IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1092	 56.19	0	1048278..1048382	+	34	78212648	-	Syncc9605_1115	-	hypothetical protein
1093	 53.70	0	1048539..1048862	-	107	78212649	-	Syncc9605_1116	-	hypothetical protein
1094	 56.58	0	1048902..1049387	-	161	78212650	-	Syncc9605_1117	-	hypothetical protein
1095	 45.01	-2	1049678..1050790	-	370	78212651	-	Syncc9605_1118	-	hypothetical protein
1096	 64.16	0	1050889..1052085	+	398	78212652	-	Syncc9605_1119	-	hypothetical protein
1097	 54.24	0	1052075..1052428	-	117	78212653	-	Syncc9605_1120	-	hypothetical protein
1098	 64.97	0	1052478..1053068	-	196	78212654	-	Syncc9605_1121	-	thylakoidal processing peptidase
1099	 66.79	+1	1053126..1054811	+	561	78212655	-	Syncc9605_1122	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
1100	 64.71	0	1054817..1055686	+	289	78212656	-	Syncc9605_1123	-	naphthoate synthase
1101	 62.50	0	1056292..1057827	+	511	78212657	glgA	Syncc9605_1126	-	glycogen synthase
1102	 64.52	0	1057824..1058615	+	263	78212658	-	Syncc9605_1127	-	hypothetical protein
1103	 63.93	0	1058612..1059961	+	449	78212659	-	Syncc9605_1128	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1104	 62.68	0	1059972..1061324	-	450	78212660	-	Syncc9605_1129	-	UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase
1105	 64.27	0	1061361..1062278	-	305	78212661	-	Syncc9605_1130	-	hypothetical protein
1106	 65.16	0	1062259..1063584	-	441	78212662	-	Syncc9605_1131	-	3-phosphoshikimate 1-carboxyvinyltransferase
1107	 64.17	0	1063609..1065171	-	520	78212663	-	Syncc9605_1132	-	3-octaprenyl-4hydroxybenzoate decarboxylase
1108	 66.12	+1	1065235..1065966	+	243	78212664	-	Syncc9605_1133	-	2-phosphosulfolactate phosphatase
1109	 61.96	0	1065995..1066822	+	275	78212665	-	Syncc9605_1134	-	nitrilase
1110	 65.66	0	1066828..1067922	+	364	78212666	-	Syncc9605_1135	-	N-acetylmuramoyl-L-alanine amidase
1111	 64.16	0	1067919..1068716	+	265	78212667	-	Syncc9605_1136	-	glutamate racemase
1112	 60.91	0	1068754..1069725	+	323	78212668	-	Syncc9605_1137	-	trans-hexaprenyltranstransferase
1113	 63.75	0	1069735..1070385	-	216	78212669	-	Syncc9605_1138	-	HAD family hydrolase
1114	 63.88	0	1070515..1072488	+	657	78212670	-	Syncc9605_1139	-	acetyl-coenzyme A synthetase
1115	 65.71	+1	1072478..1073206	-	242	78212671	-	Syncc9605_1140	-	hypothetical protein
1116	 63.38	0	1073209..1073664	-	151	78212672	-	Syncc9605_1141	-	putative bacterioferritin comigratory protein
1117	 63.58	0	1073750..1074592	+	280	78212673	-	Syncc9605_1142	-	DNA polymerase III, epsilon subunit
1118	 62.22	0	1074672..1074941	+	89	78212674	-	Syncc9605_1143	-	hypothetical protein
1119	 61.88	0	1074989..1075969	+	326	78212675	-	Syncc9605_1144	-	periplasmic phosphate binding protein
1120	 59.59	0	1076152..1077126	+	324	78212676	-	Syncc9605_1145	-	periplasmic phosphate binding protein
1121	 60.85	0	1077309..1077944	+	211	78212677	-	Syncc9605_1146	-	CRP/FNR family transcriptional regulator
1122	 61.48	0	1078114..1078479	-	121	78212678	-	Syncc9605_1147	-	hypothetical protein
1123	 61.20	0	1078716..1079429	-	237	78212679	-	Syncc9605_1148	-	peptide methionine sulfoxide reductase
1124	 59.09	0	1079972..1080235	-	87	78212680	-	Syncc9605_1149	-	putative regulator
