IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1001	 62.56	0	970841..971278	-	145	78212557	-	Syncc9605_1023	-	hypothetical protein
1002	 63.12	0	971372..975793	+	1473	78212558	-	Syncc9605_1024	-	hypothetical protein
1003	 66.56	+1	975797..976705	+	302	78212559	-	Syncc9605_1025	-	sugar kinase
1004	 64.68	0	976714..978021	+	435	78212560	-	Syncc9605_1026	-	glutamate-5-semialdehyde dehydrogenase
1005	 61.02	0	978021..978392	+	123	78212561	-	Syncc9605_1027	-	dihydroneopterin aldolase
1006	 63.19	0	978401..978976	+	191	78212562	-	Syncc9605_1028	-	lipase family protein
1007	 62.82	0	978979..981081	-	700	78212563	-	Syncc9605_1029	-	oligopeptidase A
1008	 60.29	0	981083..982618	-	511	78212564	-	Syncc9605_1030	-	NAD(P)H-quinone oxidoreductase subunit 4
1009	 65.82	+1	982676..983623	-	315	78212565	-	Syncc9605_1031	-	homoserine kinase
1010	 64.25	0	983638..984672	-	344	78212566	-	Syncc9605_1032	-	glucokinase
1011	 61.87	0	984708..985103	-	131	78212567	-	Syncc9605_1033	-	hypothetical protein
1012	 61.55	0	985100..986935	-	611	78212568	-	Syncc9605_1034	-	Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
1013	 62.46	0	986939..987295	+	118	78212569	-	Syncc9605_1035	-	hypothetical protein
1014	 62.66	0	987280..987903	-	207	78212570	-	Syncc9605_1036	-	muramidase
1015	 61.44	0	988189..989202	-	337	78212571	-	Syncc9605_1037	-	tryptophanyl-tRNA synthetase
1016	 65.89	+1	989206..989721	-	171	78212572	-	Syncc9605_1038	-	hypothetical protein
1017	 62.31	0	989738..990265	-	175	78212573	-	Syncc9605_1039	-	hypothetical protein
1018	 61.70	0	990258..991184	-	308	78212574	-	Syncc9605_1040	-	cation diffusion facilitator family transporter
1019	 64.80	0	991330..992613	+	427	78212575	-	Syncc9605_1041	-	hypothetical protein
1020	 58.59	0	992755..993831	+	358	78212576	-	Syncc9605_1042	-	photosystem q(b) protein
1021	 65.88	+1	993951..994205	-	84	78212577	-	Syncc9605_1043	-	hypothetical protein
1022	 60.10	0	994280..994477	+	65	78212578	-	Syncc9605_1044	-	hypothetical protein
1023	 61.11	0	995069..995608	-	179	78212579	-	Syncc9605_1045	-	hypothetical protein
1024	 58.61	0	995601..996047	-	148	78212580	-	Syncc9605_1046	-	transcriptional regulator
1025	 56.00	0	996047..997087	-	346	78212581	-	Syncc9605_1047	-	hypothetical protein
1026	 55.99	0	998432..998890	+	152	78212582	-	Syncc9605_1049	-	hypothetical protein
1027	 45.61	-2	1000022..1000591	-	189	78212583	-	Syncc9605_1050	-	hypothetical protein
1028	 55.20	0	1000926..1001204	-	92	78212584	-	Syncc9605_1051	-	hypothetical protein
1029	 56.90	0	1001874..1002170	-	98	78212585	-	Syncc9605_1052	-	hypothetical protein
1030	 61.04	0	1002241..1002471	+	76	78212586	-	Syncc9605_1053	-	hypothetical protein
1031	 63.47	0	1002448..1003197	-	249	78212587	-	Syncc9605_1054	-	hypothetical protein
1032	 59.24	0	1003215..1003712	-	165	78212588	-	Syncc9605_1055	-	hypothetical protein
1033	 53.22	0	1003791..1003961	+	56	78212589	-	Syncc9605_1056	-	hypothetical protein
1034	 52.56	-1	1004441..1004674	+	77	78212590	-	Syncc9605_1057	-	hypothetical protein
