IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.39   STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
73	 60.00	0	74734..75063	+	109	78211631	-	Syncc9605_0076	-	photosystem II reaction center protein Z
74	 64.60	0	75127..75609	+	160	78211632	ribH	Syncc9605_0077	-	riboflavin synthase subunit beta
75	 67.51	+1	75614..78325	-	903	78211633	-	Syncc9605_0078	-	DNA mismatch repair protein
76	 70.39	+1	78378..78833	-	151	78211634	-	Syncc9605_0079	-	hypothetical protein
77	 62.87	0	78836..80944	+	702	78211635	-	Syncc9605_0080	-	excinuclease ABC subunit B
78	 59.39	0	81186..83990	+	934	78211636	secA	Syncc9605_0081	-	preprotein translocase subunit SecA
79	 60.51	0	84327..85073	-	248	78211637	-	Syncc9605_0082	-	serine O-acetyltransferase
80	 62.28	0	85084..86085	-	333	78211638	-	Syncc9605_0083	-	GntR family transcriptional regulator
81	 61.11	0	86105..86932	+	275	78211639	-	Syncc9605_0084	-	carboxymethylenebutenolidase
82	 61.47	0	86929..87582	-	217	78211640	infC	Syncc9605_0085	-	translation initiation factor IF-3
83	 66.22	+1	87640..88539	-	299	78211641	-	Syncc9605_0086	-	tRNA delta(2)-isopentenylpyrophosphate transferase
84	 60.62	0	88692..90659	+	655	78211642	gyrB	Syncc9605_0087	-	DNA gyrase subunit B
85	 66.07	+1	90659..90994	+	111	78211643	-	Syncc9605_0088	-	hypothetical protein
86	 62.73	0	90975..91355	+	126	78211644	-	Syncc9605_0089	-	camphor resistance protein CrcB
87	 65.41	0	91348..91746	+	132	78211645	-	Syncc9605_0090	-	putative integral membrane protein
88	 61.71	0	91712..92236	-	174	78211646	-	Syncc9605_0091	-	glutathione peroxidase
89	 62.63	0	92258..93718	+	486	78211647	-	Syncc9605_0092	-	magnesium transporter
90	 58.13	0	93773..94780	+	335	78211648	-	Syncc9605_0093	-	type II alternative sigma-70 family RNA polymerase sigma factor
91	 60.24	0	94783..95685	-	300	78211649	-	Syncc9605_0094	-	hypothetical protein
92	 62.05	0	95750..96703	+	317	78211650	-	Syncc9605_0095	-	MoxR protein
93	 63.98	0	98442..99632	+	396	78211651	-	Syncc9605_0099	-	A/G-specific DNA-adenine glycosylase
94	 63.95	0	99654..100610	+	318	78211652	-	Syncc9605_0100	-	putative fructokinase
95	 63.01	0	100577..101068	-	163	78211653	-	Syncc9605_0101	-	hypothetical protein
96	 60.94	0	101099..102529	+	476	78211654	-	Syncc9605_0102	-	S-adenosyl-L-homocysteine hydrolase
97	 62.12	0	102601..103260	+	219	78211655	-	Syncc9605_0103	-	putative alkaline phosphatase-like protein
98	 62.43	0	103294..103671	-	125	78211656	-	Syncc9605_0104	-	single-strand DNA-binding protein
99	 61.73	0	103814..104866	+	350	78211657	-	Syncc9605_0105	-	cell shape determining protein MreB
100	 66.27	+1	104871..105617	+	248	78211658	-	Syncc9605_0106	-	rod shape-determining protein MreC
101	 63.05	0	105619..106143	+	174	78211659	-	Syncc9605_0107	-	hypothetical protein
102	 65.37	0	106140..107447	+	435	78211660	-	Syncc9605_0108	-	twin-arginine translocation pathway signal
103	 58.01	0	107540..108301	+	253	78211661	-	Syncc9605_0109	-	two component transcriptional regulator
104	 64.02	0	108346..109854	+	502	78211662	lysS	Syncc9605_0110	-	lysyl-tRNA synthetase
