IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1325	 58.33	0	1263163..1263954	-	263	78212880	-	Syncc9605_1350	-	hypothetical protein
1326	 60.77	0	1264082..1264810	+	242	78212881	-	Syncc9605_1351	-	CsgA C-factor signaling protein
1327	 59.09	0	1264792..1265187	-	131	78212882	-	Syncc9605_1352	-	hypothetical protein
1328	 57.58	0	1265299..1265529	+	76	78212883	-	Syncc9605_1353	-	hypothetical protein
1329	 56.04	0	1265560..1265832	-	90	78212884	-	Syncc9605_1354	-	hypothetical protein
1330	 61.12	0	1265880..1269506	-	1208	78212885	-	Syncc9605_1355	-	methionine synthase (B12-dependent)
1331	 60.33	0	1269570..1270484	-	304	78212886	-	Syncc9605_1356	-	branched-chain amino acid aminotransferase
1332	 64.87	0	1270550..1274278	+	1242	78212887	-	Syncc9605_1357	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
1333	 59.10	0	1274268..1274822	-	184	78212888	-	Syncc9605_1358	-	hypothetical protein
1334	 61.73	0	1274850..1275497	-	215	78212889	-	Syncc9605_1359	-	phosphoesterase PHP-like
1335	 60.91	0	1275511..1276083	-	190	78212890	-	Syncc9605_1360	-	hypothetical protein
1336	 61.32	0	1276119..1277615	-	498	78212891	-	Syncc9605_1361	-	photolyase family protein
1337	 65.28	0	1277618..1277905	-	95	78212892	-	Syncc9605_1362	-	hypothetical protein
1338	 62.59	0	1277902..1279887	-	661	78212893	uvrC	Syncc9605_1363	-	excinuclease ABC subunit C
1339	 61.49	0	1279897..1280379	-	160	78212894	-	Syncc9605_1364	-	hypothetical protein
1340	 59.55	0	1280449..1280940	+	163	78212895	-	Syncc9605_1365	-	phosphopantetheine adenylyltransferase
1341	 62.45	0	1280942..1281961	+	339	78212896	-	Syncc9605_1366	-	hypothetical protein
1342	 64.30	0	1281906..1283213	-	435	78212897	-	Syncc9605_1367	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
1343	 62.50	0	1283210..1283713	-	167	78212898	-	Syncc9605_1368	-	hypothetical protein
1344	 62.76	0	1283779..1284495	-	238	78212899	-	Syncc9605_1369	-	hypothetical protein
1345	 66.16	+1	1284508..1285680	-	390	78212900	-	Syncc9605_1370	-	class-V aminotransferase family cysteine desulfurase
1346	 63.96	0	1285667..1286773	-	368	78212901	-	Syncc9605_1371	-	diaminopimelate epimerase
1347	 52.27	-1	1287134..1287397	+	87	78212902	-	Syncc9605_1372	-	hypothetical protein
1348	 45.31	-2	1288403..1288828	-	141	78212903	-	Syncc9605_1373	-	hypothetical protein
1349	 56.10	0	1289770..1290195	-	141	78212904	-	Syncc9605_1374	-	hypothetical protein
1350	 55.28	0	1291336..1291704	-	122	78212905	-	Syncc9605_1375	-	hypothetical protein
1351	 43.33	-2	1292186..1292695	+	169	78212906	-	Syncc9605_1376	-	hypothetical protein
1352	 41.74	-2	1292951..1293307	-	118	78212907	-	Syncc9605_1377	-	hypothetical protein
1353	 54.28	0	1293375..1294577	-	400	78212908	-	Syncc9605_1378	-	site-specific recombinase XerD-like
1354	 62.16	0	1294687..1294908	+	73	78212909	-	Syncc9605_1379	-	hypothetical protein
1355	 63.24	0	1294937..1297564	+	875	78212910	leuS	Syncc9605_1380	-	leucyl-tRNA synthetase
1356	 61.78	0	1297577..1299235	-	552	78212911	pgi	Syncc9605_1381	-	glucose-6-phosphate isomerase
1357	 59.66	0	1299291..1300061	+	256	78212912	-	Syncc9605_1382	-	hypothetical protein
