	-	hypothetical protein
1525	 62.84	0	1431372..1431554	+	60	78213080	-	Syncc9605_1555	-	hypothetical protein
1526	 52.33	-1	1431730..1432008	-	92	78213081	-	Syncc9605_1556	-	hypothetical protein
1527	 56.63	0	1431986..1432294	-	102	78213082	-	Syncc9605_1557	-	hypothetical protein
1528	 55.99	0	1432988..1433446	+	152	78213083	-	Syncc9605_1558	-	hypothetical protein
1529	 67.01	+1	1433488..1435260	+	590	78213084	-	Syncc9605_1559	-	gamma-glutamyltransferase
1530	 59.78	0	1435277..1435741	-	154	78213085	-	Syncc9605_1560	-	hypothetical protein
1531	 62.44	0	1435838..1436713	+	291	78213086	-	Syncc9605_1561	-	putative ribosomal-protein-alanine acetyltransferase
1532	 64.85	0	1436737..1436901	-	54	78213087	-	Syncc9605_1562	-	hypothetical protein
1533	 53.81	0	1437435..1437854	-	139	78213088	-	Syncc9605_1563	-	hypothetical protein
1534	 57.41	0	1438023..1438238	+	71	78213089	-	Syncc9605_1564	-	hypothetical protein
1535	 53.33	0	1438932..1439111	-	59	78213090	-	Syncc9605_1565	-	hypothetical protein
1536	 54.44	0	1439117..1439386	-	89	78213091	-	Syncc9605_1566	-	hypothetical protein
1537	 58.85	0	1439537..1440316	+	259	78213092	-	Syncc9605_1567	-	hypothetical protein
1538	 59.44	0	1440322..1441137	+	271	78213093	-	Syncc9605_1568	-	hypothetical protein
1539	 59.07	0	1441137..1441847	+	236	78213094	-	Syncc9605_1569	-	hypothetical protein
1540	 58.98	0	1441964..1443082	+	372	78213095	-	Syncc9605_1570	-	hypothetical protein
1541	 58.91	0	1443341..1443598	+	85	78213096	-	Syncc9605_1571	-	hypothetical protein
1542	 56.31	0	1443603..1443824	+	73	78213097	-	Syncc9605_1572	-	hypothetical protein
1543	 59.30	0	1443821..1444105	+	94	78213098	-	Syncc9605_1573	-	hypothetical protein
1544	 38.54	-2	1444972..1445547	+	191	78213099	-	Syncc9605_1574	-	CRP/FNR family transcriptional regulator
1545	 56.70	0	1445936..1447480	+	514	78213100	-	Syncc9605_1575	-	porin
1546	 48.00	-1	1447576..1447800	-	74	78213101	-	Syncc9605_1576	-	hypothetical protein
1547	 47.53	-1	1447878..1448546	-	222	78213102	-	Syncc9605_1577	-	putative hydroxylase
1548	 44.38	-2	1448661..1449665	+	334	78213103	-	Syncc9605_1578	-	putative iron ABC transporter, substrate binding protein
1549	 49.57	-1	1449810..1450394	+	194	78213104	-	Syncc9605_1579	-	ferritin
1550	 42.70	-2	1450878..1451144	+	88	78213105	-	Syncc9605_1580	-	ferredoxin (2Fe-2S)
1551	 35.77	-2	1451138..1451383	+	81	78213106	-	Syncc9605_1581	-	hypothetical protein
1552	 38.41	-2	1451475..1452242	+	255	78213107	-	Syncc9605_1582	-	hypothetical protein
1553	 42.62	-2	1452305..1453198	+	297	78213108	-	Syncc9605_1583	-	thioredoxin-disulfide reductase
1554	 45.10	-2	1453244..1453753	-	169	78213109	-	Syncc9605_1584	-	flavodoxin FldA
1555	 42.27	-2	1454342..1454632	-	96	78213110	-	Syncc9605_1585	-	hypothetical protein
1556	 54.83	0	1454629..1455177	-	182	78213111	-	Syncc9605_1586	-	cAMP family transcriptional regulator
1557	 43.78	-2	1457775..1457975	+	66	78213112	rpmG	Syncc9605_1587	-	50S ribosomal protein L33
1558	 43.78	-2	1459383..1460081	+	232	78213113	-	Syncc9605_1588	-	hypothetical protein
1559	 37.92	-2	1460307..1460546	+	79	78213114	-	Syncc9605_1589	-	hypothetical protein
1560	 50.39	-1	1460643..1461680	+	345	78213115	-	Syncc9605_1590	-	chlorophyll a/b binding light harvesting protein PcbD
1561	 60.24	0	1461868..1463454	-	528	78213116	-	Syncc9605_1591	-	porin
1562	 64.61	0	1463533..1464165	-	210	78213117	-	Syncc9605_1592	-	putative hydrogenase accessory protein
1563	 64.29	0	1464350..1464601	-	83	78213118	-	Syncc9605_1593	-	hypothetical protein
1564	 61.81	0	1464598..1464906	-	102	78213119	-	Syncc9605_1594	-	hypothetical protein
1565	 62.98	0	1464941..1465645	-	234	78213120	-	Syncc9605_1595	-	hypothetical protein
1566	 59.80	0	1465727..1466032	-	101	78213121	-	Syncc9605_1596	-	hypothetical protein
1567	 58.93	0	1466143..1466646	+	167	78213122	-	Syncc9605_1597	-	hypothetical protein
1568	 59.74	0	1466727..1467029	-	100	78213123	-	Syncc9605_1598	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.