105	 64.39	0	109882..110145	+	87	78211663	-	Syncc9605_0111	-	hypothetical protein
106	 62.71	0	110147..110626	-	159	78211664	-	Syncc9605_0112	-	hypothetical protein
107	 54.70	0	110623..110856	-	77	78211665	-	Syncc9605_0113	-	hypothetical protein
108	 63.94	0	110890..111843	-	317	78211666	-	Syncc9605_0114	-	hypothetical protein
109	 63.05	0	111840..113000	-	386	78211667	-	Syncc9605_0115	-	hypothetical protein
110	 64.72	0	113069..114709	+	546	78211668	-	Syncc9605_0116	-	serine/threonine protein kinase
111	 59.08	0	114703..115203	-	166	78211669	smpB	Syncc9605_0117	-	SsrA-binding protein
112	 65.23	0	115254..116300	+	348	78211670	ruvB	Syncc9605_0118	-	Holliday junction DNA helicase B
113	 65.36	0	116297..117061	+	254	78211671	-	Syncc9605_0119	-	hypothetical protein
114	 65.99	+1	117063..118244	+	393	78211672	-	Syncc9605_0120	-	peptidase M20D, amidohydrolase
115	 63.60	0	118241..118468	+	75	78211673	-	Syncc9605_0121	-	hypothetical protein
116	 63.25	0	118465..119079	+	204	78211674	-	Syncc9605_0122	-	hypothetical protein
117	 60.62	0	119212..120666	+	484	78211675	-	Syncc9605_0123	-	thiamine biosynthesis protein ThiC
118	 63.38	0	120807..122816	-	669	78211676	-	Syncc9605_0124	-	transketolase
119	 63.70	0	122871..124118	-	415	78211677	-	Syncc9605_0125	-	3-oxoacyl-[acyl-carrier-protein] synthase II
120	 54.73	0	124127..124369	-	80	161353765	acpP	Syncc9605_0126	-	acyl carrier protein
121	 60.14	0	124486..124761	+	91	78211679	-	Syncc9605_0127	-	photosystem I subunit VII
122	 64.23	0	124816..126705	+	629	78211680	-	Syncc9605_0128	-	D-fructose-6-phosphate amidotransferase
123	 62.56	0	126709..128169	-	486	78211681	-	Syncc9605_0129	-	mannose-1-phosphate guanylyltransferase (GDP)
124	 62.55	0	128246..128779	-	177	78211682	rimM	Syncc9605_0130	-	16S rRNA-processing protein
125	 59.57	0	128880..129020	+	46	78211683	-	Syncc9605_0131	-	hypothetical protein
126	 60.51	0	129025..129852	+	275	78211684	-	Syncc9605_0132	-	VIC family potassium channel protein
127	 64.76	0	129900..130004	-	34	78211685	-	Syncc9605_0133	-	hypothetical protein
128	 54.52	0	130260..131585	+	441	78211686	-	Syncc9605_0134	-	hypothetical protein
129	 47.39	-1	132091..132972	-	293	78211687	-	Syncc9605_0135	-	hypothetical protein
130	 35.43	-2	133070..134215	+	381	78211688	-	Syncc9605_0136	-	hypothetical protein
131	 39.52	-2	134341..134712	+	123	78211689	-	Syncc9605_0137	-	hypothetical protein
132	 57.05	0	135126..135437	-	103	78211690	-	Syncc9605_0138	-	hypothetical protein
133	 60.78	0	135673..136521	-	282	78211691	-	Syncc9605_0139	-	2-dehydro-3-deoxyphosphooctonate aldolase
134	 60.06	0	136719..137429	+	236	78211692	-	Syncc9605_0140	-	hypothetical protein
135	 62.08	0	137429..138148	+	239	78211693	-	Syncc9605_0141	-	3-deoxy-manno-octulosonate cytidylyltransferase
136	 34.57	-2	138531..140147	-	538	78211694	-	Syncc9605_0142	-	hypothetical protein
137	 33.29	-2	140144..142693	-	849	78211695	-	Syncc9605_0143	-	glycosyltransferase-like protein
138	 37.85	-2	142965..143828	-	287	78211696	-	Syncc9605_0144	-	putative sugar nucleotide epimerase/dehydratase
