IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.22   STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
934	 51.54	0	1029337..1030083	-	248	16330102	-	sll1138	-	hypothetical protein
935	 49.31	0	1030195..1030989	+	264	16330103	purC	slr1226	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
936	 52.71	0	1031202..1033787	+	861	16330104	IAP75	slr1227	-	chloroplast import-associated channel IAP75
937	 49.33	0	1033902..1035545	+	547	16330105	prfC	slr1228	-	peptide chain release factor 3
938	 46.63	0	1035593..1037089	+	498	16330106	-	slr1229	-	hypothetical protein
939	 44.79	0	1037189..1038052	+	287	16330107	-	slr1230	-	hypothetical protein
940	 51.24	0	1038038..1039042	-	334	16330108	-	sll1135	-	hypothetical protein
941	 51.96	0	1039196..1039732	+	178	16330109	-	slr1232	-	hypothetical protein
942	 42.42	-1	1040092..1040355	+	87	16330110	-	ssr2047	-	hypothetical protein
943	 51.56	0	1040531..1042258	+	575	16330111	sdhA	slr1233	-	succinate dehydrogenase flavoprotein subunit
944	 42.86	-1	1042306..1042557	+	83	16330112	bchB	ssr2049	-	protochlorophillide reductase 57 kD subunit
945	 49.86	0	1042609..1042953	+	114	16330113	-	slr1234	-	protein kinase C inhibitor
946	 51.59	0	1042999..1043880	+	293	16330114	-	slr1235	-	hypothetical protein
947	 50.37	0	1043917..1044450	+	177	16330115	-	slr1236	-	hypothetical protein
948	 54.24	+1	1044517..1044693	-	58	16330116	-	ssl2250	-	glycoprotein 64
949	 42.63	-1	1044915..1046366	-	483	16330117	-	sll1132	-	hypothetical protein
950	 46.39	0	1046402..1046830	-	142	16330118	-	sll1131	-	hypothetical protein
951	 50.26	0	1047005..1048357	+	450	16330119	codA	slr1237	-	cytosine deaminase
952	 47.41	0	1048406..1048753	-	115	16330120	-	sll1130	-	hypothetical protein
953	 52.43	0	1048750..1049016	-	88	16330121	-	ssl2245	-	hypothetical protein
954	 49.72	0	1049517..1050407	-	296	16330122	todF	sll1129	-	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
955	 47.50	0	1050490..1050729	+	79	16330123	-	ssr2060	-	hypothetical protein
956	 47.94	0	1050812..1051078	+	88	16330124	grxC	ssr2061	-	glutaredoxin 3
957	 51.19	0	1051159..1052121	+	320	16330125	gshB	slr1238	-	glutathione synthetase
958	 53.18	0	1052518..1052784	+	88	16330126	-	ssr2062	-	hypothetical protein
959	 51.69	0	1052927..1053754	-	275	16330127	menB	sll1127	-	naphthoate synthase
960	 53.36	+1	1053955..1055547	+	530	16330128	pntA	slr1239	-	NAD(P) transhydrogenase subunit alpha
961	 37.96	-2	1055574..1056113	+	179	16330129	-	slr1240	-	hypothetical protein
962	 38.22	-2	1056119..1056466	+	115	16330130	-	slr1241	-	hypothetical protein
963	 42.86	-1	1056714..1056944	+	76	16330131	-	ssr2067	-	hypothetical protein
964	 51.98	0	1056985..1058427	+	480	16330132	pntB	slr1434	-	pyridine nucleotide transhydrogenase beta subunit
965	 48.13	0	1058537..1059820	+	427	16330133	pmbA	slr1435	-	PmbA protein
966	 39.44	-1	1059922..1060773	+	283	16330134	-	slr1436	-	hypothetical protein
967	 46.02	0	1060901..1061239	+	112	16330135	-	slr1437	-	hypothetical protein
968	 51.61	0	1061242..1062111	+	289	16330136	-	slr1438	-	hypothetical protein
969	 46.28	0	1062238..1065204	-	988	16330137	ileS	sll1362	-	isoleucyl-tRNA synthetase
970	 46.67	0	1065398..1065622	+	74	16330138	-	ssr2406	-	hypothetical protein
971	 48.85	0	1065660..1069010	-	1116	16330139	dnaX	sll1360	-	DNA polymerase III subunit
972	 47.45	0	1069178..1069609	+	143	16330140	-	slr1440	-	hypothetical protein
973	 47.32	0	1069666..1071702	-	678	16330141	-	sll1359	-	hypothetical protein
974	 50.13	0	1071734..1072918	-	394	16330142	-	sll1358	-	hypothetical protein
975	 46.78	0	1073080..1075629	-	849	16330143	glgP	sll1356	-	glycogen phosphorylase
976	 44.36	0	1076065..1076454	+	129	16330144	-	slr1441	-	hypothetical protein
977	 47.07	0	1076474..1077019	-	181	16330145	-	sll1355	-	hypothetical protein
978	 49.07	0	1077755..1078612	+	285	16330146	-	slr1442	-	hypothetical protein
979	 50.95	0	1078657..1080501	+	614	16330147	pknA	slr1443	-	protein kinase
980	 44.31	0	1080695..1081696	+	333	16330148	-	slr1444	-	hypothetical protein
981	 42.75	-1	1081887..1082141	+	84	16330149	-	ssr2422	-	hypothetical protein
982	 51.71	0	1082437..1084716	-	759	16330150	recJ	sll1354	-	single-strand-DNA-specific exonuclease; RecJ
983	 42.01	-1	1084757..1087753	-	998	16330151	-	sll1353	-	sensory transduction histidine kinase