1125	 61.18	0	1080303..1082105	-	600	78212681	-	Syncc9605_1150	-	ATPase
1126	 63.87	0	1082154..1083263	+	369	78212682	-	Syncc9605_1151	-	anthranilate phosphoribosyltransferase
1127	 62.19	0	1083271..1084431	+	386	78212683	-	Syncc9605_1152	-	carbamoyl phosphate synthase small subunit
1128	 54.36	0	1084474..1084863	+	129	78212684	-	Syncc9605_1153	-	anti-anti-sigma regulatory factor, SpoIIAA
1129	 61.56	0	1084860..1085270	+	136	78212685	-	Syncc9605_1154	-	hypothetical protein
1130	 63.90	0	1085287..1086915	+	542	78212686	-	Syncc9605_1155	-	RNA methyltransferase TrmH, group 3
1131	 60.99	0	1086948..1087229	+	93	78212687	-	Syncc9605_1156	-	hypothetical protein
1132	 62.06	0	1087246..1088721	+	491	78212688	-	Syncc9605_1157	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
1133	 59.02	0	1088792..1092310	+	1172	78212689	dnaE	Syncc9605_1158	-	DNA polymerase III subunit alpha
1134	 59.18	0	1092347..1092760	-	137	78212690	-	Syncc9605_1159	-	hypothetical protein
1135	 60.00	0	1092773..1093042	-	89	78212691	rpsO	Syncc9605_1160	-	30S ribosomal protein S15
1136	 53.95	0	1093099..1093743	-	214	78212692	-	Syncc9605_1161	-	Holliday junction DNA helicase subunit RuvA
1137	 42.61	-2	1093864..1094208	+	114	78212693	-	Syncc9605_1162	-	putative monovalent cation/H+ antiporter subunit C
1138	 39.90	-2	1094208..1095731	+	507	78212694	-	Syncc9605_1163	-	formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter MnhD subunit-like
1139	 40.35	-2	1095887..1096171	+	94	78212695	-	Syncc9605_1164	-	hypothetical protein
1140	 36.56	-2	1096168..1096446	+	92	78212696	-	Syncc9605_1165	-	hypothetical protein
1141	 35.51	-2	1096450..1096725	+	91	78212697	-	Syncc9605_1166	-	hypothetical protein
1142	 37.00	-2	1096722..1097267	+	181	78212698	-	Syncc9605_1167	-	hypothetical protein
1143	 41.22	-2	1097264..1097986	+	240	78212699	-	Syncc9605_1168	-	putative monovalent cation/H+ antiporter subunit B
1144	 38.62	-2	1097993..1098748	+	251	78212700	-	Syncc9605_1169	-	hypothetical protein
1145	 40.82	-2	1098755..1099489	+	244	78212701	-	Syncc9605_1170	-	phosphosulfolactate synthase
1146	 42.61	-2	1099590..1100441	+	283	78212702	-	Syncc9605_1171	-	extracellular solute-binding protein
1147	 45.88	-2	1100438..1101784	+	448	78212703	-	Syncc9605_1172	-	Na+/H+-dicarboxylate symporters-like
1148	 52.55	-1	1101939..1102271	+	110	78212704	-	Syncc9605_1173	-	hypothetical protein
1149	 63.37	0	1102257..1103165	-	302	78212705	-	Syncc9605_1174	-	hypothetical protein
1150	 62.47	0	1103219..1105267	+	682	78212706	dnaG	Syncc9605_1175	-	DNA primase
1151	 62.40	0	1105323..1105580	+	85	78212707	-	Syncc9605_1176	-	hypothetical protein
1152	 65.99	+1	1105580..1105876	+	98	78212708	-	Syncc9605_1177	-	hypothetical protein
1153	 64.24	0	1105898..1107172	-	424	78212709	-	Syncc9605_1178	-	DNA-directed DNA polymerase
1154	 65.51	0	1107185..1107616	-	143	78212710	-	Syncc9605_1179	-	putative SOS mutagenesis protein UmuD
1155	 63.31	0	1107648..1108094	+	148	78212711	-	Syncc9605_1180	-	hypothetical protein
1156	 62.67	0	1108063..1108662	-	199	78212712	-	Syncc9605_1181	-	hypothetical protein
1157	 51.57	-1	1108665..1109525	-	286	78212713	-	Syncc9605_1182	-	hypothetical protein
1158	 62.07	0	1109535..1109969	-	144	78212714	-	Syncc9605_1183	-	hypothetical protein