139	 32.47	-2	144154..145191	-	345	78211697	-	Syncc9605_0145	-	hypothetical protein
140	 35.35	-2	145188..146327	-	379	78211698	-	Syncc9605_0146	-	hypothetical protein
141	 33.27	-2	146324..147859	-	511	78211699	-	Syncc9605_0147	-	hypothetical protein
142	 32.73	-2	147856..149841	-	661	78211700	-	Syncc9605_0148	-	hypothetical protein
143	 65.29	0	151016..151741	-	241	78211701	-	Syncc9605_0149	-	RNAse III
144	 61.98	0	152308..152691	+	127	78211702	-	Syncc9605_0150	-	hypothetical protein
145	 59.14	0	152729..153193	+	154	78211703	-	Syncc9605_0151	-	hypothetical protein
146	 60.80	0	153255..155777	-	840	78211704	-	Syncc9605_0152	-	glycogen/starch/alpha-glucan phosphorylase
147	 59.33	0	155990..157366	+	458	78211705	-	Syncc9605_0153	-	CPA2 family Na+/H+ antiporter
148	 62.96	0	157369..157719	-	116	78211706	-	Syncc9605_0154	-	hypothetical protein
149	 62.98	0	157740..158660	+	306	78211707	-	Syncc9605_0155	-	hypothetical protein
150	 63.86	0	158678..159532	+	284	78211708	-	Syncc9605_0156	-	hypothetical protein
151	 67.45	+1	159517..160668	-	383	78211709	-	Syncc9605_0157	-	putative glycolate oxidase subunit GlcE
152	 66.15	+1	160683..162029	+	448	78211710	-	Syncc9605_0158	-	hypothetical protein
153	 66.16	+1	161928..163304	-	458	78211711	-	Syncc9605_0159	-	putative glycolate oxidase subunit (Fe-S) protein
154	 42.32	-2	163572..164294	-	240	78211712	-	Syncc9605_0160	-	hypothetical protein
155	 62.74	0	164316..165740	-	474	78211713	-	Syncc9605_0161	-	isocitrate dehydrogenase
156	 60.78	0	165823..166773	+	316	78211714	-	Syncc9605_0162	-	putative glycosyl transferase family protein
157	 64.06	0	166756..167943	-	395	78211715	-	Syncc9605_0163	-	hypothetical protein
158	 64.95	0	167961..168716	-	251	78211716	-	Syncc9605_0164	-	methylthioadenosine nucleosidase
159	 61.87	0	168821..169237	+	138	78211717	-	Syncc9605_0165	-	hypothetical protein
160	 57.98	0	169313..170026	+	237	78211718	-	Syncc9605_0166	-	Heme oxygenase (decyclizing)
161	 61.85	0	170043..171080	+	345	78211719	-	Syncc9605_0167	-	hypothetical protein
162	 46.44	-2	171147..172985	+	612	78211720	-	Syncc9605_0168	-	ATPase
163	 61.92	0	172985..175240	+	751	78211721	-	Syncc9605_0169	-	glycosyltransferase-like protein
164	 63.29	0	175237..176391	+	384	78211722	-	Syncc9605_0170	-	putative glycosyl transferase, group 1
165	 63.57	0	176384..177643	+	419	78211723	-	Syncc9605_0171	-	glycosyl transferase, group 1
166	 61.96	0	177640..178764	+	374	78211724	-	Syncc9605_0172	-	glycosyl transferase, group 1
167	 62.22	0	178761..179615	+	284	78211725	-	Syncc9605_0173	-	hypothetical protein
168	 59.33	0	179640..180470	-	276	78211726	-	Syncc9605_0174	-	hypothetical protein
169	 58.42	0	180495..181343	-	282	78211727	-	Syncc9605_0175	-	2-dehydro-3-deoxyphosphooctonate aldolase
170	 52.00	-1	181389..182213	-	274	78211728	-	Syncc9605_0176	-	hypothetical protein
171	 57.49	0	182241..183134	-	297	78211729	-	Syncc9605_0177	-	hypothetical protein
172	 62.15	0	183158..185548	+	796	78211730	-	Syncc9605_0178	-	ATP-dependent DNA helicase Rep
59.39	MEAN

6.29	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.