1358	 59.23	0	1300183..1300518	+	111	78212913	-	Syncc9605_1383	-	hypothetical protein
1359	 55.83	0	1300536..1300775	-	79	78212914	-	Syncc9605_1384	-	hypothetical protein
1360	 61.82	0	1300812..1301699	-	295	78212915	-	Syncc9605_1385	-	N-acetylmuramoyl-L-alanine amidase
1361	 63.00	0	1301681..1303318	-	545	78212916	-	Syncc9605_1386	-	PDZ/DHR/GLGF
1362	 61.82	0	1303380..1303730	-	116	78212917	-	Syncc9605_1387	-	hypothetical protein
1363	 63.99	0	1303803..1304363	+	186	78212918	-	Syncc9605_1388	-	phosphoribosylglycinamide formyltransferase
1364	 64.99	0	1304354..1305427	-	357	78212919	argC	Syncc9605_1389	-	N-acetyl-gamma-glutamyl-phosphate reductase
1365	 64.45	0	1305625..1307160	+	511	78212920	-	Syncc9605_1390	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1366	 62.39	0	1307161..1307604	-	147	78212921	-	Syncc9605_1391	-	peptidylprolyl isomerase
1367	 63.92	0	1307645..1308553	+	302	78212922	-	Syncc9605_1392	-	methylthioadenosine phosphorylase
1368	 67.82	+1	1308535..1309485	-	316	78212923	murQ	Syncc9605_1393	-	N-acetylmuramic acid-6-phosphate etherase
1369	 62.66	0	1309489..1309962	-	157	78212924	-	Syncc9605_1394	-	hypothetical protein
1370	 61.95	0	1310006..1310938	-	310	78212925	-	Syncc9605_1395	-	heat shock protein DnaJ-like
1371	 62.45	0	1310922..1312913	-	663	78212926	-	Syncc9605_1396	-	molecular chaperone DnaK, heat shock protein HSP70
1372	 55.80	0	1313038..1313985	+	315	78212927	-	Syncc9605_1397	-	phosphate ABC transporter permease
1373	 59.48	0	1313987..1314904	+	305	78212928	-	Syncc9605_1398	-	phosphate ABC transporter permease
1374	 55.72	0	1314925..1315746	+	273	78212929	-	Syncc9605_1399	-	phosphate ABC transporter permease
1375	 62.60	0	1315974..1316342	+	122	78212930	-	Syncc9605_1400	-	ferredoxin
1376	 64.30	0	1316345..1317232	+	295	78212931	-	Syncc9605_1401	-	inositol-1(or 4)-monophosphatase
1377	 62.09	0	1317255..1318433	+	392	78212932	hisZ	Syncc9605_1402	-	ATP phosphoribosyltransferase regulatory subunit
1378	 55.11	0	1318459..1318683	+	74	78212933	-	Syncc9605_1403	-	ferredoxin
1379	 60.42	0	1318772..1320676	+	634	78212934	-	Syncc9605_1404	-	heat shock protein 90
1380	 60.34	0	1320756..1320992	+	78	78212935	rpmB	Syncc9605_1405	-	50S ribosomal protein L28
1381	 61.14	0	1321005..1321565	+	186	78212936	-	Syncc9605_1406	-	twin-arginine translocation pathway signal
1382	 53.92	0	1321618..1323108	+	496	78212937	-	Syncc9605_1407	-	glucosylglycerol-phosphate synthase
1383	 62.24	0	1323105..1324370	+	421	78212938	-	Syncc9605_1408	-	ABC transporter, likely sugar solute binding protein
1384	 61.94	0	1324367..1325233	+	288	78212939	-	Syncc9605_1409	-	trehalose/maltose ABC transporter membrane protein
1385	 59.93	0	1325230..1326105	+	291	78212940	-	Syncc9605_1410	-	ABC transporter, likely for trehalose/maltose, membrane component
1386	 55.11	0	1326213..1327796	+	527	78212941	-	Syncc9605_1411	-	hypothetical protein
1387	 53.25	0	1327841..1328563	-	240	78212942	-	Syncc9605_1412	-	hypothetical protein
1388	 53.93	0	1328784..1329152	+	122	78212943	-	Syncc9605_1413	-	hypothetical protein
1389	 44.83	-2	1329295..1329555	-	86	78212944	-	Syncc9605_1414	-	hypothetical protein