1159	 62.47	0	1109966..1110394	-	142	78212715	-	Syncc9605_1184	-	hypothetical protein
1160	 61.45	0	1110398..1110895	-	165	78212716	-	Syncc9605_1185	-	hypothetical protein
1161	 63.48	0	1110962..1111306	+	114	78212717	-	Syncc9605_1186	-	hypothetical protein
1162	 64.24	0	1111340..1112164	+	274	78212718	ksgA	Syncc9605_1187	-	dimethyladenosine transferase
1163	 63.20	0	1112174..1113097	+	307	78212719	-	Syncc9605_1188	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1164	 61.01	0	1113094..1113411	+	105	78212720	-	Syncc9605_1189	-	hypothetical protein
1165	 59.45	0	1113594..1114577	+	327	78212721	-	Syncc9605_1190	-	pyruvate dehydrogenase E1 beta subunit
1166	 61.00	0	1114583..1116064	+	493	78212722	secD	Syncc9605_1191	-	preprotein translocase subunit SecD
1167	 61.52	0	1116068..1117057	+	329	78212723	secF	Syncc9605_1192	-	preprotein translocase subunit SecF
1168	 56.00	0	1117050..1117274	+	74	78212724	-	Syncc9605_1193	-	hypothetical protein
1169	 54.85	0	1117271..1117507	-	78	78212725	-	Syncc9605_1194	-	hypothetical protein
1170	 61.62	0	1117951..1118940	-	329	78212726	-	Syncc9605_1195	-	hypothetical protein
1171	 58.70	0	1118937..1120016	-	359	78212727	-	Syncc9605_1196	-	hypothetical protein
1172	 55.99	0	1120013..1120396	-	127	78212728	-	Syncc9605_1197	-	photosystem II reaction center protein Psb28
1173	 62.84	0	1120427..1121470	-	347	78212729	-	Syncc9605_1198	-	tRNA 2-selenouridine synthase
1174	 60.08	0	1121501..1122229	+	242	78212730	-	Syncc9605_1199	-	hypothetical protein
1175	 62.10	0	1122283..1122720	+	145	78212731	-	Syncc9605_1200	-	putative anti-sigma regulatory factor (serine/threonine protein kinase)
1176	 60.39	0	1122680..1122934	-	84	78212732	-	Syncc9605_1201	-	hypothetical protein
1177	 62.22	0	1122984..1123253	+	89	78212733	-	Syncc9605_1202	-	hypothetical protein
1178	 60.14	0	1123291..1123581	-	96	78212734	-	Syncc9605_1203	-	hypothetical protein
1179	 59.43	0	1123656..1124747	-	363	78212735	-	Syncc9605_1204	-	generic methyl-transferase
1180	 61.74	0	1124844..1126265	-	473	78212736	-	Syncc9605_1205	-	L-glutamine synthetase
1181	 60.95	0	1126472..1126996	+	174	78212737	-	Syncc9605_1206	-	phycobilisome core component-allophycocyanin beta-18 subunit
1182	 60.93	0	1127105..1128289	+	394	78212738	-	Syncc9605_1207	-	alanine-glyoxylate aminotransferase
1183	 62.48	0	1128261..1128785	-	174	78212739	-	Syncc9605_1208	-	tRNA-adenosine deaminase
1184	 63.33	0	1128805..1130214	+	469	78212740	-	Syncc9605_1209	-	pyridoxal-dependent decarboxylase family protein
1185	 62.77	0	1130335..1131924	-	529	78212741	-	Syncc9605_1210	-	small GTP-binding protein domain-containing protein
1186	 61.79	0	1131959..1132450	-	163	78212742	-	Syncc9605_1211	-	lipoprotein signal peptidase
1187	 65.61	0	1132447..1133016	-	189	78212743	-	Syncc9605_1212	-	BioY protein
1188	 62.72	0	1133073..1133300	+	75	78212744	-	Syncc9605_1213	-	hypothetical protein
1189	 65.63	0	1133297..1134553	-	418	78212745	-	Syncc9605_1214	-	Zn-dependent peptidase
1190	 62.15	0	1134550..1135833	-	427	78212746	-	Syncc9605_1215	-	Zn-dependent peptidase
1191	 62.50	0	1135852..1136595	+	247	78212747	-	Syncc9605_1216	-	phycocyanobilin:ferredoxin oxidoreductase
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.