IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1381	 61.14	0	1321005..1321565	+	186	78212936	-	Syncc9605_1406	-	twin-arginine translocation pathway signal
1382	 53.92	0	1321618..1323108	+	496	78212937	-	Syncc9605_1407	-	glucosylglycerol-phosphate synthase
1383	 62.24	0	1323105..1324370	+	421	78212938	-	Syncc9605_1408	-	ABC transporter, likely sugar solute binding protein
1384	 61.94	0	1324367..1325233	+	288	78212939	-	Syncc9605_1409	-	trehalose/maltose ABC transporter membrane protein
1385	 59.93	0	1325230..1326105	+	291	78212940	-	Syncc9605_1410	-	ABC transporter, likely for trehalose/maltose, membrane component
1386	 55.11	0	1326213..1327796	+	527	78212941	-	Syncc9605_1411	-	hypothetical protein
1387	 53.25	0	1327841..1328563	-	240	78212942	-	Syncc9605_1412	-	hypothetical protein
1388	 53.93	0	1328784..1329152	+	122	78212943	-	Syncc9605_1413	-	hypothetical protein
1389	 44.83	-2	1329295..1329555	-	86	78212944	-	Syncc9605_1414	-	hypothetical protein
1390	 53.54	0	1329796..1330374	+	192	78212945	-	Syncc9605_1415	-	hypothetical protein
1391	 37.55	-2	1330875..1331135	-	86	78212946	-	Syncc9605_1416	-	hypothetical protein
1392	 51.40	-1	1331257..1332756	-	499	78212947	-	Syncc9605_1417	-	hypothetical protein
1393	 46.48	-2	1332946..1333470	+	174	78212948	-	Syncc9605_1418	-	hypothetical protein
1394	 48.01	-1	1333476..1334177	+	233	78212949	-	Syncc9605_1419	-	hypothetical protein
1395	 42.32	-2	1334184..1334684	-	166	78212950	-	Syncc9605_1420	-	hypothetical protein
1396	 39.06	-2	1335727..1335918	-	63	78212951	-	Syncc9605_1421	-	hypothetical protein
1397	 42.59	-2	1335990..1336259	-	89	78212952	-	Syncc9605_1422	-	hypothetical protein
1398	 54.37	0	1337332..1337754	-	140	78212953	-	Syncc9605_1423	-	hypothetical protein
1399	 62.54	0	1337945..1338937	+	330	78212954	-	Syncc9605_1424	-	ATPase
1400	 64.36	0	1338894..1339976	-	360	78212955	-	Syncc9605_1425	-	hypothetical protein
1401	 64.29	0	1340031..1340324	+	97	78212956	-	Syncc9605_1426	-	hypothetical protein
1402	 57.29	0	1340321..1340608	+	95	78212957	-	Syncc9605_1427	-	hypothetical protein
1403	 62.55	0	1340668..1340934	+	88	78212958	-	Syncc9605_1428	-	photosystem I reaction center subunit X
1404	 64.73	0	1340986..1342173	-	395	78212959	-	Syncc9605_1429	-	hypothetical protein
1405	 62.22	0	1342187..1344118	-	643	78212960	-	Syncc9605_1430	-	1-deoxy-D-xylulose-5-phosphate synthase
1406	 63.33	0	1344199..1345728	+	509	78212961	-	Syncc9605_1431	-	threonine dehydratase
1407	 60.64	0	1345768..1346265	+	165	78212962	-	Syncc9605_1432	-	condensin subunit ScpB
1408	 60.27	0	1346290..1346586	+	98	78212963	-	Syncc9605_1433	-	hypothetical protein
1409	 59.28	0	1346601..1347074	-	157	78212964	-	Syncc9605_1434	-	hypothetical protein
1410	 59.09	0	1347082..1347411	-	109	78212965	-	Syncc9605_1435	-	hypothetical protein
1411	 61.35	0	1347435..1348919	+	494	78212966	-	Syncc9605_1436	-	pyruvate kinase
1412	 61.22	0	1348933..1350162	+	409	78212967	-	Syncc9605_1437	-	ABC transporter
