IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1285	 60.05	0	1225598..1226035	-	145	78212841	-	Syncc9605_1311	-	hypothetical protein
1286	 60.70	0	1226081..1226566	-	161	78212842	-	Syncc9605_1312	-	hypothetical protein
1287	 62.23	0	1226563..1227171	-	202	78212843	-	Syncc9605_1313	-	aromatic acid decarboxylase
1288	 59.73	0	1227175..1229496	-	773	78212844	-	Syncc9605_1314	-	RNA binding S1
1289	 57.23	0	1229597..1229914	-	105	78212845	-	Syncc9605_1315	-	hypothetical protein
1290	 57.36	0	1229917..1230249	-	110	78212846	-	Syncc9605_1316	-	hypothetical protein
1291	 57.33	0	1230239..1230613	-	124	78212847	-	Syncc9605_1317	-	hypothetical protein
1292	 62.52	0	1230840..1232696	-	618	78212848	-	Syncc9605_1318	-	exonuclease RecJ
1293	 60.64	0	1232771..1233550	+	259	78212849	-	Syncc9605_1319	-	HAD family hydrolase
1294	 54.49	0	1233547..1233858	+	103	78212850	-	Syncc9605_1320	-	hypothetical protein
1295	 59.10	0	1233848..1234825	+	325	78212851	-	Syncc9605_1321	-	hypothetical protein
1296	 61.58	0	1234789..1234965	-	58	109150036	rpmF	Syncc9605_1321a	-	50S ribosomal protein L32
1297	 59.82	0	1235053..1236849	+	598	78212852	-	Syncc9605_1322	-	ATP-dependent metalloprotease FtsH
1298	 54.17	0	1236846..1239590	+	914	78212853	-	Syncc9605_1323	-	hypothetical protein
1299	 57.38	0	1239626..1240228	-	200	78212854	-	Syncc9605_1324	-	thioredoxin peroxidase
1300	 60.80	0	1240350..1240673	+	107	78212855	-	Syncc9605_1325	-	hypothetical protein
1301	 57.24	0	1240856..1241905	-	349	78212856	-	Syncc9605_1326	-	peptidoglycan-binding LysM
1302	 61.59	0	1241978..1242469	-	163	78212857	-	Syncc9605_1327	-	SpoU family tRNA/rRNA methyltransferase
1303	 60.85	0	1242466..1243050	-	194	78212858	-	Syncc9605_1328	-	adenosylcobinamide kinase
1304	 53.00	-1	1243037..1244185	-	382	78212859	-	Syncc9605_1329	-	proton extrusion protein PcxA
1305	 58.63	0	1244199..1244870	-	223	78212860	-	Syncc9605_1330	-	hypothetical protein
1306	 59.31	0	1244904..1245311	-	135	78212861	-	Syncc9605_1331	-	hypothetical protein
1307	 61.29	0	1245374..1246024	+	216	78212862	-	Syncc9605_1332	-	hypothetical protein
1308	 59.13	0	1245969..1247135	-	388	78212863	-	Syncc9605_1333	-	hypothetical protein
1309	 60.26	0	1247122..1248666	-	514	78212864	metG	Syncc9605_1334	-	methionyl-tRNA synthetase
1310	 62.64	0	1248753..1250540	+	595	78212865	-	Syncc9605_1335	-	hypothetical protein
1311	 60.51	0	1250528..1252558	-	676	78212866	-	Syncc9605_1336	-	ribonuclease II
1312	 56.31	0	1252569..1252790	-	73	78212867	rpsR	Syncc9605_1337	-	30S ribosomal protein S18
1313	 56.41	0	1252829..1253023	-	64	161353761	rpmG	Syncc9605_1338	-	50S ribosomal protein L33
1314	 62.29	0	1253150..1255573	+	807	78212869	-	Syncc9605_1339	-	phenylalanyl-tRNA synthetase beta subunit
1315	 60.66	0	1255563..1256960	-	465	78212870	-	Syncc9605_1340	-	23S rRNA (uracil-5-)-methyltransferase RumA
1316	 57.78	0	1257061..1257555	+	164	78212871	-	Syncc9605_1341	-	allophycocyanin alpha-B chain
1317	 50.35	-1	1257737..1258024	-	95	78212872	-	Syncc9605_1342	-	hypothetical protein
1318	 54.33	0	1258169..1258630	+	153	78212873	-	Syncc9605_1343	-	hypothetical protein