984	 46.30	0	1087772..1089190	-	472	16330152	-	sll1352	-	hypothetical protein
985	 52.81	0	1089400..1090323	+	307	16330153	cscK	slr1448	-	fructokinase
986	 40.00	-1	1090680..1091279	+	199	16330154	-	slr1449	-	hypothetical protein
987	 51.43	0	1091317..1091631	+	104	16330155	-	slr1450	-	hypothetical protein
988	 52.05	0	1091698..1092894	-	398	16330156	-	sll1350	-	hypothetical protein
989	 42.64	-1	1092925..1093590	-	221	16330157	cbbZp	sll1349	-	phosphoglycolate phosphatase
990	 51.26	0	1093626..1094495	-	289	16330158	-	sll1348	-	hypothetical protein
991	 52.32	0	1094649..1095143	-	164	16330159	ribH	sll1282	-	riboflavin synthase subunit beta
992	 47.84	0	1095248..1095571	-	107	16330160	ycf9	sll1281	-	photosystem II reaction center protein Z
993	 51.10	0	1095772..1096683	-	303	16330161	-	sll1280	-	hypothetical protein
994	 52.48	0	1097077..1098063	+	328	16330162	rps1	slr1356	-	30S ribosomal protein S1
995	 36.63	-2	1098323..1099171	+	282	16330163	-	slr1357	-	transposase
996	 50.04	0	1099214..1100368	-	384	16330164	recF	sll1277	-	recombination protein F
997	 49.03	0	1100410..1102014	-	534	16330165	-	sll1276	-	ABC transporter
998	 52.65	0	1102283..1104058	-	591	16330166	pykF	sll1275	-	pyruvate kinase
999	 47.51	0	1104246..1104647	+	133	16330167	-	slr1362	-	hypothetical protein
1000	 51.55	0	1105030..1105545	-	171	16330168	-	sll1274	-	hypothetical protein
1001	 49.70	0	1105666..1107168	+	500	16330169	-	slr1363	-	hypothetical protein
1002	 53.26	+1	1107242..1108330	+	362	16330170	bioB	slr1364	-	biotin synthetase
1003	 53.67	+1	1108314..1108967	+	217	16330171	bioY	slr1365	-	BioY protein
1004	 52.06	0	1108967..1109452	+	161	16330172	lspA	slr1366	-	lipoprotein signal peptidase
1005	 39.37	-1	1109620..1111044	-	474	16330173	-	sll1273	-	hypothetical protein
1006	 42.80	-1	1111185..1111955	-	256	16330174	-	sll1272	-	hypothetical protein
1007	 48.57	0	1112531..1114249	-	572	16330175	-	sll1271	-	hypothetical protein
1008	 50.09	0	1114429..1116021	-	530	16330176	glnH/glnP	sll1270	-	glutamine-binding periplasmic protein/glutamine transport system permease protein
1009	 42.96	-1	1116360..1116629	-	89	16330177	-	ssl2501	-	hypothetical protein
1010	 49.42	0	1117107..1119674	+	855	16330178	glgP	slr1367	-	glycogen phosphorylase
1011	 51.18	0	1119916..1120509	+	197	161344766	cbiT	slr1368	-	precorrin-6B methylase
1012	 50.45	0	1120643..1121524	+	293	16330180	cdsA	slr1369	-	phosphatidate cytidylyltransferase
1013	 46.14	0	1121627..1123180	-	517	16330181	-	sll1268	-	hypothetical protein
1014	 48.73	0	1123441..1124031	-	196	16330182	-	sll1267	-	hypothetical protein
1015	 52.43	0	1124071..1130007	-	1978	16330183	-	sll1265	-	hypothetical protein
1016	 46.32	0	1130313..1131683	-	456	16330184	-	sll0877	-	hypothetical protein
1017	 43.61	0	1131810..1132247	+	145	16330185	mscL	slr0875	-	large-conductance mechanosensitive channel
1018	 50.63	0	1132264..1132899	-	211	16330186	ruvA	sll0876	-	Holliday junction DNA helicase motor protein
1019	 52.25	0	1132914..1133690	-	258	16330187	-	sll0875	-	hypothetical protein
1020	 52.11	0	1133879..1135108	+	409	16330188	-	slr0876	-	hypothetical protein
1021	 49.21	0	1135337..1135588	+	83	16330189	-	ssr1480	-	RNA-binding protein
1022	 53.24	+1	1135716..1137167	+	483	16330190	gatA	slr0877	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1023	 53.25	+1	1137375..1138112	+	245	16330191	-	slr0878	-	hypothetical protein
1024	 52.63	0	1138210..1138608	+	132	16330192	gcvH	slr0879	-	glycine decarboxylase complex H-protein
1025	 48.56	0	1138702..1140474	+	590	16330193	-	slr0880	-	secreted protein MPB70 precursor
1026	 50.69	0	1140497..1141660	-	387	16330194	napC	sll0873	-	carboxynorspermidine decarboxylase
1027	 44.13	0	1141803..1142015	-	70	16330195	-	ssl1633	-	high light inducible protein
1028	 54.49	+1	1142101..1142412	+	103	16330196	-	slr0881	-	hypothetical protein
1029	 40.20	-1	1142501..1142893	-	130	16330197	-	sll0872	-	hypothetical protein
1030	 50.38	0	1143047..1144231	+	394	16330198	-	slr0882	-	hypothetical protein
1031	 52.84	0	1144728..1146173	+	481	16330199	psr	slr0883	-	regulation of penicillin binding protein 5 production
1032	 52.68	0	1146290..1146718	-	142	16330200	-	sll0871	-	hypothetical protein
1033	 50.80	0	1147034..1148098	+	354	16330201	gap1	slr0884	-	glyceraldehyde-3-phosphate dehydrogenase
48.22	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.