1413	 60.42	0	1350221..1352140	+	639	78212968	-	Syncc9605_1438	-	FtsH peptidase
1414	 47.44	-1	1352189..1352344	-	51	78212969	-	Syncc9605_1439	-	hypothetical protein
1415	 57.38	0	1352341..1352997	-	218	78212970	-	Syncc9605_1440	-	ATP-dependent Clp protease proteolytic subunit
1416	 58.18	0	1353016..1353663	+	215	78212971	-	Syncc9605_1441	-	Thf1-like protein
1417	 60.95	0	1353645..1354886	-	413	78212972	-	Syncc9605_1442	-	hypothetical protein
1418	 53.92	0	1355112..1355213	-	33	78212973	-	Syncc9605_1443	-	cytochrome b6-f complex subunit PetN
1419	 60.61	0	1355286..1355582	+	98	78212974	clpS	Syncc9605_1444	-	ATP-dependent Clp protease adaptor
1420	 64.91	0	1355584..1355811	-	75	78212975	-	Syncc9605_1445	-	hypothetical protein
1421	 61.96	0	1355886..1356161	+	91	78212976	-	Syncc9605_1446	-	hypothetical protein
1422	 48.26	-1	1357341..1357742	-	133	78212977	-	Syncc9605_1447	-	hypothetical protein
1423	 63.39	0	1358436..1359596	-	386	78212978	-	Syncc9605_1448	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1424	 60.94	0	1359649..1360521	-	290	78212979	-	Syncc9605_1449	-	lactose transport system permease protein
1425	 62.90	0	1360583..1361698	+	371	78212980	-	Syncc9605_1450	-	3-dehydroquinate synthase
1426	 63.67	0	1361652..1362884	-	410	78212981	-	Syncc9605_1451	-	hypothetical protein
1427	 62.39	0	1362922..1363692	+	256	78212982	-	Syncc9605_1452	-	hypothetical protein
1428	 61.67	0	1363721..1364440	-	239	78212983	-	Syncc9605_1453	-	muramidase
1429	 63.44	0	1364648..1365733	-	361	78212984	-	Syncc9605_1454	-	hypothetical protein
1430	 64.92	0	1365727..1366584	-	285	78212985	-	Syncc9605_1455	-	putative transcripton factor
1431	 59.81	0	1366629..1367561	+	310	78212986	-	Syncc9605_1456	-	quinolinate synthetase
1432	 54.79	0	1367558..1367860	+	100	78212987	-	Syncc9605_1457	-	hypothetical protein
1433	 56.76	0	1367905..1368318	+	137	78212988	-	Syncc9605_1458	-	hypothetical protein
1434	 55.98	0	1368319..1368552	-	77	78212989	-	Syncc9605_1459	-	hypothetical protein
1435	 63.73	0	1368620..1369606	+	328	78212990	-	Syncc9605_1460	-	exonuclease involved in mRNA processing
1436	 58.62	0	1369603..1369863	-	86	78212991	-	Syncc9605_1461	-	hypothetical protein
1437	 60.99	0	1369982..1371637	+	551	161353760	-	Syncc9605_1462	-	ATP-dependent DNA ligase
1438	 61.30	0	1371637..1374132	+	831	78212993	-	Syncc9605_1463	-	DEAD/DEAH box helicase-like
1439	 53.75	0	1375327..1375566	+	79	78212994	-	Syncc9605_1466	-	hypothetical protein
1440	 56.74	0	1375583..1375864	+	93	78212995	-	Syncc9605_1467	-	hypothetical protein
1441	 60.90	0	1375889..1376287	+	132	78212996	-	Syncc9605_1468	-	hypothetical protein
1442	 58.61	0	1376284..1376829	+	181	78212997	-	Syncc9605_1469	-	hypothetical protein
1443	 59.16	0	1377078..1377410	+	110	78212998	-	Syncc9605_1470	-	hypothetical protein
1444	 50.98	-1	1377428..1377682	+	84	78212999	-	Syncc9605_1471	-	hypothetical protein
1445	 56.85	0	1377984..1378370	-	128	78213000	-	Syncc9605_1472	-	hypothetical protein
1446	 62.04	0	1378591..1378806	-	71	78213001	-	Syncc9605_1473	-	heat shock protein DnaJ-like
