IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1239	 62.10	0	1183559..1184674	+	371	78212795	-	Syncc9605_1264	-	putative cobalamin synthesis protein
1240	 62.98	0	1184611..1185477	-	288	78212796	-	Syncc9605_1265	-	hypothetical protein
1241	 57.45	0	1185564..1186442	+	292	78212797	-	Syncc9605_1266	-	hypothetical protein
1242	 41.55	-2	1186421..1186639	+	72	78212798	-	Syncc9605_1267	-	hypothetical protein
1243	 58.36	0	1186650..1187636	-	328	78212799	-	Syncc9605_1268	-	chlorophyll synthase / NADPH-protochlorophyllide oxidoreductase
1244	 57.50	0	1187608..1188414	-	268	78212800	-	Syncc9605_1269	-	inner membrane protein
1245	 59.59	0	1188483..1189061	+	192	78212801	-	Syncc9605_1270	-	hypothetical protein
1246	 59.91	0	1189061..1189756	+	231	78212802	-	Syncc9605_1271	-	putative short-chain dehydrogenase family protein
1247	 55.66	0	1189787..1190113	+	108	78212803	-	Syncc9605_1272	-	hypothetical protein
1248	 59.19	0	1190110..1190577	+	155	78212804	-	Syncc9605_1273	-	hypothetical protein
1249	 56.12	0	1190561..1190977	-	138	78212805	-	Syncc9605_1274	-	hypothetical protein
1250	 47.53	-1	1191494..1191979	+	161	78212806	-	Syncc9605_1276	-	hypothetical protein
1251	 61.49	0	1192554..1194908	-	784	78212807	-	Syncc9605_1277	-	ribonucleotide reductase (class II)
1252	 61.23	0	1195003..1195683	+	226	78212808	-	Syncc9605_1278	-	hypothetical protein
1253	 59.08	0	1195690..1197336	+	548	78212809	prfC	Syncc9605_1279	-	peptide chain release factor 3
1254	 59.01	0	1197406..1197627	+	73	78212810	-	Syncc9605_1280	-	hypothetical protein
1255	 62.64	0	1197669..1198364	+	231	78212811	-	Syncc9605_1281	-	hypothetical protein
1256	 60.89	0	1198368..1199285	-	305	78212812	-	Syncc9605_1282	-	chaperonin HSP33
1257	 63.38	0	1199300..1199938	-	212	78212813	-	Syncc9605_1283	-	ATPase
1258	 56.22	0	1199980..1200429	+	149	78212814	-	Syncc9605_1284	-	hypothetical protein
1259	 61.61	0	1200422..1201153	+	243	78212815	-	Syncc9605_1285	-	hypothetical protein
1260	 61.34	0	1201143..1201574	-	143	78212816	-	Syncc9605_1286	-	hypothetical protein
1261	 62.78	0	1201634..1202380	+	248	78212817	-	Syncc9605_1287	-	hypothetical protein
1262	 59.60	0	1202581..1203132	-	183	78212818	-	Syncc9605_1288	-	DNA-directed RNA polymerase specialized sigma subunit-like
1263	 55.76	0	1203216..1203380	+	54	78212819	-	Syncc9605_1289	-	hypothetical protein
1264	 62.50	0	1203384..1203551	-	55	78212820	-	Syncc9605_1290	-	hypothetical protein
1265	 61.72	0	1203606..1204292	-	228	78212821	-	Syncc9605_1291	-	hypothetical protein
1266	 63.60	0	1204289..1205821	-	510	78212822	-	Syncc9605_1292	-	putative phosphonate ABC transporter
1267	 62.84	0	1205800..1206504	-	234	78212823	-	Syncc9605_1293	-	ATPase
1268	 61.26	0	1206501..1207424	-	307	78212824	-	Syncc9605_1294	-	phosphonate-binding periplasmic protein
1269	 62.93	0	1207451..1208629	-	392	78212825	-	Syncc9605_1295	-	L-aspartate aminotransferase
1270	 61.44	0	1208716..1209117	+	133	78212826	-	Syncc9605_1296	-	hypothetical protein
1271	 60.64	0	1209114..1209677	+	187	78212827	-	Syncc9605_1297	-	phage SPO1 DNA polymerase-related protein