1035	 56.84	0	1004751..1005269	+	172	78212591	-	Syncc9605_1058	-	membrane protein
1036	 49.70	-1	1005370..1005534	+	54	78212592	-	Syncc9605_1059	-	hypothetical protein
1037	 52.15	-1	1005541..1005726	+	61	78212593	-	Syncc9605_1060	-	hypothetical protein
1038	 53.03	-1	1005763..1006026	+	87	78212594	-	Syncc9605_1061	-	hypothetical protein
1039	 57.23	0	1006016..1006672	-	218	78212595	-	Syncc9605_1062	-	hypothetical protein
1040	 54.59	0	1006676..1007056	-	126	78212596	-	Syncc9605_1063	-	hypothetical protein
1041	 57.06	0	1007102..1007278	-	58	78212597	rpsU	Syncc9605_1064	-	30S ribosomal protein S21
1042	 60.69	0	1007617..1007934	-	105	78212598	-	Syncc9605_1065	-	hypothetical protein
1043	 58.84	0	1008248..1008745	-	165	78212599	-	Syncc9605_1066	-	hypothetical protein
1044	 50.00	-1	1008749..1010188	-	479	78212600	-	Syncc9605_1067	-	hypothetical protein
1045	 53.19	0	1010212..1010352	+	46	78212601	-	Syncc9605_1068	-	hypothetical protein
1046	 58.96	0	1010360..1010761	-	133	78212602	-	Syncc9605_1069	-	hypothetical protein
1047	 50.57	-1	1011333..1011506	-	57	78212603	-	Syncc9605_1070	-	hypothetical protein
1048	 57.22	0	1012181..1013641	-	486	78212604	-	Syncc9605_1071	-	hypothetical protein
1049	 56.41	0	1013658..1014008	-	116	78212605	-	Syncc9605_1072	-	hypothetical protein
1050	 58.70	0	1014155..1014493	+	112	78212606	-	Syncc9605_1073	-	ATLS1-like light-inducible protein
1051	 54.55	0	1014609..1014707	+	32	78212607	-	Syncc9605_1074	-	hypothetical protein
1052	 58.85	0	1014704..1015573	+	289	78212608	-	Syncc9605_1075	-	hypothetical protein
1053	 58.82	0	1015495..1016565	-	356	78212609	-	Syncc9605_1076	-	putative Rieske (2Fe-2S) family protein
1054	 57.67	0	1016588..1017343	-	251	78212610	-	Syncc9605_1077	-	ATPase
1055	 58.94	0	1017347..1018174	-	275	78212611	-	Syncc9605_1078	-	ABC transporter, nitrate-like
1056	 56.99	0	1018174..1019175	-	333	78212612	-	Syncc9605_1079	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
1057	 60.71	0	1019214..1019918	-	234	78212613	-	Syncc9605_1080	-	hydrogenase accessory protein HypB
1058	 59.90	0	1019941..1020339	-	132	78212614	-	Syncc9605_1081	-	putative hydrogenase expression/formation protein HypA2
1059	 58.69	0	1020343..1021533	-	396	78212615	-	Syncc9605_1082	-	agmatinase
1060	 53.33	0	1022211..1022465	+	84	78212616	-	Syncc9605_1083	-	hypothetical protein
1061	 56.45	0	1022601..1022786	-	61	78212617	-	Syncc9605_1084	-	hypothetical protein
1062	 60.24	0	1022855..1023181	+	108	78212618	-	Syncc9605_1085	-	hypothetical protein
1063	 58.22	0	1023684..1023896	+	70	78212619	-	Syncc9605_1086	-	hypothetical protein
1064	 59.61	0	1023953..1024618	+	221	78212620	-	Syncc9605_1087	-	short-chain dehydrogenase/reductase
1065	 59.07	0	1024634..1025410	+	258	78212621	-	Syncc9605_1088	-	heat shock protein DnaJ-like
1066	 55.34	0	1025404..1025712	-	102	78212622	-	Syncc9605_1089	-	hypothetical protein
1067	 52.43	-1	1026199..1026465	+	88	78212623	-	Syncc9605_1090	-	hypothetical protein