1319	 59.92	0	1258693..1259640	-	315	78212874	-	Syncc9605_1344	-	DnaJ domain-containing protein
1320	 57.65	0	1259719..1261260	-	513	78212875	-	Syncc9605_1345	-	hypothetical protein
1321	 57.55	0	1261319..1261702	-	127	78212876	-	Syncc9605_1346	-	hypothetical protein
1322	 56.70	0	1261674..1261934	-	86	78212877	-	Syncc9605_1347	-	hypothetical protein
1323	 55.43	0	1262004..1262261	-	85	78212878	-	Syncc9605_1348	-	type 3 alternative RNA polymerase sigma factor
1324	 60.17	0	1262292..1263137	-	281	78212879	-	Syncc9605_1349	-	ATP adenylyltransferase
1325	 58.33	0	1263163..1263954	-	263	78212880	-	Syncc9605_1350	-	hypothetical protein
1326	 60.77	0	1264082..1264810	+	242	78212881	-	Syncc9605_1351	-	CsgA C-factor signaling protein
1327	 59.09	0	1264792..1265187	-	131	78212882	-	Syncc9605_1352	-	hypothetical protein
1328	 57.58	0	1265299..1265529	+	76	78212883	-	Syncc9605_1353	-	hypothetical protein
1329	 56.04	0	1265560..1265832	-	90	78212884	-	Syncc9605_1354	-	hypothetical protein
1330	 61.12	0	1265880..1269506	-	1208	78212885	-	Syncc9605_1355	-	methionine synthase (B12-dependent)
1331	 60.33	0	1269570..1270484	-	304	78212886	-	Syncc9605_1356	-	branched-chain amino acid aminotransferase
1332	 64.87	0	1270550..1274278	+	1242	78212887	-	Syncc9605_1357	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
1333	 59.10	0	1274268..1274822	-	184	78212888	-	Syncc9605_1358	-	hypothetical protein
1334	 61.73	0	1274850..1275497	-	215	78212889	-	Syncc9605_1359	-	phosphoesterase PHP-like
1335	 60.91	0	1275511..1276083	-	190	78212890	-	Syncc9605_1360	-	hypothetical protein
1336	 61.32	0	1276119..1277615	-	498	78212891	-	Syncc9605_1361	-	photolyase family protein
1337	 65.28	0	1277618..1277905	-	95	78212892	-	Syncc9605_1362	-	hypothetical protein
1338	 62.59	0	1277902..1279887	-	661	78212893	uvrC	Syncc9605_1363	-	excinuclease ABC subunit C
1339	 61.49	0	1279897..1280379	-	160	78212894	-	Syncc9605_1364	-	hypothetical protein
1340	 59.55	0	1280449..1280940	+	163	78212895	-	Syncc9605_1365	-	phosphopantetheine adenylyltransferase
1341	 62.45	0	1280942..1281961	+	339	78212896	-	Syncc9605_1366	-	hypothetical protein
1342	 64.30	0	1281906..1283213	-	435	78212897	-	Syncc9605_1367	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
1343	 62.50	0	1283210..1283713	-	167	78212898	-	Syncc9605_1368	-	hypothetical protein
1344	 62.76	0	1283779..1284495	-	238	78212899	-	Syncc9605_1369	-	hypothetical protein
1345	 66.16	+1	1284508..1285680	-	390	78212900	-	Syncc9605_1370	-	class-V aminotransferase family cysteine desulfurase
1346	 63.96	0	1285667..1286773	-	368	78212901	-	Syncc9605_1371	-	diaminopimelate epimerase
1347	 52.27	-1	1287134..1287397	+	87	78212902	-	Syncc9605_1372	-	hypothetical protein
1348	 45.31	-2	1288403..1288828	-	141	78212903	-	Syncc9605_1373	-	hypothetical protein
1349	 56.10	0	1289770..1290195	-	141	78212904	-	Syncc9605_1374	-	hypothetical protein
1350	 55.28	0	1291336..1291704	-	122	78212905	-	Syncc9605_1375	-	hypothetical protein
1351	 43.33	-2	1292186..1292695	+	169	78212906	-	Syncc9605_1376	-	hypothetical protein
1352	 41.74	-2	1292951..1293307	-	118	78212907	-	Syncc9605_1377	-	hypothetical protein