1272	 60.23	0	1209698..1210894	+	398	78212828	ispG	Syncc9605_1298	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1273	 57.41	0	1210928..1212277	+	449	78212829	-	Syncc9605_1299	-	carboxyl-terminal protease
1274	 61.25	0	1212529..1216107	-	1192	78212830	-	Syncc9605_1300	-	transcription-repair coupling factor
1275	 56.41	0	1216612..1217118	-	168	78212831	-	Syncc9605_1301	-	hypothetical protein
1276	 47.44	-1	1217746..1217901	+	51	78212832	-	Syncc9605_1302	-	hypothetical protein
1277	 58.03	0	1218118..1218870	-	250	78212833	-	Syncc9605_1303	-	hypothetical protein
1278	 55.56	0	1218909..1219646	+	245	78212834	-	Syncc9605_1304	-	TerC family protein
1279	 56.34	0	1219636..1219974	+	112	78212835	-	Syncc9605_1305	-	hypothetical protein
1280	 52.84	-1	1219978..1220628	+	216	78212836	-	Syncc9605_1306	-	hypothetical protein
1281	 60.47	0	1220630..1221646	-	338	78212837	-	Syncc9605_1307	-	methionyl-tRNA formyltransferase
1282	 58.28	0	1221649..1223019	-	456	78212838	-	Syncc9605_1308	-	modulator of DNA gyrase
1283	 59.15	0	1223019..1224428	-	469	78212839	-	Syncc9605_1309	-	putative modulator of DNA gyrase; TldD
1284	 54.72	0	1224461..1225531	-	356	78212840	-	Syncc9605_1310	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1285	 60.05	0	1225598..1226035	-	145	78212841	-	Syncc9605_1311	-	hypothetical protein
1286	 60.70	0	1226081..1226566	-	161	78212842	-	Syncc9605_1312	-	hypothetical protein
1287	 62.23	0	1226563..1227171	-	202	78212843	-	Syncc9605_1313	-	aromatic acid decarboxylase
1288	 59.73	0	1227175..1229496	-	773	78212844	-	Syncc9605_1314	-	RNA binding S1
1289	 57.23	0	1229597..1229914	-	105	78212845	-	Syncc9605_1315	-	hypothetical protein
1290	 57.36	0	1229917..1230249	-	110	78212846	-	Syncc9605_1316	-	hypothetical protein
1291	 57.33	0	1230239..1230613	-	124	78212847	-	Syncc9605_1317	-	hypothetical protein
1292	 62.52	0	1230840..1232696	-	618	78212848	-	Syncc9605_1318	-	exonuclease RecJ
1293	 60.64	0	1232771..1233550	+	259	78212849	-	Syncc9605_1319	-	HAD family hydrolase
1294	 54.49	0	1233547..1233858	+	103	78212850	-	Syncc9605_1320	-	hypothetical protein
1295	 59.10	0	1233848..1234825	+	325	78212851	-	Syncc9605_1321	-	hypothetical protein
1296	 61.58	0	1234789..1234965	-	58	109150036	rpmF	Syncc9605_1321a	-	50S ribosomal protein L32
1297	 59.82	0	1235053..1236849	+	598	78212852	-	Syncc9605_1322	-	ATP-dependent metalloprotease FtsH
1298	 54.17	0	1236846..1239590	+	914	78212853	-	Syncc9605_1323	-	hypothetical protein
1299	 57.38	0	1239626..1240228	-	200	78212854	-	Syncc9605_1324	-	thioredoxin peroxidase
1300	 60.80	0	1240350..1240673	+	107	78212855	-	Syncc9605_1325	-	hypothetical protein
1301	 57.24	0	1240856..1241905	-	349	78212856	-	Syncc9605_1326	-	peptidoglycan-binding LysM
1302	 61.59	0	1241978..1242469	-	163	78212857	-	Syncc9605_1327	-	SpoU family tRNA/rRNA methyltransferase
1303	 60.85	0	1242466..1243050	-	194	78212858	-	Syncc9605_1328	-	adenosylcobinamide kinase
1304	 53.00	-1	1243037..1244185	-	382	78212859	-	Syncc9605_1329	-	proton extrusion protein PcxA
1305	 58.63	0	1244199..1244870	-	223	78212860	-	Syncc9605_1330	-	hypothetical protein