1068	 59.28	0	1026568..1027122	+	184	78212624	-	Syncc9605_1091	-	hypothetical protein
1069	 52.67	-1	1027477..1027626	+	49	78212625	-	Syncc9605_1092	-	hypothetical protein
1070	 61.59	0	1028073..1029707	+	544	78212626	-	Syncc9605_1093	-	zeta-carotene desaturase-like
1071	 57.75	0	1029710..1029922	-	70	78212627	-	Syncc9605_1094	-	hypothetical protein
1072	 60.92	0	1031232..1032659	+	475	78212628	-	Syncc9605_1095	-	porin
1073	 55.88	0	1032569..1033189	-	206	78212629	-	Syncc9605_1096	-	phosphonate-binding periplasmic protein
1074	 54.51	0	1033234..1033998	-	254	78212630	-	Syncc9605_1097	-	ATPase
1075	 53.59	0	1035366..1035755	-	129	78212631	-	Syncc9605_1098	-	hypothetical protein
1076	 47.88	-1	1035772..1036149	+	125	78212632	-	Syncc9605_1099	-	hypothetical protein
1077	 60.14	0	1036350..1037360	+	336	78212633	-	Syncc9605_1100	-	ACR3 family arsenite transporter
1078	 63.38	0	1037374..1038558	+	394	78212634	-	Syncc9605_1101	-	chromate transporter
1079	 57.02	0	1038545..1038886	-	113	78212635	-	Syncc9605_1102	-	hypothetical protein
1080	 54.31	0	1039554..1039820	-	88	78212636	-	Syncc9605_1103	-	hypothetical protein
1081	 55.30	0	1039856..1040119	-	87	78212637	-	Syncc9605_1104	-	hypothetical protein
1082	 57.27	0	1040100..1040663	-	187	78212638	-	Syncc9605_1105	-	hypothetical protein
1083	 58.60	0	1040773..1042074	-	433	78212639	-	Syncc9605_1106	-	flavoprotein involved in K+ transport
1084	 52.17	-1	1042254..1042736	+	160	78212640	-	Syncc9605_1107	-	hypothetical protein
1085	 58.56	0	1042759..1043757	+	332	78212641	-	Syncc9605_1108	-	nitrilase
1086	 59.50	0	1043750..1044838	+	362	78212642	-	Syncc9605_1109	-	Elongator protein 3/MiaB/NifB
1087	 57.85	0	1044841..1045509	+	222	78212643	-	Syncc9605_1110	-	hypothetical protein
1088	 60.43	0	1045506..1046483	+	325	78212644	-	Syncc9605_1111	-	hypothetical protein
1089	 54.96	0	1046536..1046817	+	93	78212645	-	Syncc9605_1112	-	hypothetical protein
1090	 57.26	0	1046844..1047311	+	155	78212646	-	Syncc9605_1113	-	hypothetical protein
1091	 60.71	0	1047316..1048104	+	262	78212647	-	Syncc9605_1114	-	hypothetical protein
1092	 56.19	0	1048278..1048382	+	34	78212648	-	Syncc9605_1115	-	hypothetical protein
1093	 53.70	0	1048539..1048862	-	107	78212649	-	Syncc9605_1116	-	hypothetical protein
1094	 56.58	0	1048902..1049387	-	161	78212650	-	Syncc9605_1117	-	hypothetical protein
1095	 45.01	-2	1049678..1050790	-	370	78212651	-	Syncc9605_1118	-	hypothetical protein
1096	 64.16	0	1050889..1052085	+	398	78212652	-	Syncc9605_1119	-	hypothetical protein
1097	 54.24	0	1052075..1052428	-	117	78212653	-	Syncc9605_1120	-	hypothetical protein
1098	 64.97	0	1052478..1053068	-	196	78212654	-	Syncc9605_1121	-	thylakoidal processing peptidase
1099	 66.79	+1	1053126..1054811	+	561	78212655	-	Syncc9605_1122	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
1100	 64.71	0	1054817..1055686	+	289	78212656	-	Syncc9605_1123	-	naphthoate synthase
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.