1353	 54.28	0	1293375..1294577	-	400	78212908	-	Syncc9605_1378	-	site-specific recombinase XerD-like
1354	 62.16	0	1294687..1294908	+	73	78212909	-	Syncc9605_1379	-	hypothetical protein
1355	 63.24	0	1294937..1297564	+	875	78212910	leuS	Syncc9605_1380	-	leucyl-tRNA synthetase
1356	 61.78	0	1297577..1299235	-	552	78212911	pgi	Syncc9605_1381	-	glucose-6-phosphate isomerase
1357	 59.66	0	1299291..1300061	+	256	78212912	-	Syncc9605_1382	-	hypothetical protein
1358	 59.23	0	1300183..1300518	+	111	78212913	-	Syncc9605_1383	-	hypothetical protein
1359	 55.83	0	1300536..1300775	-	79	78212914	-	Syncc9605_1384	-	hypothetical protein
1360	 61.82	0	1300812..1301699	-	295	78212915	-	Syncc9605_1385	-	N-acetylmuramoyl-L-alanine amidase
1361	 63.00	0	1301681..1303318	-	545	78212916	-	Syncc9605_1386	-	PDZ/DHR/GLGF
1362	 61.82	0	1303380..1303730	-	116	78212917	-	Syncc9605_1387	-	hypothetical protein
1363	 63.99	0	1303803..1304363	+	186	78212918	-	Syncc9605_1388	-	phosphoribosylglycinamide formyltransferase
1364	 64.99	0	1304354..1305427	-	357	78212919	argC	Syncc9605_1389	-	N-acetyl-gamma-glutamyl-phosphate reductase
1365	 64.45	0	1305625..1307160	+	511	78212920	-	Syncc9605_1390	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1366	 62.39	0	1307161..1307604	-	147	78212921	-	Syncc9605_1391	-	peptidylprolyl isomerase
1367	 63.92	0	1307645..1308553	+	302	78212922	-	Syncc9605_1392	-	methylthioadenosine phosphorylase
1368	 67.82	+1	1308535..1309485	-	316	78212923	murQ	Syncc9605_1393	-	N-acetylmuramic acid-6-phosphate etherase
1369	 62.66	0	1309489..1309962	-	157	78212924	-	Syncc9605_1394	-	hypothetical protein
1370	 61.95	0	1310006..1310938	-	310	78212925	-	Syncc9605_1395	-	heat shock protein DnaJ-like
1371	 62.45	0	1310922..1312913	-	663	78212926	-	Syncc9605_1396	-	molecular chaperone DnaK, heat shock protein HSP70
1372	 55.80	0	1313038..1313985	+	315	78212927	-	Syncc9605_1397	-	phosphate ABC transporter permease
1373	 59.48	0	1313987..1314904	+	305	78212928	-	Syncc9605_1398	-	phosphate ABC transporter permease
1374	 55.72	0	1314925..1315746	+	273	78212929	-	Syncc9605_1399	-	phosphate ABC transporter permease
1375	 62.60	0	1315974..1316342	+	122	78212930	-	Syncc9605_1400	-	ferredoxin
1376	 64.30	0	1316345..1317232	+	295	78212931	-	Syncc9605_1401	-	inositol-1(or 4)-monophosphatase
1377	 62.09	0	1317255..1318433	+	392	78212932	hisZ	Syncc9605_1402	-	ATP phosphoribosyltransferase regulatory subunit
1378	 55.11	0	1318459..1318683	+	74	78212933	-	Syncc9605_1403	-	ferredoxin
1379	 60.42	0	1318772..1320676	+	634	78212934	-	Syncc9605_1404	-	heat shock protein 90
1380	 60.34	0	1320756..1320992	+	78	78212935	rpmB	Syncc9605_1405	-	50S ribosomal protein L28
1381	 61.14	0	1321005..1321565	+	186	78212936	-	Syncc9605_1406	-	twin-arginine translocation pathway signal
1382	 53.92	0	1321618..1323108	+	496	78212937	-	Syncc9605_1407	-	glucosylglycerol-phosphate synthase
1383	 62.24	0	1323105..1324370	+	421	78212938	-	Syncc9605_1408	-	ABC transporter, likely sugar solute binding protein
1384	 61.94	0	1324367..1325233	+	288	78212939	-	Syncc9605_1409	-	trehalose/maltose ABC transporter membrane protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.