IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1030	 61.04	0	1002241..1002471	+	76	78212586	-	Syncc9605_1053	-	hypothetical protein
1031	 63.47	0	1002448..1003197	-	249	78212587	-	Syncc9605_1054	-	hypothetical protein
1032	 59.24	0	1003215..1003712	-	165	78212588	-	Syncc9605_1055	-	hypothetical protein
1033	 53.22	0	1003791..1003961	+	56	78212589	-	Syncc9605_1056	-	hypothetical protein
1034	 52.56	-1	1004441..1004674	+	77	78212590	-	Syncc9605_1057	-	hypothetical protein
1035	 56.84	0	1004751..1005269	+	172	78212591	-	Syncc9605_1058	-	membrane protein
1036	 49.70	-1	1005370..1005534	+	54	78212592	-	Syncc9605_1059	-	hypothetical protein
1037	 52.15	-1	1005541..1005726	+	61	78212593	-	Syncc9605_1060	-	hypothetical protein
1038	 53.03	-1	1005763..1006026	+	87	78212594	-	Syncc9605_1061	-	hypothetical protein
1039	 57.23	0	1006016..1006672	-	218	78212595	-	Syncc9605_1062	-	hypothetical protein
1040	 54.59	0	1006676..1007056	-	126	78212596	-	Syncc9605_1063	-	hypothetical protein
1041	 57.06	0	1007102..1007278	-	58	78212597	rpsU	Syncc9605_1064	-	30S ribosomal protein S21
1042	 60.69	0	1007617..1007934	-	105	78212598	-	Syncc9605_1065	-	hypothetical protein
1043	 58.84	0	1008248..1008745	-	165	78212599	-	Syncc9605_1066	-	hypothetical protein
1044	 50.00	-1	1008749..1010188	-	479	78212600	-	Syncc9605_1067	-	hypothetical protein
1045	 53.19	0	1010212..1010352	+	46	78212601	-	Syncc9605_1068	-	hypothetical protein
1046	 58.96	0	1010360..1010761	-	133	78212602	-	Syncc9605_1069	-	hypothetical protein
1047	 50.57	-1	1011333..1011506	-	57	78212603	-	Syncc9605_1070	-	hypothetical protein
1048	 57.22	0	1012181..1013641	-	486	78212604	-	Syncc9605_1071	-	hypothetical protein
1049	 56.41	0	1013658..1014008	-	116	78212605	-	Syncc9605_1072	-	hypothetical protein
1050	 58.70	0	1014155..1014493	+	112	78212606	-	Syncc9605_1073	-	ATLS1-like light-inducible protein
1051	 54.55	0	1014609..1014707	+	32	78212607	-	Syncc9605_1074	-	hypothetical protein
1052	 58.85	0	1014704..1015573	+	289	78212608	-	Syncc9605_1075	-	hypothetical protein
1053	 58.82	0	1015495..1016565	-	356	78212609	-	Syncc9605_1076	-	putative Rieske (2Fe-2S) family protein
1054	 57.67	0	1016588..1017343	-	251	78212610	-	Syncc9605_1077	-	ATPase
1055	 58.94	0	1017347..1018174	-	275	78212611	-	Syncc9605_1078	-	ABC transporter, nitrate-like
1056	 56.99	0	1018174..1019175	-	333	78212612	-	Syncc9605_1079	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
1057	 60.71	0	1019214..1019918	-	234	78212613	-	Syncc9605_1080	-	hydrogenase accessory protein HypB
1058	 59.90	0	1019941..1020339	-	132	78212614	-	Syncc9605_1081	-	putative hydrogenase expression/formation protein HypA2
1059	 58.69	0	1020343..1021533	-	396	78212615	-	Syncc9605_1082	-	agmatinase
1060	 53.33	0	1022211..1022465	+	84	78212616	-	Syncc9605_1083	-	hypothetical protein
1061	 56.45	0	1022601..1022786	-	61	78212617	-	Syncc9605_1084	-	hypothetical protein
1062	 60.24	0	1022855..1023181	+	108	78212618	-	Syncc9605_1085	-	hypothetical protein
1063	 58.22	0	1023684..1023896	+	70	78212619	-	Syncc9605_1086	-	hypothetical protein
