IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.39   STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
958	 60.39	0	935292..936980	-	562	78212514	-	Syncc9605_0980	-	cytochrome-c oxidase
959	 61.11	0	936984..937919	-	311	78212515	-	Syncc9605_0981	-	cytochrome c oxidase subunit II
960	 63.61	0	937916..938536	-	206	78212516	-	Syncc9605_0982	-	hypothetical protein
961	 60.55	0	938533..939039	-	168	78212517	-	Syncc9605_0983	-	hypothetical protein
962	 62.62	0	939145..940230	-	361	78212518	-	Syncc9605_0984	-	K+-dependent Na+/Ca+ exchanger related-protein
963	 60.85	0	940312..941961	+	549	78212519	-	Syncc9605_0985	-	putative sulfate transporter
964	 59.50	0	941954..943000	+	348	78212520	-	Syncc9605_0986	-	dihydroorotase
965	 56.44	0	942975..943277	+	100	78212521	-	Syncc9605_0987	-	hypothetical protein
966	 56.35	0	943414..943665	+	83	78212522	-	Syncc9605_0988	-	inorganic carbon transport protein
967	 56.86	0	943667..944023	+	118	78212523	-	Syncc9605_0989	-	hypothetical protein
968	 60.48	0	944001..944873	+	290	78212524	trpA	Syncc9605_0990	-	tryptophan synthase subunit alpha
969	 52.15	-1	944954..945325	-	123	78212525	-	Syncc9605_0991	-	transcriptional regulator AbrB
970	 55.93	0	945424..945693	+	89	161353763	-	Syncc9605_0992	-	YciI-like protein
971	 63.49	0	945669..945983	-	104	78212527	-	Syncc9605_0993	-	cytochrome c6 (soluble cytochrome f) (cytochrome c553)
972	 58.12	0	946045..946278	-	77	78212528	-	Syncc9605_0994	-	hypothetical protein
973	 62.64	0	946368..946889	+	173	78212529	-	Syncc9605_0995	-	hypothetical protein
974	 56.77	0	947377..947871	-	164	78212530	-	Syncc9605_0996	-	hypothetical protein
975	 59.80	0	947877..948080	-	67	78212531	-	Syncc9605_0997	-	hypothetical protein
976	 58.88	0	948160..948480	-	106	78212532	-	Syncc9605_0998	-	hypothetical protein
977	 63.59	0	948518..948907	-	129	78212533	-	Syncc9605_0999	-	hypothetical protein
978	 58.39	0	948952..949881	-	309	78212534	-	Syncc9605_1000	-	type II alternative RNA polymerase sigma factor
979	 59.15	0	950059..950550	+	163	78212535	-	Syncc9605_1001	-	hypothetical protein
980	 63.66	0	950550..951215	+	221	78212536	-	Syncc9605_1002	-	hypothetical protein
981	 59.21	0	951262..951918	+	218	78212537	-	Syncc9605_1003	-	hypothetical protein
982	 63.75	0	951915..952634	-	239	78212538	-	Syncc9605_1004	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
983	 55.76	0	952650..953135	+	161	78212539	-	Syncc9605_1005	-	hypothetical protein
984	 55.04	0	953343..953987	+	214	78212540	-	Syncc9605_1006	-	hypothetical protein
985	 61.34	0	953976..956564	-	862	78212541	-	Syncc9605_1007	-	ATPase
986	 59.90	0	956703..956909	+	68	78212542	-	Syncc9605_1008	-	hypothetical protein
987	 44.19	-2	959323..959709	-	128	78212543	-	Syncc9605_1009	-	hypothetical protein
988	 52.60	-1	959843..960169	-	108	78212544	-	Syncc9605_1010	-	hypothetical protein
989	 52.27	-1	960426..960689	+	87	78212545	-	Syncc9605_1011	-	hypothetical protein
990	 57.48	0	961444..961737	-	97	78212546	-	Syncc9605_1012	-	hypothetical protein
