IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.39   STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.67	0	231..1388	+	385	78211559	-	Syncc9605_0001	-	DNA polymerase III subunit beta
2	 60.71	0	1390..2145	+	251	78211560	-	Syncc9605_0002	-	hypothetical protein
3	 63.16	0	2186..4492	+	768	78211561	-	Syncc9605_0003	-	phosphoribosylformylglycinamidine synthase II
4	 52.26	-1	4554..6011	+	485	78211562	-	Syncc9605_0004	-	amidophosphoribosyltransferase
5	 61.00	0	6019..8487	-	822	78211563	-	Syncc9605_0005	-	DNA topoisomerase IV subunit A
6	 61.11	0	8533..9414	-	293	78211564	-	Syncc9605_0006	-	hypothetical protein
7	 62.32	0	9434..10399	-	321	78211565	-	Syncc9605_0007	-	4Fe-4S cluster binding
8	 61.57	0	10436..11083	+	215	78211566	-	Syncc9605_0008	-	hypothetical protein
9	 54.83	0	11134..11868	+	244	78211567	-	Syncc9605_0009	-	hypothetical protein
10	 61.32	0	11872..12507	+	211	78211568	nusB	Syncc9605_0010	-	transcription antitermination protein NusB
11	 61.40	0	12507..14045	+	512	78211569	-	Syncc9605_0011	-	signal recognition particle-docking protein FtsY
12	 62.56	0	14081..15493	+	470	78211570	-	Syncc9605_0012	-	serine phosphatase
13	 60.39	0	15522..16940	+	472	78211571	-	Syncc9605_0013	-	argininosuccinate lyase
14	 63.98	0	17067..17588	+	173	78211572	-	Syncc9605_0014	-	RNA recognition motif-containing protein
15	 64.26	0	17602..18597	-	331	78211573	-	Syncc9605_0015	-	tRNA-dihydrouridine synthase A
16	 60.91	0	18638..19141	+	167	78211574	-	Syncc9605_0016	-	methionine sulfoxide reductase B
17	 64.78	0	19113..20381	+	422	78211575	-	Syncc9605_0017	-	hypothetical protein
18	 60.49	0	20356..21003	-	215	78211576	-	Syncc9605_0018	-	Type II secretory pathway component PulF-like
19	 60.39	0	21023..22105	-	360	78211577	-	Syncc9605_0019	-	twitching motility protein
20	 63.86	0	24056..24733	+	225	78211578	-	Syncc9605_0023	-	putative heat shock protein GrpE
21	 64.29	0	24733..25869	+	378	78211579	-	Syncc9605_0024	-	heat shock protein DnaJ
22	 60.09	0	25866..26093	+	75	78211580	-	Syncc9605_0025	-	hypothetical protein
23	 65.25	0	26086..27000	+	304	78211581	-	Syncc9605_0026	-	GTPase EngC
24	 63.16	0	26975..27316	-	113	78211582	-	Syncc9605_0027	-	hypothetical protein
25	 63.34	0	27341..28243	-	300	78211583	-	Syncc9605_0028	-	UDP-N-acetylmuramate dehydrogenase
26	 62.84	0	28240..29649	-	469	78211584	-	Syncc9605_0029	-	UDP-N-acetylmuramate--L-alanine ligase
27	 61.11	0	29810..30835	+	341	78211585	-	Syncc9605_0030	-	glyceraldehyde 3-phosphate dehydrogenase (NADP+)
28	 64.44	0	30924..31910	-	328	78211586	-	Syncc9605_0031	-	thiamine-monophosphate kinase
29	 60.91	0	31907..32983	-	358	78211587	-	Syncc9605_0032	-	putative cyclophilin-type peptidyl-prolyl cis-trans isomerase
30	 57.80	0	33049..33612	+	187	78211588	-	Syncc9605_0033	-	elongation factor P
31	 63.58	0	33609..34094	+	161	78211589	-	Syncc9605_0034	-	biotin carboxyl carrier protein
32	 65.29	0	34096..35112	-	338	78211590	pdxA	Syncc9605_0035	-	4-hydroxythreonine-4-phosphate dehydrogenase