1390	 53.54	0	1329796..1330374	+	192	78212945	-	Syncc9605_1415	-	hypothetical protein
1391	 37.55	-2	1330875..1331135	-	86	78212946	-	Syncc9605_1416	-	hypothetical protein
1392	 51.40	-1	1331257..1332756	-	499	78212947	-	Syncc9605_1417	-	hypothetical protein
1393	 46.48	-2	1332946..1333470	+	174	78212948	-	Syncc9605_1418	-	hypothetical protein
1394	 48.01	-1	1333476..1334177	+	233	78212949	-	Syncc9605_1419	-	hypothetical protein
1395	 42.32	-2	1334184..1334684	-	166	78212950	-	Syncc9605_1420	-	hypothetical protein
1396	 39.06	-2	1335727..1335918	-	63	78212951	-	Syncc9605_1421	-	hypothetical protein
1397	 42.59	-2	1335990..1336259	-	89	78212952	-	Syncc9605_1422	-	hypothetical protein
1398	 54.37	0	1337332..1337754	-	140	78212953	-	Syncc9605_1423	-	hypothetical protein
1399	 62.54	0	1337945..1338937	+	330	78212954	-	Syncc9605_1424	-	ATPase
1400	 64.36	0	1338894..1339976	-	360	78212955	-	Syncc9605_1425	-	hypothetical protein
1401	 64.29	0	1340031..1340324	+	97	78212956	-	Syncc9605_1426	-	hypothetical protein
1402	 57.29	0	1340321..1340608	+	95	78212957	-	Syncc9605_1427	-	hypothetical protein
1403	 62.55	0	1340668..1340934	+	88	78212958	-	Syncc9605_1428	-	photosystem I reaction center subunit X
1404	 64.73	0	1340986..1342173	-	395	78212959	-	Syncc9605_1429	-	hypothetical protein
1405	 62.22	0	1342187..1344118	-	643	78212960	-	Syncc9605_1430	-	1-deoxy-D-xylulose-5-phosphate synthase
1406	 63.33	0	1344199..1345728	+	509	78212961	-	Syncc9605_1431	-	threonine dehydratase
1407	 60.64	0	1345768..1346265	+	165	78212962	-	Syncc9605_1432	-	condensin subunit ScpB
1408	 60.27	0	1346290..1346586	+	98	78212963	-	Syncc9605_1433	-	hypothetical protein
1409	 59.28	0	1346601..1347074	-	157	78212964	-	Syncc9605_1434	-	hypothetical protein
1410	 59.09	0	1347082..1347411	-	109	78212965	-	Syncc9605_1435	-	hypothetical protein
1411	 61.35	0	1347435..1348919	+	494	78212966	-	Syncc9605_1436	-	pyruvate kinase
1412	 61.22	0	1348933..1350162	+	409	78212967	-	Syncc9605_1437	-	ABC transporter
1413	 60.42	0	1350221..1352140	+	639	78212968	-	Syncc9605_1438	-	FtsH peptidase
1414	 47.44	-1	1352189..1352344	-	51	78212969	-	Syncc9605_1439	-	hypothetical protein
1415	 57.38	0	1352341..1352997	-	218	78212970	-	Syncc9605_1440	-	ATP-dependent Clp protease proteolytic subunit
1416	 58.18	0	1353016..1353663	+	215	78212971	-	Syncc9605_1441	-	Thf1-like protein
1417	 60.95	0	1353645..1354886	-	413	78212972	-	Syncc9605_1442	-	hypothetical protein
1418	 53.92	0	1355112..1355213	-	33	78212973	-	Syncc9605_1443	-	cytochrome b6-f complex subunit PetN
1419	 60.61	0	1355286..1355582	+	98	78212974	clpS	Syncc9605_1444	-	ATP-dependent Clp protease adaptor
1420	 64.91	0	1355584..1355811	-	75	78212975	-	Syncc9605_1445	-	hypothetical protein
1421	 61.96	0	1355886..1356161	+	91	78212976	-	Syncc9605_1446	-	hypothetical protein
1422	 48.26	-1	1357341..1357742	-	133	78212977	-	Syncc9605_1447	-	hypothetical protein
1423	 63.39	0	1358436..1359596	-	386	78212978	-	Syncc9605_1448	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1424	 60.94	0	1359649..1360521	-	290	78212979	-	Syncc9605_1449	-	lactose transport system permease protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.