IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1415	 57.38	0	1352341..1352997	-	218	78212970	-	Syncc9605_1440	-	ATP-dependent Clp protease proteolytic subunit
1416	 58.18	0	1353016..1353663	+	215	78212971	-	Syncc9605_1441	-	Thf1-like protein
1417	 60.95	0	1353645..1354886	-	413	78212972	-	Syncc9605_1442	-	hypothetical protein
1418	 53.92	0	1355112..1355213	-	33	78212973	-	Syncc9605_1443	-	cytochrome b6-f complex subunit PetN
1419	 60.61	0	1355286..1355582	+	98	78212974	clpS	Syncc9605_1444	-	ATP-dependent Clp protease adaptor
1420	 64.91	0	1355584..1355811	-	75	78212975	-	Syncc9605_1445	-	hypothetical protein
1421	 61.96	0	1355886..1356161	+	91	78212976	-	Syncc9605_1446	-	hypothetical protein
1422	 48.26	-1	1357341..1357742	-	133	78212977	-	Syncc9605_1447	-	hypothetical protein
1423	 63.39	0	1358436..1359596	-	386	78212978	-	Syncc9605_1448	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1424	 60.94	0	1359649..1360521	-	290	78212979	-	Syncc9605_1449	-	lactose transport system permease protein
1425	 62.90	0	1360583..1361698	+	371	78212980	-	Syncc9605_1450	-	3-dehydroquinate synthase
1426	 63.67	0	1361652..1362884	-	410	78212981	-	Syncc9605_1451	-	hypothetical protein
1427	 62.39	0	1362922..1363692	+	256	78212982	-	Syncc9605_1452	-	hypothetical protein
1428	 61.67	0	1363721..1364440	-	239	78212983	-	Syncc9605_1453	-	muramidase
1429	 63.44	0	1364648..1365733	-	361	78212984	-	Syncc9605_1454	-	hypothetical protein
1430	 64.92	0	1365727..1366584	-	285	78212985	-	Syncc9605_1455	-	putative transcripton factor
1431	 59.81	0	1366629..1367561	+	310	78212986	-	Syncc9605_1456	-	quinolinate synthetase
1432	 54.79	0	1367558..1367860	+	100	78212987	-	Syncc9605_1457	-	hypothetical protein
1433	 56.76	0	1367905..1368318	+	137	78212988	-	Syncc9605_1458	-	hypothetical protein
1434	 55.98	0	1368319..1368552	-	77	78212989	-	Syncc9605_1459	-	hypothetical protein
1435	 63.73	0	1368620..1369606	+	328	78212990	-	Syncc9605_1460	-	exonuclease involved in mRNA processing
1436	 58.62	0	1369603..1369863	-	86	78212991	-	Syncc9605_1461	-	hypothetical protein
1437	 60.99	0	1369982..1371637	+	551	161353760	-	Syncc9605_1462	-	ATP-dependent DNA ligase
1438	 61.30	0	1371637..1374132	+	831	78212993	-	Syncc9605_1463	-	DEAD/DEAH box helicase-like
1439	 53.75	0	1375327..1375566	+	79	78212994	-	Syncc9605_1466	-	hypothetical protein
1440	 56.74	0	1375583..1375864	+	93	78212995	-	Syncc9605_1467	-	hypothetical protein
1441	 60.90	0	1375889..1376287	+	132	78212996	-	Syncc9605_1468	-	hypothetical protein
1442	 58.61	0	1376284..1376829	+	181	78212997	-	Syncc9605_1469	-	hypothetical protein
1443	 59.16	0	1377078..1377410	+	110	78212998	-	Syncc9605_1470	-	hypothetical protein
1444	 50.98	-1	1377428..1377682	+	84	78212999	-	Syncc9605_1471	-	hypothetical protein
1445	 56.85	0	1377984..1378370	-	128	78213000	-	Syncc9605_1472	-	hypothetical protein
1446	 62.04	0	1378591..1378806	-	71	78213001	-	Syncc9605_1473	-	heat shock protein DnaJ-like