991	 63.43	0	961742..962266	-	174	78212547	-	Syncc9605_1013	-	hypothetical protein
992	 58.14	0	962406..962792	-	128	78212548	-	Syncc9605_1014	-	cytochrome c6 (soluble cytochrome f) (cytochrome c553)
993	 60.10	0	962916..963296	-	126	78212549	-	Syncc9605_1015	-	plastocyanin
994	 61.67	0	963283..964302	-	339	78212550	-	Syncc9605_1016	-	hypothetical protein
995	 61.66	0	964299..965357	-	352	78212551	hemE	Syncc9605_1017	-	uroporphyrinogen decarboxylase
996	 59.27	0	965439..967736	-	765	78212552	-	Syncc9605_1018	-	glycogen branching enzyme
997	 60.13	0	967797..968546	-	249	78212553	-	Syncc9605_1019	-	hypothetical protein
998	 64.49	0	968518..970122	-	534	78212554	-	Syncc9605_1020	-	acyl esterase
999	 54.17	0	970112..970423	-	103	78212555	-	Syncc9605_1021	-	hypothetical protein
1000	 62.19	0	970440..970841	-	133	78212556	-	Syncc9605_1022	-	hypothetical protein
1001	 62.56	0	970841..971278	-	145	78212557	-	Syncc9605_1023	-	hypothetical protein
1002	 63.12	0	971372..975793	+	1473	78212558	-	Syncc9605_1024	-	hypothetical protein
1003	 66.56	+1	975797..976705	+	302	78212559	-	Syncc9605_1025	-	sugar kinase
1004	 64.68	0	976714..978021	+	435	78212560	-	Syncc9605_1026	-	glutamate-5-semialdehyde dehydrogenase
1005	 61.02	0	978021..978392	+	123	78212561	-	Syncc9605_1027	-	dihydroneopterin aldolase
1006	 63.19	0	978401..978976	+	191	78212562	-	Syncc9605_1028	-	lipase family protein
1007	 62.82	0	978979..981081	-	700	78212563	-	Syncc9605_1029	-	oligopeptidase A
1008	 60.29	0	981083..982618	-	511	78212564	-	Syncc9605_1030	-	NAD(P)H-quinone oxidoreductase subunit 4
1009	 65.82	+1	982676..983623	-	315	78212565	-	Syncc9605_1031	-	homoserine kinase
1010	 64.25	0	983638..984672	-	344	78212566	-	Syncc9605_1032	-	glucokinase
1011	 61.87	0	984708..985103	-	131	78212567	-	Syncc9605_1033	-	hypothetical protein
1012	 61.55	0	985100..986935	-	611	78212568	-	Syncc9605_1034	-	Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
1013	 62.46	0	986939..987295	+	118	78212569	-	Syncc9605_1035	-	hypothetical protein
1014	 62.66	0	987280..987903	-	207	78212570	-	Syncc9605_1036	-	muramidase
1015	 61.44	0	988189..989202	-	337	78212571	-	Syncc9605_1037	-	tryptophanyl-tRNA synthetase
1016	 65.89	+1	989206..989721	-	171	78212572	-	Syncc9605_1038	-	hypothetical protein
1017	 62.31	0	989738..990265	-	175	78212573	-	Syncc9605_1039	-	hypothetical protein
1018	 61.70	0	990258..991184	-	308	78212574	-	Syncc9605_1040	-	cation diffusion facilitator family transporter
1019	 64.80	0	991330..992613	+	427	78212575	-	Syncc9605_1041	-	hypothetical protein
1020	 58.59	0	992755..993831	+	358	78212576	-	Syncc9605_1042	-	photosystem q(b) protein
1021	 65.88	+1	993951..994205	-	84	78212577	-	Syncc9605_1043	-	hypothetical protein
1022	 60.10	0	994280..994477	+	65	78212578	-	Syncc9605_1044	-	hypothetical protein
1023	 61.11	0	995069..995608	-	179	78212579	-	Syncc9605_1045	-	hypothetical protein
1024	 58.61	0	995601..996047	-	148	78212580	-	Syncc9605_1046	-	transcriptional regulator