1306	 59.31	0	1244904..1245311	-	135	78212861	-	Syncc9605_1331	-	hypothetical protein
1307	 61.29	0	1245374..1246024	+	216	78212862	-	Syncc9605_1332	-	hypothetical protein
1308	 59.13	0	1245969..1247135	-	388	78212863	-	Syncc9605_1333	-	hypothetical protein
1309	 60.26	0	1247122..1248666	-	514	78212864	metG	Syncc9605_1334	-	methionyl-tRNA synthetase
1310	 62.64	0	1248753..1250540	+	595	78212865	-	Syncc9605_1335	-	hypothetical protein
1311	 60.51	0	1250528..1252558	-	676	78212866	-	Syncc9605_1336	-	ribonuclease II
1312	 56.31	0	1252569..1252790	-	73	78212867	rpsR	Syncc9605_1337	-	30S ribosomal protein S18
1313	 56.41	0	1252829..1253023	-	64	161353761	rpmG	Syncc9605_1338	-	50S ribosomal protein L33
1314	 62.29	0	1253150..1255573	+	807	78212869	-	Syncc9605_1339	-	phenylalanyl-tRNA synthetase beta subunit
1315	 60.66	0	1255563..1256960	-	465	78212870	-	Syncc9605_1340	-	23S rRNA (uracil-5-)-methyltransferase RumA
1316	 57.78	0	1257061..1257555	+	164	78212871	-	Syncc9605_1341	-	allophycocyanin alpha-B chain
1317	 50.35	-1	1257737..1258024	-	95	78212872	-	Syncc9605_1342	-	hypothetical protein
1318	 54.33	0	1258169..1258630	+	153	78212873	-	Syncc9605_1343	-	hypothetical protein
1319	 59.92	0	1258693..1259640	-	315	78212874	-	Syncc9605_1344	-	DnaJ domain-containing protein
1320	 57.65	0	1259719..1261260	-	513	78212875	-	Syncc9605_1345	-	hypothetical protein
1321	 57.55	0	1261319..1261702	-	127	78212876	-	Syncc9605_1346	-	hypothetical protein
1322	 56.70	0	1261674..1261934	-	86	78212877	-	Syncc9605_1347	-	hypothetical protein
1323	 55.43	0	1262004..1262261	-	85	78212878	-	Syncc9605_1348	-	type 3 alternative RNA polymerase sigma factor
1324	 60.17	0	1262292..1263137	-	281	78212879	-	Syncc9605_1349	-	ATP adenylyltransferase
1325	 58.33	0	1263163..1263954	-	263	78212880	-	Syncc9605_1350	-	hypothetical protein
1326	 60.77	0	1264082..1264810	+	242	78212881	-	Syncc9605_1351	-	CsgA C-factor signaling protein
1327	 59.09	0	1264792..1265187	-	131	78212882	-	Syncc9605_1352	-	hypothetical protein
1328	 57.58	0	1265299..1265529	+	76	78212883	-	Syncc9605_1353	-	hypothetical protein
1329	 56.04	0	1265560..1265832	-	90	78212884	-	Syncc9605_1354	-	hypothetical protein
1330	 61.12	0	1265880..1269506	-	1208	78212885	-	Syncc9605_1355	-	methionine synthase (B12-dependent)
1331	 60.33	0	1269570..1270484	-	304	78212886	-	Syncc9605_1356	-	branched-chain amino acid aminotransferase
1332	 64.87	0	1270550..1274278	+	1242	78212887	-	Syncc9605_1357	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
1333	 59.10	0	1274268..1274822	-	184	78212888	-	Syncc9605_1358	-	hypothetical protein
1334	 61.73	0	1274850..1275497	-	215	78212889	-	Syncc9605_1359	-	phosphoesterase PHP-like
1335	 60.91	0	1275511..1276083	-	190	78212890	-	Syncc9605_1360	-	hypothetical protein
1336	 61.32	0	1276119..1277615	-	498	78212891	-	Syncc9605_1361	-	photolyase family protein
1337	 65.28	0	1277618..1277905	-	95	78212892	-	Syncc9605_1362	-	hypothetical protein
1338	 62.59	0	1277902..1279887	-	661	78212893	uvrC	Syncc9605_1363	-	excinuclease ABC subunit C
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.