1447	 60.12	0	1379920..1380576	-	218	78213002	-	Syncc9605_1476	-	hypothetical protein
1448	 61.71	0	1380580..1380801	-	73	78213003	-	Syncc9605_1477	-	high light inducible protein
1449	 64.01	0	1380798..1381211	-	137	78213004	-	Syncc9605_1478	-	hypothetical protein
1450	 58.06	0	1381358..1381543	+	61	78213005	-	Syncc9605_1479	-	hypothetical protein
1451	 68.23	+1	1381527..1381718	-	63	78213006	-	Syncc9605_1480	-	hypothetical protein
1452	 65.26	0	1381757..1382254	+	165	78213007	-	Syncc9605_1481	-	hypothetical protein
1453	 63.43	0	1382251..1382682	+	143	78213008	-	Syncc9605_1482	-	NUDIX family protein
1454	 61.22	0	1382672..1383460	+	262	78213009	-	Syncc9605_1483	-	ATPase
1455	 59.20	0	1383516..1383716	+	66	78213010	-	Syncc9605_1484	-	hypothetical protein
1456	 61.09	0	1383918..1384742	-	274	78213011	-	Syncc9605_1485	-	ABC transporter
1457	 64.84	0	1384775..1386139	+	454	78213012	-	Syncc9605_1486	-	phospholipid/glycerol acyltransferase
1458	 61.51	0	1386140..1386895	-	251	78213013	-	Syncc9605_1487	-	ATPase
1459	 61.24	0	1386895..1387908	-	337	78213014	-	Syncc9605_1488	-	ABC transporter substrate-binding protein
1460	 64.22	0	1387961..1388614	+	217	78213015	-	Syncc9605_1489	-	endonuclease III
1461	 57.19	0	1388615..1388899	-	94	78213016	-	Syncc9605_1490	-	ferredoxin (2Fe-2S)
1462	 60.48	0	1389295..1389504	+	69	78213017	-	Syncc9605_1491	-	hypothetical protein
1463	 54.17	0	1389729..1389992	+	87	78213018	-	Syncc9605_1492	-	hypothetical protein
1464	 60.91	0	1390404..1390994	-	196	78213019	-	Syncc9605_1493	-	uridine kinase
1465	 63.17	0	1391090..1391404	+	104	78213020	-	Syncc9605_1494	-	hypothetical protein
1466	 60.39	0	1391483..1392853	+	456	78213021	-	Syncc9605_1495	-	putative hydrolase transmembrane protein
1467	 59.63	0	1392997..1393266	+	89	78213022	-	Syncc9605_1496	-	hypothetical protein
1468	 58.33	0	1393330..1393713	-	127	78213023	-	Syncc9605_1497	-	hypothetical protein
1469	 55.15	0	1393780..1394109	+	109	78213024	-	Syncc9605_1498	-	hypothetical protein
1470	 59.37	0	1394122..1394436	-	104	78213025	-	Syncc9605_1499	-	hypothetical protein
1471	 62.53	0	1394490..1394876	+	128	78213026	-	Syncc9605_1500	-	hypothetical protein
1472	 61.18	0	1395010..1395246	+	78	78213027	-	Syncc9605_1501	-	hypothetical protein
1473	 54.42	0	1395231..1395524	-	97	78213028	-	Syncc9605_1502	-	hypothetical protein
1474	 59.35	0	1395839..1396699	-	286	78213029	-	Syncc9605_1503	-	hypothetical protein
1475	 62.96	0	1396765..1397169	+	134	78213030	-	Syncc9605_1504	-	hypothetical protein
1476	 60.17	0	1397187..1397540	-	117	78213031	-	Syncc9605_1505	-	hypothetical protein
1477	 56.96	0	1398031..1398267	-	78	78213032	-	Syncc9605_1506	-	hypothetical protein
1478	 64.06	0	1398353..1398889	+	178	78213033	-	Syncc9605_1507	-	superoxide dismutase precursor (Cu-Zn)
1479	 62.22	0	1399101..1399280	-	59	78213034	-	Syncc9605_1508	-	hypothetical protein
1480	 54.31	0	1399369..1399635	+	88	78213035	-	Syncc9605_1509	-	hypothetical protein
1481	 58.94	0	1399660..1399905	-	81	78213036	-	Syncc9605_1510	-	RNA recognition motif-containing protein