1025	 56.00	0	996047..997087	-	346	78212581	-	Syncc9605_1047	-	hypothetical protein
1026	 55.99	0	998432..998890	+	152	78212582	-	Syncc9605_1049	-	hypothetical protein
1027	 45.61	-2	1000022..1000591	-	189	78212583	-	Syncc9605_1050	-	hypothetical protein
1028	 55.20	0	1000926..1001204	-	92	78212584	-	Syncc9605_1051	-	hypothetical protein
1029	 56.90	0	1001874..1002170	-	98	78212585	-	Syncc9605_1052	-	hypothetical protein
1030	 61.04	0	1002241..1002471	+	76	78212586	-	Syncc9605_1053	-	hypothetical protein
1031	 63.47	0	1002448..1003197	-	249	78212587	-	Syncc9605_1054	-	hypothetical protein
1032	 59.24	0	1003215..1003712	-	165	78212588	-	Syncc9605_1055	-	hypothetical protein
1033	 53.22	0	1003791..1003961	+	56	78212589	-	Syncc9605_1056	-	hypothetical protein
1034	 52.56	-1	1004441..1004674	+	77	78212590	-	Syncc9605_1057	-	hypothetical protein
1035	 56.84	0	1004751..1005269	+	172	78212591	-	Syncc9605_1058	-	membrane protein
1036	 49.70	-1	1005370..1005534	+	54	78212592	-	Syncc9605_1059	-	hypothetical protein
1037	 52.15	-1	1005541..1005726	+	61	78212593	-	Syncc9605_1060	-	hypothetical protein
1038	 53.03	-1	1005763..1006026	+	87	78212594	-	Syncc9605_1061	-	hypothetical protein
1039	 57.23	0	1006016..1006672	-	218	78212595	-	Syncc9605_1062	-	hypothetical protein
1040	 54.59	0	1006676..1007056	-	126	78212596	-	Syncc9605_1063	-	hypothetical protein
1041	 57.06	0	1007102..1007278	-	58	78212597	rpsU	Syncc9605_1064	-	30S ribosomal protein S21
1042	 60.69	0	1007617..1007934	-	105	78212598	-	Syncc9605_1065	-	hypothetical protein
1043	 58.84	0	1008248..1008745	-	165	78212599	-	Syncc9605_1066	-	hypothetical protein
1044	 50.00	-1	1008749..1010188	-	479	78212600	-	Syncc9605_1067	-	hypothetical protein
1045	 53.19	0	1010212..1010352	+	46	78212601	-	Syncc9605_1068	-	hypothetical protein
1046	 58.96	0	1010360..1010761	-	133	78212602	-	Syncc9605_1069	-	hypothetical protein
1047	 50.57	-1	1011333..1011506	-	57	78212603	-	Syncc9605_1070	-	hypothetical protein
1048	 57.22	0	1012181..1013641	-	486	78212604	-	Syncc9605_1071	-	hypothetical protein
1049	 56.41	0	1013658..1014008	-	116	78212605	-	Syncc9605_1072	-	hypothetical protein
1050	 58.70	0	1014155..1014493	+	112	78212606	-	Syncc9605_1073	-	ATLS1-like light-inducible protein
1051	 54.55	0	1014609..1014707	+	32	78212607	-	Syncc9605_1074	-	hypothetical protein
1052	 58.85	0	1014704..1015573	+	289	78212608	-	Syncc9605_1075	-	hypothetical protein
1053	 58.82	0	1015495..1016565	-	356	78212609	-	Syncc9605_1076	-	putative Rieske (2Fe-2S) family protein
1054	 57.67	0	1016588..1017343	-	251	78212610	-	Syncc9605_1077	-	ATPase
1055	 58.94	0	1017347..1018174	-	275	78212611	-	Syncc9605_1078	-	ABC transporter, nitrate-like
1056	 56.99	0	1018174..1019175	-	333	78212612	-	Syncc9605_1079	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
1057	 60.71	0	1019214..1019918	-	234	78212613	-	Syncc9605_1080	-	hydrogenase accessory protein HypB
59.39	MEAN

6.29	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.