1064	 59.61	0	1023953..1024618	+	221	78212620	-	Syncc9605_1087	-	short-chain dehydrogenase/reductase
1065	 59.07	0	1024634..1025410	+	258	78212621	-	Syncc9605_1088	-	heat shock protein DnaJ-like
1066	 55.34	0	1025404..1025712	-	102	78212622	-	Syncc9605_1089	-	hypothetical protein
1067	 52.43	-1	1026199..1026465	+	88	78212623	-	Syncc9605_1090	-	hypothetical protein
1068	 59.28	0	1026568..1027122	+	184	78212624	-	Syncc9605_1091	-	hypothetical protein
1069	 52.67	-1	1027477..1027626	+	49	78212625	-	Syncc9605_1092	-	hypothetical protein
1070	 61.59	0	1028073..1029707	+	544	78212626	-	Syncc9605_1093	-	zeta-carotene desaturase-like
1071	 57.75	0	1029710..1029922	-	70	78212627	-	Syncc9605_1094	-	hypothetical protein
1072	 60.92	0	1031232..1032659	+	475	78212628	-	Syncc9605_1095	-	porin
1073	 55.88	0	1032569..1033189	-	206	78212629	-	Syncc9605_1096	-	phosphonate-binding periplasmic protein
1074	 54.51	0	1033234..1033998	-	254	78212630	-	Syncc9605_1097	-	ATPase
1075	 53.59	0	1035366..1035755	-	129	78212631	-	Syncc9605_1098	-	hypothetical protein
1076	 47.88	-1	1035772..1036149	+	125	78212632	-	Syncc9605_1099	-	hypothetical protein
1077	 60.14	0	1036350..1037360	+	336	78212633	-	Syncc9605_1100	-	ACR3 family arsenite transporter
1078	 63.38	0	1037374..1038558	+	394	78212634	-	Syncc9605_1101	-	chromate transporter
1079	 57.02	0	1038545..1038886	-	113	78212635	-	Syncc9605_1102	-	hypothetical protein
1080	 54.31	0	1039554..1039820	-	88	78212636	-	Syncc9605_1103	-	hypothetical protein
1081	 55.30	0	1039856..1040119	-	87	78212637	-	Syncc9605_1104	-	hypothetical protein
1082	 57.27	0	1040100..1040663	-	187	78212638	-	Syncc9605_1105	-	hypothetical protein
1083	 58.60	0	1040773..1042074	-	433	78212639	-	Syncc9605_1106	-	flavoprotein involved in K+ transport
1084	 52.17	-1	1042254..1042736	+	160	78212640	-	Syncc9605_1107	-	hypothetical protein
1085	 58.56	0	1042759..1043757	+	332	78212641	-	Syncc9605_1108	-	nitrilase
1086	 59.50	0	1043750..1044838	+	362	78212642	-	Syncc9605_1109	-	Elongator protein 3/MiaB/NifB
1087	 57.85	0	1044841..1045509	+	222	78212643	-	Syncc9605_1110	-	hypothetical protein
1088	 60.43	0	1045506..1046483	+	325	78212644	-	Syncc9605_1111	-	hypothetical protein
1089	 54.96	0	1046536..1046817	+	93	78212645	-	Syncc9605_1112	-	hypothetical protein
1090	 57.26	0	1046844..1047311	+	155	78212646	-	Syncc9605_1113	-	hypothetical protein
1091	 60.71	0	1047316..1048104	+	262	78212647	-	Syncc9605_1114	-	hypothetical protein
1092	 56.19	0	1048278..1048382	+	34	78212648	-	Syncc9605_1115	-	hypothetical protein
1093	 53.70	0	1048539..1048862	-	107	78212649	-	Syncc9605_1116	-	hypothetical protein
1094	 56.58	0	1048902..1049387	-	161	78212650	-	Syncc9605_1117	-	hypothetical protein
1095	 45.01	-2	1049678..1050790	-	370	78212651	-	Syncc9605_1118	-	hypothetical protein
1096	 64.16	0	1050889..1052085	+	398	78212652	-	Syncc9605_1119	-	hypothetical protein
1097	 54.24	0	1052075..1052428	-	117	78212653	-	Syncc9605_1120	-	hypothetical protein
1098	 64.97	0	1052478..1053068	-	196	78212654	-	Syncc9605_1121	-	thylakoidal processing peptidase