33	 62.26	0	35256..36209	-	317	78211591	-	Syncc9605_0036	-	hypothetical protein
34	 55.81	0	36413..36808	-	131	78211592	-	Syncc9605_0037	-	HNH nuclease
35	 64.74	0	36970..38574	+	534	78211593	-	Syncc9605_0038	-	DEAD/DEAH box helicase-like
36	 59.88	0	38529..38867	-	112	78211594	-	Syncc9605_0039	-	hypothetical protein
37	 58.15	0	38911..39321	-	136	78211595	-	Syncc9605_0040	-	hypothetical protein
38	 62.90	0	39356..39886	-	176	78211596	-	Syncc9605_0041	-	hypothetical protein
39	 58.90	0	40315..40533	+	72	78211597	-	Syncc9605_0042	-	hypothetical protein
40	 51.85	-1	40650..40865	+	71	78211598	-	Syncc9605_0043	-	hypothetical protein
41	 63.01	0	40990..42138	-	382	78211599	-	Syncc9605_0044	-	soluble hydrogenase small subunit
42	 64.95	0	42177..43283	+	368	78211600	cbiD	Syncc9605_0045	-	cobalt-precorrin-6A synthase
43	 60.81	0	43316..44902	+	528	78211601	guaA	Syncc9605_0046	-	bifunctional GMP synthase/glutamine amidotransferase protein
44	 38.61	-2	44957..45847	+	296	78211602	-	Syncc9605_0047	-	hypothetical protein
45	 61.60	0	46205..46816	+	203	78211603	-	Syncc9605_0048	-	hypothetical protein
46	 64.84	0	46826..47209	+	127	78211604	-	Syncc9605_0049	-	hypothetical protein
47	 62.25	0	47206..48993	+	595	78211605	-	Syncc9605_0050	-	peptidoglycan glycosyltransferase
48	 64.57	0	48990..50135	-	381	78211606	-	Syncc9605_0051	-	SqdX
49	 61.07	0	50149..51345	-	398	78211607	-	Syncc9605_0052	-	UDP-sulfoquinovose synthase
50	 61.49	0	51420..51593	-	57	78211608	-	Syncc9605_0053	-	high light-inducible protein-like
51	 64.10	0	51686..52504	-	272	78211609	thiG	Syncc9605_0054	-	thiazole synthase
52	 60.07	0	52556..53101	+	181	78211610	-	Syncc9605_0055	-	hypothetical protein
53	 56.84	0	53140..53658	-	172	78211611	-	Syncc9605_0056	-	hypothetical protein
54	 60.63	0	53670..54017	-	115	78211612	rplT	Syncc9605_0057	-	50S ribosomal protein L20
55	 60.10	0	54074..54271	-	65	78211613	rpmI	Syncc9605_0058	-	50S ribosomal protein L35
56	 65.13	0	54329..55888	+	519	78211614	-	Syncc9605_0059	-	amidase enhancer
57	 62.20	0	55913..57232	+	439	78211615	-	Syncc9605_0060	-	putative glycosyltransferase
58	 59.94	0	57232..58479	+	415	78211616	-	Syncc9605_0061	-	hypothetical protein
59	 66.72	+1	58482..60326	-	614	78211617	-	Syncc9605_0062	-	DNA polymerase III, tau subunit
60	 65.26	0	60350..60988	-	212	78211618	-	Syncc9605_0063	-	hypothetical protein
61	 62.44	0	60993..62342	-	449	78211619	clpX	Syncc9605_0064	-	ATP-dependent protease ATP-binding subunit
62	 61.63	0	62433..63107	-	224	78211620	-	Syncc9605_0065	-	ATP-dependent Clp protease proteolytic subunit ClpP
63	 62.27	0	63151..64560	-	469	78211621	tig	Syncc9605_0066	-	trigger factor
64	 61.49	0	64718..65740	+	340	78211622	-	Syncc9605_0067	-	aspartate semialdehyde dehydrogenase
65	 64.14	0	65740..66648	+	302	78211623	dapA	Syncc9605_0068	-	dihydrodipicolinate synthase
66	 63.04	0	66701..68740	+	679	78211624	-	Syncc9605_0069	-	hypothetical protein
67	 61.16	0	68726..69415	-	229	78211625	-	Syncc9605_0070	-	hypothetical protein
68	 64.67	0	69541..71346	-	601	78211626	-	Syncc9605_0071	-	aspartate kinase