1482	 60.92	0	1400098..1400271	+	57	78213037	-	Syncc9605_1511	-	hypothetical protein
1483	 62.23	0	1400268..1401461	-	397	78213038	-	Syncc9605_1512	-	glycosyl transferase family protein
1484	 58.81	0	1401492..1401809	-	105	78213039	-	Syncc9605_1513	-	hypothetical protein
1485	 64.46	0	1402958..1403500	-	180	78213040	-	Syncc9605_1515	-	hypothetical protein
1486	 63.68	0	1403497..1405170	-	557	78213041	-	Syncc9605_1516	-	hypothetical protein
1487	 61.33	0	1405279..1405428	+	49	78213042	-	Syncc9605_1517	-	hypothetical protein
1488	 60.78	0	1405871..1406074	-	67	78213043	-	Syncc9605_1518	-	hypothetical protein
1489	 57.41	0	1406171..1406332	+	53	78213044	-	Syncc9605_1519	-	hypothetical protein
1490	 64.10	0	1406444..1406872	+	142	78213045	-	Syncc9605_1520	-	hypothetical protein
1491	 56.44	0	1406858..1407160	-	100	78213046	-	Syncc9605_1521	-	hypothetical protein
1492	 56.38	0	1407275..1407517	+	80	78213047	-	Syncc9605_1522	-	hypothetical protein
1493	 55.95	0	1407633..1407800	-	55	78213048	-	Syncc9605_1523	-	hypothetical protein
1494	 51.04	-1	1407849..1408040	-	63	78213049	-	Syncc9605_1524	-	hypothetical protein
1495	 53.23	0	1408112..1408498	-	128	78213050	-	Syncc9605_1525	-	hypothetical protein
1496	 55.91	0	1408689..1408874	+	61	78213051	-	Syncc9605_1526	-	hypothetical protein
1497	 60.09	0	1409043..1409498	+	151	78213052	-	Syncc9605_1527	-	hypothetical protein
1498	 58.78	0	1409517..1409795	-	92	78213053	-	Syncc9605_1528	-	hypothetical protein
1499	 65.29	0	1409857..1411095	+	412	78213054	-	Syncc9605_1529	-	cytochrome P450 family protein
1500	 65.49	0	1411077..1411331	-	84	78213055	-	Syncc9605_1530	-	hypothetical protein
1501	 58.67	0	1411397..1411621	-	74	78213056	-	Syncc9605_1531	-	hypothetical protein
1502	 65.19	0	1411634..1412242	-	202	78213057	-	Syncc9605_1532	-	hypothetical protein
1503	 47.56	-1	1412314..1412559	-	81	78213058	-	Syncc9605_1533	-	hypothetical protein
1504	 57.73	0	1412687..1413559	-	290	78213059	-	Syncc9605_1534	-	phycobilisome linker polypeptide
1505	 63.64	0	1413759..1413857	-	32	78213060	-	Syncc9605_1535	-	phosphate-binding protein
1506	 65.73	+1	1414287..1414715	-	142	78213061	-	Syncc9605_1536	-	response regulator receiver domain-containing protein
1507	 60.85	0	1415152..1415409	+	85	78213062	-	Syncc9605_1537	-	superfamily I DNA/RNA helicase
1508	 57.78	0	1415406..1415765	+	119	78213063	-	Syncc9605_1538	-	hypothetical protein
1509	 63.26	0	1415809..1416072	+	87	78213064	-	Syncc9605_1539	-	hypothetical protein
1510	 54.69	0	1417198..1417389	+	63	78213065	-	Syncc9605_1540	-	hypothetical protein
1511	 53.93	0	1417375..1417641	-	88	78213066	-	Syncc9605_1541	-	hypothetical protein
1512	 56.39	0	1417660..1418574	-	304	78213067	-	Syncc9605_1542	-	hypothetical protein
1513	 58.75	0	1418617..1420005	-	462	78213068	-	Syncc9605_1543	-	nucleotide binding protein, PINc
1514	 58.97	0	1420932..1421243	+	103	78213069	-	Syncc9605_1544	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.