1099	 66.79	+1	1053126..1054811	+	561	78212655	-	Syncc9605_1122	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
1100	 64.71	0	1054817..1055686	+	289	78212656	-	Syncc9605_1123	-	naphthoate synthase
1101	 62.50	0	1056292..1057827	+	511	78212657	glgA	Syncc9605_1126	-	glycogen synthase
1102	 64.52	0	1057824..1058615	+	263	78212658	-	Syncc9605_1127	-	hypothetical protein
1103	 63.93	0	1058612..1059961	+	449	78212659	-	Syncc9605_1128	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1104	 62.68	0	1059972..1061324	-	450	78212660	-	Syncc9605_1129	-	UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase
1105	 64.27	0	1061361..1062278	-	305	78212661	-	Syncc9605_1130	-	hypothetical protein
1106	 65.16	0	1062259..1063584	-	441	78212662	-	Syncc9605_1131	-	3-phosphoshikimate 1-carboxyvinyltransferase
1107	 64.17	0	1063609..1065171	-	520	78212663	-	Syncc9605_1132	-	3-octaprenyl-4hydroxybenzoate decarboxylase
1108	 66.12	+1	1065235..1065966	+	243	78212664	-	Syncc9605_1133	-	2-phosphosulfolactate phosphatase
1109	 61.96	0	1065995..1066822	+	275	78212665	-	Syncc9605_1134	-	nitrilase
1110	 65.66	0	1066828..1067922	+	364	78212666	-	Syncc9605_1135	-	N-acetylmuramoyl-L-alanine amidase
1111	 64.16	0	1067919..1068716	+	265	78212667	-	Syncc9605_1136	-	glutamate racemase
1112	 60.91	0	1068754..1069725	+	323	78212668	-	Syncc9605_1137	-	trans-hexaprenyltranstransferase
1113	 63.75	0	1069735..1070385	-	216	78212669	-	Syncc9605_1138	-	HAD family hydrolase
1114	 63.88	0	1070515..1072488	+	657	78212670	-	Syncc9605_1139	-	acetyl-coenzyme A synthetase
1115	 65.71	+1	1072478..1073206	-	242	78212671	-	Syncc9605_1140	-	hypothetical protein
1116	 63.38	0	1073209..1073664	-	151	78212672	-	Syncc9605_1141	-	putative bacterioferritin comigratory protein
1117	 63.58	0	1073750..1074592	+	280	78212673	-	Syncc9605_1142	-	DNA polymerase III, epsilon subunit
1118	 62.22	0	1074672..1074941	+	89	78212674	-	Syncc9605_1143	-	hypothetical protein
1119	 61.88	0	1074989..1075969	+	326	78212675	-	Syncc9605_1144	-	periplasmic phosphate binding protein
1120	 59.59	0	1076152..1077126	+	324	78212676	-	Syncc9605_1145	-	periplasmic phosphate binding protein
1121	 60.85	0	1077309..1077944	+	211	78212677	-	Syncc9605_1146	-	CRP/FNR family transcriptional regulator
1122	 61.48	0	1078114..1078479	-	121	78212678	-	Syncc9605_1147	-	hypothetical protein
1123	 61.20	0	1078716..1079429	-	237	78212679	-	Syncc9605_1148	-	peptide methionine sulfoxide reductase
1124	 59.09	0	1079972..1080235	-	87	78212680	-	Syncc9605_1149	-	putative regulator
1125	 61.18	0	1080303..1082105	-	600	78212681	-	Syncc9605_1150	-	ATPase
1126	 63.87	0	1082154..1083263	+	369	78212682	-	Syncc9605_1151	-	anthranilate phosphoribosyltransferase
1127	 62.19	0	1083271..1084431	+	386	78212683	-	Syncc9605_1152	-	carbamoyl phosphate synthase small subunit
1128	 54.36	0	1084474..1084863	+	129	78212684	-	Syncc9605_1153	-	anti-anti-sigma regulatory factor, SpoIIAA
1129	 61.56	0	1084860..1085270	+	136	78212685	-	Syncc9605_1154	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.