69	 66.36	+1	71394..72359	-	321	78211627	-	Syncc9605_0072	-	DNA polymerase III subunit delta
70	 69.01	+1	72378..73016	+	212	78211628	-	Syncc9605_0073	-	precorrin-8X methylmutase
71	 69.45	+1	72964..73968	-	334	78211629	-	Syncc9605_0074	-	MesJ-like protein
72	 65.48	0	74004..74762	+	252	78211630	-	Syncc9605_0075	-	hypothetical protein
73	 60.00	0	74734..75063	+	109	78211631	-	Syncc9605_0076	-	photosystem II reaction center protein Z
74	 64.60	0	75127..75609	+	160	78211632	ribH	Syncc9605_0077	-	riboflavin synthase subunit beta
75	 67.51	+1	75614..78325	-	903	78211633	-	Syncc9605_0078	-	DNA mismatch repair protein
76	 70.39	+1	78378..78833	-	151	78211634	-	Syncc9605_0079	-	hypothetical protein
77	 62.87	0	78836..80944	+	702	78211635	-	Syncc9605_0080	-	excinuclease ABC subunit B
78	 59.39	0	81186..83990	+	934	78211636	secA	Syncc9605_0081	-	preprotein translocase subunit SecA
79	 60.51	0	84327..85073	-	248	78211637	-	Syncc9605_0082	-	serine O-acetyltransferase
80	 62.28	0	85084..86085	-	333	78211638	-	Syncc9605_0083	-	GntR family transcriptional regulator
81	 61.11	0	86105..86932	+	275	78211639	-	Syncc9605_0084	-	carboxymethylenebutenolidase
82	 61.47	0	86929..87582	-	217	78211640	infC	Syncc9605_0085	-	translation initiation factor IF-3
83	 66.22	+1	87640..88539	-	299	78211641	-	Syncc9605_0086	-	tRNA delta(2)-isopentenylpyrophosphate transferase
84	 60.62	0	88692..90659	+	655	78211642	gyrB	Syncc9605_0087	-	DNA gyrase subunit B
85	 66.07	+1	90659..90994	+	111	78211643	-	Syncc9605_0088	-	hypothetical protein
86	 62.73	0	90975..91355	+	126	78211644	-	Syncc9605_0089	-	camphor resistance protein CrcB
87	 65.41	0	91348..91746	+	132	78211645	-	Syncc9605_0090	-	putative integral membrane protein
88	 61.71	0	91712..92236	-	174	78211646	-	Syncc9605_0091	-	glutathione peroxidase
89	 62.63	0	92258..93718	+	486	78211647	-	Syncc9605_0092	-	magnesium transporter
90	 58.13	0	93773..94780	+	335	78211648	-	Syncc9605_0093	-	type II alternative sigma-70 family RNA polymerase sigma factor
91	 60.24	0	94783..95685	-	300	78211649	-	Syncc9605_0094	-	hypothetical protein
92	 62.05	0	95750..96703	+	317	78211650	-	Syncc9605_0095	-	MoxR protein
93	 63.98	0	98442..99632	+	396	78211651	-	Syncc9605_0099	-	A/G-specific DNA-adenine glycosylase
94	 63.95	0	99654..100610	+	318	78211652	-	Syncc9605_0100	-	putative fructokinase
95	 63.01	0	100577..101068	-	163	78211653	-	Syncc9605_0101	-	hypothetical protein
96	 60.94	0	101099..102529	+	476	78211654	-	Syncc9605_0102	-	S-adenosyl-L-homocysteine hydrolase
97	 62.12	0	102601..103260	+	219	78211655	-	Syncc9605_0103	-	putative alkaline phosphatase-like protein
98	 62.43	0	103294..103671	-	125	78211656	-	Syncc9605_0104	-	single-strand DNA-binding protein
99	 61.73	0	103814..104866	+	350	78211657	-	Syncc9605_0105	-	cell shape determining protein MreB
100	 66.27	+1	104871..105617	+	248	78211658	-	Syncc9605_0106	-	rod shape-determining protein MreC
59.39	MEAN

6.29	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.