1447	 60.12	0	1379920..1380576	-	218	78213002	-	Syncc9605_1476	-	hypothetical protein
1448	 61.71	0	1380580..1380801	-	73	78213003	-	Syncc9605_1477	-	high light inducible protein
1449	 64.01	0	1380798..1381211	-	137	78213004	-	Syncc9605_1478	-	hypothetical protein
1450	 58.06	0	1381358..1381543	+	61	78213005	-	Syncc9605_1479	-	hypothetical protein
1451	 68.23	+1	1381527..1381718	-	63	78213006	-	Syncc9605_1480	-	hypothetical protein
1452	 65.26	0	1381757..1382254	+	165	78213007	-	Syncc9605_1481	-	hypothetical protein
1453	 63.43	0	1382251..1382682	+	143	78213008	-	Syncc9605_1482	-	NUDIX family protein
1454	 61.22	0	1382672..1383460	+	262	78213009	-	Syncc9605_1483	-	ATPase
1455	 59.20	0	1383516..1383716	+	66	78213010	-	Syncc9605_1484	-	hypothetical protein
1456	 61.09	0	1383918..1384742	-	274	78213011	-	Syncc9605_1485	-	ABC transporter
1457	 64.84	0	1384775..1386139	+	454	78213012	-	Syncc9605_1486	-	phospholipid/glycerol acyltransferase
1458	 61.51	0	1386140..1386895	-	251	78213013	-	Syncc9605_1487	-	ATPase
1459	 61.24	0	1386895..1387908	-	337	78213014	-	Syncc9605_1488	-	ABC transporter substrate-binding protein
1460	 64.22	0	1387961..1388614	+	217	78213015	-	Syncc9605_1489	-	endonuclease III
1461	 57.19	0	1388615..1388899	-	94	78213016	-	Syncc9605_1490	-	ferredoxin (2Fe-2S)
1462	 60.48	0	1389295..1389504	+	69	78213017	-	Syncc9605_1491	-	hypothetical protein
1463	 54.17	0	1389729..1389992	+	87	78213018	-	Syncc9605_1492	-	hypothetical protein
1464	 60.91	0	1390404..1390994	-	196	78213019	-	Syncc9605_1493	-	uridine kinase
1465	 63.17	0	1391090..1391404	+	104	78213020	-	Syncc9605_1494	-	hypothetical protein
1466	 60.39	0	1391483..1392853	+	456	78213021	-	Syncc9605_1495	-	putative hydrolase transmembrane protein
1467	 59.63	0	1392997..1393266	+	89	78213022	-	Syncc9605_1496	-	hypothetical protein
1468	 58.33	0	1393330..1393713	-	127	78213023	-	Syncc9605_1497	-	hypothetical protein
1469	 55.15	0	1393780..1394109	+	109	78213024	-	Syncc9605_1498	-	hypothetical protein
1470	 59.37	0	1394122..1394436	-	104	78213025	-	Syncc9605_1499	-	hypothetical protein
1471	 62.53	0	1394490..1394876	+	128	78213026	-	Syncc9605_1500	-	hypothetical protein
1472	 61.18	0	1395010..1395246	+	78	78213027	-	Syncc9605_1501	-	hypothetical protein
1473	 54.42	0	1395231..1395524	-	97	78213028	-	Syncc9605_1502	-	hypothetical protein
1474	 59.35	0	1395839..1396699	-	286	78213029	-	Syncc9605_1503	-	hypothetical protein
1475	 62.96	0	1396765..1397169	+	134	78213030	-	Syncc9605_1504	-	hypothetical protein
1476	 60.17	0	1397187..1397540	-	117	78213031	-	Syncc9605_1505	-	hypothetical protein
1477	 56.96	0	1398031..1398267	-	78	78213032	-	Syncc9605_1506	-	hypothetical protein
1478	 64.06	0	1398353..1398889	+	178	78213033	-	Syncc9605_1507	-	superoxide dismutase precursor (Cu-Zn)
1479	 62.22	0	1399101..1399280	-	59	78213034	-	Syncc9605_1508	-	hypothetical protein
1480	 54.31	0	1399369..1399635	+	88	78213035	-	Syncc9605_1509	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.